Protein–RNA interactions for Protein: Q9H4P4

RNF41, E3 ubiquitin-protein ligase NRDP1, humanhuman

Predicted RBP Predictions only

Length 317 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF41Q9H4P4 BIN1-205ENST00000351659 2365 ntTSL 1 (best) BASIC25.89■■□□□ 1.74
RNF41Q9H4P4 C9orf163-202ENST00000624034 2573 ntBASIC25.89■■□□□ 1.74
RNF41Q9H4P4 CDC37L1-202ENST00000381858 1244 ntTSL 5 BASIC25.89■■□□□ 1.74
RNF41Q9H4P4 HSPE1-203ENST00000409729 478 ntTSL 2 BASIC25.89■■□□□ 1.74
RNF41Q9H4P4 CKLF-205ENST00000417030 628 ntAPPRIS ALT2 TSL 4 BASIC25.89■■□□□ 1.74
RNF41Q9H4P4 AC079305.3-201ENST00000455416 218 ntTSL 5 BASIC25.89■■□□□ 1.74
RNF41Q9H4P4 AL137002.2-201ENST00000639766 2238 ntTSL 5 BASIC25.89■■□□□ 1.74
RNF41Q9H4P4 CACNG2-201ENST00000300105 2384 ntAPPRIS P1 TSL 1 (best) BASIC25.89■■□□□ 1.73
RNF41Q9H4P4 TARSL2-207ENST00000615656 2356 ntAPPRIS ALT2 TSL 5 BASIC25.89■■□□□ 1.73
RNF41Q9H4P4 FOXA2-201ENST00000377115 2401 ntAPPRIS P3 TSL 1 (best) BASIC25.88■■□□□ 1.73
RNF41Q9H4P4 IRF2BP1-201ENST00000302165 2564 ntAPPRIS P1 BASIC25.88■■□□□ 1.73
RNF41Q9H4P4 TRIM14-202ENST00000342043 1479 ntAPPRIS P1 TSL 1 (best) BASIC25.88■■□□□ 1.73
RNF41Q9H4P4 HES3-201ENST00000377898 697 ntAPPRIS P1 TSL 2 BASIC25.88■■□□□ 1.73
RNF41Q9H4P4 SLC26A1-203ENST00000398520 1111 ntTSL 1 (best) BASIC25.88■■□□□ 1.73
RNF41Q9H4P4 CDKN2A-210ENST00000530628 748 ntAPPRIS P1 TSL 5 BASIC25.88■■□□□ 1.73
RNF41Q9H4P4 COMT-203ENST00000403184 2217 ntTSL 2 BASIC25.88■■□□□ 1.73
RNF41Q9H4P4 GFRA3-202ENST00000378362 1837 ntAPPRIS ALT2 TSL 1 (best) BASIC25.88■■□□□ 1.73
RNF41Q9H4P4 BTBD7-205ENST00000554565 2697 ntTSL 1 (best) BASIC25.88■■□□□ 1.73
RNF41Q9H4P4 WRAP73-201ENST00000270708 1665 ntAPPRIS P1 TSL 1 (best) BASIC25.87■■□□□ 1.73
RNF41Q9H4P4 ADSS-201ENST00000366535 2780 ntAPPRIS P1 TSL 1 (best) BASIC25.87■■□□□ 1.73
RNF41Q9H4P4 MRPL37-202ENST00000360840 1483 ntAPPRIS P1 TSL 1 (best) BASIC25.87■■□□□ 1.73
RNF41Q9H4P4 POLR3GL-201ENST00000369313 818 ntTSL 2 BASIC25.87■■□□□ 1.73
RNF41Q9H4P4 ZEB1-AS1-201ENST00000423714 456 ntTSL 3 BASIC25.87■■□□□ 1.73
RNF41Q9H4P4 MCRIP1-205ENST00000572645 1038 ntTSL 1 (best) BASIC25.87■■□□□ 1.73
RNF41Q9H4P4 HOXD1-201ENST00000331462 1975 ntAPPRIS P1 TSL 1 (best) BASIC25.87■■□□□ 1.73
RNF41Q9H4P4 TULP1-202ENST00000322263 1941 ntTSL 1 (best) BASIC25.86■■□□□ 1.73
RNF41Q9H4P4 STOML1-201ENST00000316900 2169 ntTSL 2 BASIC25.86■■□□□ 1.73
RNF41Q9H4P4 AL391650.1-201ENST00000448923 1468 ntAPPRIS P1 TSL 2 BASIC25.86■■□□□ 1.73
RNF41Q9H4P4 COG8-201ENST00000562081 1731 ntAPPRIS P1 TSL 5 BASIC25.86■■□□□ 1.73
RNF41Q9H4P4 STOX2-205ENST00000513034 807 ntTSL 3 BASIC25.86■■□□□ 1.73
RNF41Q9H4P4 SIRT3-215ENST00000532956 1235 ntTSL 2 BASIC25.86■■□□□ 1.73
RNF41Q9H4P4 SLC9A3-201ENST00000264938 2584 ntAPPRIS P3 TSL 1 (best) BASIC25.86■■□□□ 1.73
RNF41Q9H4P4 PNRC1-201ENST00000336032 2065 ntAPPRIS P1 TSL 1 (best) BASIC25.86■■□□□ 1.73
RNF41Q9H4P4 SAMD4B-208ENST00000598913 2877 ntAPPRIS ALT1 TSL 1 (best) BASIC25.85■■□□□ 1.73
RNF41Q9H4P4 PTP4A3-204ENST00000521578 1717 ntAPPRIS P1 TSL 5 BASIC25.85■■□□□ 1.73
RNF41Q9H4P4 SUMF1-201ENST00000272902 2159 ntAPPRIS P1 TSL 1 (best) BASIC25.85■■□□□ 1.73
RNF41Q9H4P4 INS-202ENST00000381330 597 ntAPPRIS P1 TSL 1 (best) BASIC25.85■■□□□ 1.73
RNF41Q9H4P4 LINC01574-201ENST00000512115 560 ntTSL 2 BASIC25.85■■□□□ 1.73
RNF41Q9H4P4 NPY4R-201ENST00000374312 1956 ntAPPRIS P1 TSL 1 (best) BASIC25.85■■□□□ 1.73
RNF41Q9H4P4 NPY4R2-201ENST00000576178 1956 ntAPPRIS P1 TSL 1 (best) BASIC25.85■■□□□ 1.73
RNF41Q9H4P4 KDELR1-203ENST00000597017 1594 ntTSL 2 BASIC25.85■■□□□ 1.73
RNF41Q9H4P4 ACTL10-201ENST00000330271 2028 ntAPPRIS P1 BASIC25.85■■□□□ 1.73
RNF41Q9H4P4 SLAIN1-213ENST00000466548 2637 ntAPPRIS ALT2 TSL 5 BASIC25.84■■□□□ 1.73
RNF41Q9H4P4 STAP2-206ENST00000600324 1508 ntAPPRIS P3 TSL 2 BASIC25.84■■□□□ 1.73
RNF41Q9H4P4 CROT-202ENST00000412227 1213 ntTSL 1 (best) BASIC25.84■■□□□ 1.73
RNF41Q9H4P4 LRRC34-201ENST00000446859 1718 ntAPPRIS ALT2 TSL 2 BASIC25.84■■□□□ 1.73
RNF41Q9H4P4 AC061979.1-201ENST00000532061 434 ntTSL 5 BASIC25.84■■□□□ 1.73
RNF41Q9H4P4 AC087742.1-201ENST00000575880 1738 ntBASIC25.84■■□□□ 1.73
RNF41Q9H4P4 ARPC5L-201ENST00000259477 1325 ntAPPRIS P1 TSL 1 (best) BASIC25.84■■□□□ 1.73
RNF41Q9H4P4 FAHD1-201ENST00000382666 1964 ntTSL 2 BASIC25.84■■□□□ 1.73
RNF41Q9H4P4 MFSD7-203ENST00000404286 1826 ntAPPRIS ALT2 TSL 1 (best) BASIC25.84■■□□□ 1.73
RNF41Q9H4P4 ESRRAP2-201ENST00000418437 1549 ntBASIC25.83■■□□□ 1.73
RNF41Q9H4P4 ZNF395-210ENST00000523095 1790 ntAPPRIS P1 TSL 1 (best) BASIC25.83■■□□□ 1.73
RNF41Q9H4P4 PHPT1-201ENST00000247665 890 ntAPPRIS P1 TSL 1 (best) BASIC25.83■■□□□ 1.73
RNF41Q9H4P4 POLR2F-203ENST00000407936 582 ntTSL 3 BASIC25.83■■□□□ 1.73
RNF41Q9H4P4 NGEF-203ENST00000409079 1022 ntTSL 1 (best) BASIC25.83■■□□□ 1.73
RNF41Q9H4P4 POLR2F-207ENST00000460648 518 ntTSL 4 BASIC25.83■■□□□ 1.73
RNF41Q9H4P4 NKX2-1-201ENST00000354822 2191 ntTSL 1 (best) BASIC25.83■■□□□ 1.73
RNF41Q9H4P4 THRA-201ENST00000264637 2538 ntTSL 1 (best) BASIC25.83■■□□□ 1.73
RNF41Q9H4P4 OXCT2P1-201ENST00000447263 1535 ntBASIC25.83■■□□□ 1.72
RNF41Q9H4P4 ZNF668-205ENST00000426488 2282 ntTSL 5 BASIC25.83■■□□□ 1.72
RNF41Q9H4P4 ARHGAP27-207ENST00000528273 2319 ntTSL 1 (best) BASIC25.82■■□□□ 1.72
RNF41Q9H4P4 DMRT2-209ENST00000635183 2190 ntTSL 5 BASIC25.82■■□□□ 1.72
RNF41Q9H4P4 NPEPL1-201ENST00000356091 2378 ntAPPRIS P1 TSL 1 (best) BASIC25.82■■□□□ 1.72
RNF41Q9H4P4 PRR35-201ENST00000409413 2216 ntAPPRIS P1 TSL 1 (best) BASIC25.82■■□□□ 1.72
RNF41Q9H4P4 HES6-202ENST00000409002 1286 ntAPPRIS ALT2 TSL 1 (best) BASIC25.82■■□□□ 1.72
RNF41Q9H4P4 ATP10A-207ENST00000619904 988 ntTSL 5 BASIC25.82■■□□□ 1.72
RNF41Q9H4P4 PDLIM3-203ENST00000284771 1672 ntAPPRIS P1 TSL 1 (best) BASIC25.82■■□□□ 1.72
RNF41Q9H4P4 C1orf229-201ENST00000623686 2258 ntBASIC25.82■■□□□ 1.72
RNF41Q9H4P4 SETD9-211ENST00000628593 1306 ntTSL 1 (best) BASIC25.82■■□□□ 1.72
RNF41Q9H4P4 DECR2-201ENST00000219481 1615 ntAPPRIS P1 TSL 1 (best) BASIC25.81■■□□□ 1.72
RNF41Q9H4P4 RALB-201ENST00000272519 2344 ntAPPRIS P1 TSL 1 (best) BASIC25.81■■□□□ 1.72
RNF41Q9H4P4 ANKRD54-201ENST00000215941 2184 ntAPPRIS P1 TSL 1 (best) BASIC25.81■■□□□ 1.72
RNF41Q9H4P4 IRS3P-201ENST00000223076 1006 ntBASIC25.81■■□□□ 1.72
RNF41Q9H4P4 MIR572-201ENST00000384983 95 ntBASIC25.81■■□□□ 1.72
RNF41Q9H4P4 ZNRF2P3-201ENST00000424200 374 ntBASIC25.81■■□□□ 1.72
RNF41Q9H4P4 ZFYVE28-207ENST00000509171 1135 ntTSL 2 BASIC25.81■■□□□ 1.72
RNF41Q9H4P4 RHOF-204ENST00000537265 699 ntTSL 2 BASIC25.81■■□□□ 1.72
RNF41Q9H4P4 TRAF4-217ENST00000618771 543 ntTSL 5 BASIC25.81■■□□□ 1.72
RNF41Q9H4P4 CCM2L-201ENST00000262659 2523 ntAPPRIS P1 TSL 1 (best) BASIC25.81■■□□□ 1.72
RNF41Q9H4P4 C11orf96-201ENST00000339446 1308 ntTSL 5 BASIC25.81■■□□□ 1.72
RNF41Q9H4P4 EXOG-203ENST00000422077 1317 ntTSL 2 BASIC25.81■■□□□ 1.72
RNF41Q9H4P4 SLC25A47-202ENST00000557052 1552 ntTSL 1 (best) BASIC25.81■■□□□ 1.72
RNF41Q9H4P4 LMTK3-201ENST00000270238 4972 ntAPPRIS P2 TSL 1 (best) BASIC25.81■■□□□ 1.72
RNF41Q9H4P4 LYPLA1-201ENST00000316963 2585 ntAPPRIS P1 TSL 1 (best) BASIC25.81■■□□□ 1.72
RNF41Q9H4P4 ZNF517-207ENST00000531720 1615 ntAPPRIS P1 TSL 1 (best) BASIC25.81■■□□□ 1.72
RNF41Q9H4P4 HADH-201ENST00000309522 1912 ntAPPRIS P1 TSL 1 (best) BASIC25.8■■□□□ 1.72
RNF41Q9H4P4 XPA-201ENST00000375128 1417 ntAPPRIS P1 TSL 1 (best) BASIC25.8■■□□□ 1.72
RNF41Q9H4P4 AARD-201ENST00000378279 2299 ntAPPRIS P1 TSL 1 (best) BASIC25.8■■□□□ 1.72
RNF41Q9H4P4 TRAF4-205ENST00000444415 1456 ntTSL 5 BASIC25.8■■□□□ 1.72
RNF41Q9H4P4 WT1-210ENST00000639563 1494 ntAPPRIS ALT2 TSL 1 (best) BASIC25.8■■□□□ 1.72
RNF41Q9H4P4 RASGEF1B-208ENST00000510780 539 ntTSL 3 BASIC25.8■■□□□ 1.72
RNF41Q9H4P4 RASGEF1B-209ENST00000512343 498 ntTSL 3 BASIC25.8■■□□□ 1.72
RNF41Q9H4P4 AC006538.2-201ENST00000586572 543 ntAPPRIS P1 TSL 4 BASIC25.8■■□□□ 1.72
RNF41Q9H4P4 TOX2-201ENST00000341197 1880 ntAPPRIS P1 TSL 2 BASIC25.8■■□□□ 1.72
RNF41Q9H4P4 ABHD6-201ENST00000295962 2393 ntAPPRIS P1 TSL 1 (best) BASIC25.8■■□□□ 1.72
RNF41Q9H4P4 B4GAT1-201ENST00000311181 2072 ntAPPRIS P1 TSL 1 (best) BASIC25.79■■□□□ 1.72
RNF41Q9H4P4 AP006623.1-201ENST00000506172 2061 ntTSL 5 BASIC25.79■■□□□ 1.72
RNF41Q9H4P4 POMZP3-202ENST00000310842 1490 ntAPPRIS P1 TSL 1 (best) BASIC25.79■■□□□ 1.72
RNF41Q9H4P4 NHLH1-201ENST00000302101 2563 ntAPPRIS P1 TSL 1 (best) BASIC25.79■■□□□ 1.72
Retrieved 100 of 98,524 protein–RNA pairs in 30.1 ms