Protein–RNA interactions for Protein: Q9H4L4

SENP3, Sentrin-specific protease 3, humanhuman

Predicted RBP Predictions only

Length 574 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SENP3Q9H4L4 LRRC75A-AS1-202ENST00000470491 1057 ntTSL 1 (best) BASIC31.92■■■□□ 2.7
SENP3Q9H4L4 AC092368.3-201ENST00000562549 1107 ntTSL 5 BASIC31.92■■■□□ 2.7
SENP3Q9H4L4 GALNS-213ENST00000569433 723 ntTSL 3 BASIC31.92■■■□□ 2.7
SENP3Q9H4L4 ARL16-209ENST00000573715 763 ntTSL 3 BASIC31.92■■■□□ 2.7
SENP3Q9H4L4 ARL16-211ENST00000576135 694 ntTSL 3 BASIC31.92■■■□□ 2.7
SENP3Q9H4L4 PSMC3IP-208ENST00000590760 664 ntTSL 1 (best) BASIC31.92■■■□□ 2.7
SENP3Q9H4L4 TCEAL4-213ENST00000613326 1166 ntAPPRIS ALT2 TSL 2 BASIC31.92■■■□□ 2.7
SENP3Q9H4L4 RHBDL3-204ENST00000538145 1338 ntAPPRIS ALT2 TSL 1 (best) BASIC31.92■■■□□ 2.7
SENP3Q9H4L4 RNASEH2B-201ENST00000336617 1629 ntAPPRIS P1 TSL 1 (best) BASIC31.92■■■□□ 2.7
SENP3Q9H4L4 ARF1-213ENST00000540651 1972 ntAPPRIS P1 TSL 2 BASIC31.92■■■□□ 2.7
SENP3Q9H4L4 NAE1-204ENST00000394074 1654 ntTSL 5 BASIC31.92■■■□□ 2.7
SENP3Q9H4L4 OTUD5-201ENST00000156084 2740 ntAPPRIS P3 TSL 1 (best) BASIC31.91■■■□□ 2.7
SENP3Q9H4L4 SPTSSA-201ENST00000298130 2777 ntAPPRIS P1 TSL 1 (best) BASIC31.91■■■□□ 2.7
SENP3Q9H4L4 WT1-210ENST00000639563 1494 ntAPPRIS ALT2 TSL 1 (best) BASIC31.91■■■□□ 2.7
SENP3Q9H4L4 C6orf201-202ENST00000380175 1834 ntAPPRIS P1 TSL 1 (best) BASIC31.91■■■□□ 2.7
SENP3Q9H4L4 XBP1-202ENST00000344347 1131 ntTSL 5 BASIC31.91■■■□□ 2.7
SENP3Q9H4L4 PIGP-203ENST00000399098 972 ntTSL 1 (best) BASIC31.91■■■□□ 2.7
SENP3Q9H4L4 DET1-205ENST00000558413 583 ntTSL 4 BASIC31.91■■■□□ 2.7
SENP3Q9H4L4 NUDT18-201ENST00000611621 1497 ntAPPRIS P1 TSL 1 (best) BASIC31.91■■■□□ 2.7
SENP3Q9H4L4 AC006970.2-201ENST00000450065 779 ntBASIC31.9■■■□□ 2.7
SENP3Q9H4L4 MGAT4D-201ENST00000503109 1281 ntAPPRIS ALT2 TSL 5 BASIC31.9■■■□□ 2.7
SENP3Q9H4L4 TRIM14-202ENST00000342043 1479 ntAPPRIS P1 TSL 1 (best) BASIC31.9■■■□□ 2.7
SENP3Q9H4L4 MESP2-201ENST00000341735 1552 ntAPPRIS P1 TSL 1 (best) BASIC31.9■■■□□ 2.7
SENP3Q9H4L4 DCXR-201ENST00000306869 887 ntAPPRIS P1 TSL 1 (best) BASIC31.89■■■□□ 2.7
SENP3Q9H4L4 COX20-201ENST00000366528 568 ntTSL 2 BASIC31.89■■■□□ 2.7
SENP3Q9H4L4 AURKAIP1-204ENST00000378853 875 ntAPPRIS P1 TSL 2 BASIC31.89■■■□□ 2.7
SENP3Q9H4L4 AC140479.5-201ENST00000568189 735 ntTSL 3 BASIC31.89■■■□□ 2.7
SENP3Q9H4L4 WT1-AS_3.1-201ENST00000613262 234 ntBASIC31.89■■■□□ 2.7
SENP3Q9H4L4 FBXL22-201ENST00000360587 1526 ntAPPRIS P2 TSL 1 (best) BASIC31.89■■■□□ 2.7
SENP3Q9H4L4 JSRP1-201ENST00000300961 1138 ntAPPRIS P1 TSL 2 BASIC31.88■■■□□ 2.69
SENP3Q9H4L4 SLC22A15-201ENST00000369502 1230 ntTSL 2 BASIC31.88■■■□□ 2.69
SENP3Q9H4L4 AC109992.2-201ENST00000460977 765 ntTSL 3 BASIC31.88■■■□□ 2.69
SENP3Q9H4L4 RAB6A-204ENST00000536566 1267 ntTSL 5 BASIC31.88■■■□□ 2.69
SENP3Q9H4L4 MRPS2-202ENST00000371785 1640 ntAPPRIS P1 TSL 3 BASIC31.88■■■□□ 2.69
SENP3Q9H4L4 SPG21-201ENST00000204566 1822 ntAPPRIS P1 TSL 1 (best) BASIC31.88■■■□□ 2.69
SENP3Q9H4L4 PSIP1-202ENST00000380716 1889 ntTSL 5 BASIC31.88■■■□□ 2.69
SENP3Q9H4L4 ACTG1-210ENST00000575842 2256 ntAPPRIS P1 TSL 1 (best) BASIC31.87■■■□□ 2.69
SENP3Q9H4L4 ADSSL1-202ENST00000332972 1969 ntTSL 1 (best) BASIC31.87■■■□□ 2.69
SENP3Q9H4L4 AP002761.3-201ENST00000546324 1695 ntTSL 2 BASIC31.87■■■□□ 2.69
SENP3Q9H4L4 DCAF4-206ENST00000509153 1521 ntAPPRIS ALT2 TSL 2 BASIC31.87■■■□□ 2.69
SENP3Q9H4L4 CLN3-207ENST00000395653 1430 ntTSL 5 BASIC31.87■■■□□ 2.69
SENP3Q9H4L4 PHLDA3-201ENST00000367309 896 ntAPPRIS P1 TSL 5 BASIC31.87■■■□□ 2.69
SENP3Q9H4L4 MT1M-201ENST00000379818 829 ntAPPRIS P1 TSL 1 (best) BASIC31.87■■■□□ 2.69
SENP3Q9H4L4 SDHAP3-201ENST00000436493 736 ntTSL 1 (best) BASIC31.87■■■□□ 2.69
SENP3Q9H4L4 APTR-205ENST00000447009 902 ntTSL 2 BASIC31.87■■■□□ 2.69
SENP3Q9H4L4 AP000229.1-202ENST00000609365 559 ntTSL 4 BASIC31.87■■■□□ 2.69
SENP3Q9H4L4 RARA-203ENST00000394086 2008 ntTSL 2 BASIC31.87■■■□□ 2.69
SENP3Q9H4L4 LINC01342-201ENST00000416774 1620 ntTSL 1 (best) BASIC31.86■■■□□ 2.69
SENP3Q9H4L4 HMGA2-205ENST00000425208 1444 ntTSL 1 (best) BASIC31.86■■■□□ 2.69
SENP3Q9H4L4 TRNT1-207ENST00000420393 854 ntTSL 3 BASIC31.86■■■□□ 2.69
SENP3Q9H4L4 CROCCP5-201ENST00000436658 830 ntBASIC31.86■■■□□ 2.69
SENP3Q9H4L4 AC084149.2-201ENST00000438443 797 ntTSL 5 BASIC31.86■■■□□ 2.69
SENP3Q9H4L4 ABHD14A-202ENST00000458031 1113 ntTSL 5 BASIC31.86■■■□□ 2.69
SENP3Q9H4L4 AC110921.1-201ENST00000577544 612 ntTSL 3 BASIC31.86■■■□□ 2.69
SENP3Q9H4L4 ZNF837-201ENST00000427624 2038 ntAPPRIS P1 TSL 1 (best) BASIC31.86■■■□□ 2.69
SENP3Q9H4L4 TTC34-202ENST00000637179 1775 ntAPPRIS P2 TSL 5 BASIC31.86■■■□□ 2.69
SENP3Q9H4L4 RAB28-208ENST00000630951 1679 ntTSL 5 BASIC31.86■■■□□ 2.69
SENP3Q9H4L4 HDGFL2-210ENST00000621835 2255 ntAPPRIS ALT2 TSL 1 (best) BASIC31.86■■■□□ 2.69
SENP3Q9H4L4 SPRED3-204ENST00000587013 1539 ntTSL 5 BASIC31.85■■■□□ 2.69
SENP3Q9H4L4 AP004607.4-201ENST00000530158 1459 ntBASIC31.85■■■□□ 2.69
SENP3Q9H4L4 CBARP-202ENST00000382477 2453 ntAPPRIS ALT2 TSL 5 BASIC31.85■■■□□ 2.69
SENP3Q9H4L4 CCDC74B-203ENST00000409128 789 ntAPPRIS ALT2 TSL 2 BASIC31.85■■■□□ 2.69
SENP3Q9H4L4 AC115837.2-201ENST00000522127 677 ntTSL 3 BASIC31.85■■■□□ 2.69
SENP3Q9H4L4 CDK7-215ENST00000629350 1149 ntTSL 5 BASIC31.85■■■□□ 2.69
SENP3Q9H4L4 AL161729.1-201ENST00000604104 1402 ntBASIC31.84■■■□□ 2.69
SENP3Q9H4L4 C19orf24-201ENST00000409293 983 ntAPPRIS P1 TSL 2 BASIC31.84■■■□□ 2.69
SENP3Q9H4L4 AC022211.4-201ENST00000625094 2161 ntBASIC31.84■■■□□ 2.69
SENP3Q9H4L4 AZIN2-201ENST00000294517 2182 ntAPPRIS P1 TSL 1 (best) BASIC31.83■■■□□ 2.69
SENP3Q9H4L4 TNFRSF18-203ENST00000379268 1179 ntAPPRIS ALT2 TSL 1 (best) BASIC31.83■■■□□ 2.69
SENP3Q9H4L4 FNDC3B-204ENST00000421757 946 ntTSL 1 (best) BASIC31.83■■■□□ 2.69
SENP3Q9H4L4 UFD1-201ENST00000263202 1814 ntAPPRIS P1 TSL 1 (best) BASIC31.83■■■□□ 2.69
SENP3Q9H4L4 C1QTNF4-201ENST00000302514 1664 ntAPPRIS P1 TSL 1 (best) BASIC31.83■■■□□ 2.69
SENP3Q9H4L4 RILP-201ENST00000301336 1771 ntAPPRIS P1 TSL 1 (best) BASIC31.82■■■□□ 2.68
SENP3Q9H4L4 ACYP2-201ENST00000303536 789 ntTSL 2 BASIC31.82■■■□□ 2.68
SENP3Q9H4L4 TRAPPC5-203ENST00000595985 411 ntTSL 3 BASIC31.82■■■□□ 2.68
SENP3Q9H4L4 AC011767.1-201ENST00000617410 1153 ntBASIC31.82■■■□□ 2.68
SENP3Q9H4L4 ABL2-203ENST00000392043 2140 ntTSL 1 (best) BASIC31.82■■■□□ 2.68
SENP3Q9H4L4 AL022393.1-201ENST00000625142 1677 ntBASIC31.82■■■□□ 2.68
SENP3Q9H4L4 NAGLU-201ENST00000225927 2544 ntAPPRIS P1 TSL 1 (best) BASIC31.81■■■□□ 2.68
SENP3Q9H4L4 NIPSNAP2-205ENST00000446778 1882 ntTSL 2 BASIC31.81■■■□□ 2.68
SENP3Q9H4L4 UBE2D3-201ENST00000321805 1087 ntAPPRIS ALT1 TSL 5 BASIC31.81■■■□□ 2.68
SENP3Q9H4L4 UBE2C-203ENST00000352551 665 ntTSL 2 BASIC31.81■■■□□ 2.68
SENP3Q9H4L4 ORMDL1-202ENST00000392349 1137 ntAPPRIS P1 TSL 1 (best) BASIC31.81■■■□□ 2.68
SENP3Q9H4L4 BTBD17-201ENST00000375366 1805 ntAPPRIS P1 TSL 1 (best) BASIC31.81■■■□□ 2.68
SENP3Q9H4L4 GPS1-204ENST00000392358 2276 ntTSL 1 (best) BASIC31.8■■■□□ 2.68
SENP3Q9H4L4 CKMT1B-207ENST00000441322 1747 ntAPPRIS P1 TSL 1 (best) BASIC31.8■■■□□ 2.68
SENP3Q9H4L4 CPLX1-201ENST00000304062 2181 ntAPPRIS P1 TSL 1 (best) BASIC31.8■■■□□ 2.68
SENP3Q9H4L4 STX4-202ENST00000394998 1498 ntTSL 2 BASIC31.8■■■□□ 2.68
SENP3Q9H4L4 SLBP-206ENST00000489418 1977 ntAPPRIS P2 TSL 1 (best) BASIC31.8■■■□□ 2.68
SENP3Q9H4L4 ZDHHC16-203ENST00000353979 1647 ntTSL 1 (best) BASIC31.8■■■□□ 2.68
SENP3Q9H4L4 HCFC1R1-201ENST00000248089 965 ntTSL 1 (best) BASIC31.8■■■□□ 2.68
SENP3Q9H4L4 DLEU2-203ENST00000425586 1267 ntTSL 1 (best) BASIC31.8■■■□□ 2.68
SENP3Q9H4L4 C12orf75-205ENST00000549893 719 ntTSL 3 BASIC31.8■■■□□ 2.68
SENP3Q9H4L4 HCFC1R1-207ENST00000574980 845 ntTSL 5 BASIC31.8■■■□□ 2.68
SENP3Q9H4L4 RING1-201ENST00000374656 1752 ntAPPRIS P1 TSL 1 (best) BASIC31.8■■■□□ 2.68
SENP3Q9H4L4 PTH1R-202ENST00000418619 2070 ntAPPRIS P1 TSL 5 BASIC31.8■■■□□ 2.68
SENP3Q9H4L4 METTL9-202ENST00000396014 1817 ntAPPRIS ALT1 TSL 1 (best) BASIC31.79■■■□□ 2.68
SENP3Q9H4L4 CHSY1-201ENST00000254190 4550 ntAPPRIS P1 TSL 1 (best) BASIC31.79■■■□□ 2.68
SENP3Q9H4L4 B3GAT3-201ENST00000265471 1641 ntAPPRIS P1 TSL 1 (best) BASIC31.79■■■□□ 2.68
SENP3Q9H4L4 B4GAT1-201ENST00000311181 2072 ntAPPRIS P1 TSL 1 (best) BASIC31.79■■■□□ 2.68
Retrieved 100 of 98,524 protein–RNA pairs in 70.6 ms