Protein–RNA interactions for Protein: Q9BUN5

CCDC28B, Coiled-coil domain-containing protein 28B, humanhuman

Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28BQ9BUN5 C1QTNF12-201ENST00000330388 1036 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
CCDC28BQ9BUN5 H2AFY-204ENST00000423969 924 ntTSL 2 BASIC21.28■■□□□ 1
CCDC28BQ9BUN5 AC078883.1-201ENST00000442417 950 ntTSL 3 BASIC21.28■■□□□ 1
CCDC28BQ9BUN5 AC148477.1-201ENST00000537720 476 ntTSL 3 BASIC21.28■■□□□ 1
CCDC28BQ9BUN5 SNX5-217ENST00000606557 1087 ntBASIC21.28■■□□□ 1
CCDC28BQ9BUN5 ZYG11B-202ENST00000545132 2294 ntTSL 2 BASIC21.28■■□□□ 1
CCDC28BQ9BUN5 PABPC1L2B-201ENST00000373521 2197 ntAPPRIS P1 BASIC21.28■■□□□ 1
CCDC28BQ9BUN5 RPS6KL1-216ENST00000557413 2425 ntAPPRIS P1 TSL 5 BASIC21.28■■□□□ 1
CCDC28BQ9BUN5 CPEB1-218ENST00000620182 2422 ntTSL 2 BASIC21.28■■□□□ 1
CCDC28BQ9BUN5 ARRB2-201ENST00000269260 1895 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
CCDC28BQ9BUN5 LINC01960-201ENST00000563759 1884 ntBASIC21.28■■□□□ 1
CCDC28BQ9BUN5 ATP8A1-207ENST00000510289 2238 ntTSL 1 (best) BASIC21.28■■□□□ 1
CCDC28BQ9BUN5 MIR222HG-202ENST00000602507 1758 ntTSL 5 BASIC21.28■■□□□ 1
CCDC28BQ9BUN5 RFLNA-201ENST00000324038 2148 ntAPPRIS P2 TSL 2 BASIC21.28■■□□□ 1
CCDC28BQ9BUN5 PKIB-205ENST00000368452 1398 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
CCDC28BQ9BUN5 AC092490.1-203ENST00000514568 1972 ntTSL 1 (best) BASIC21.27■■□□□ 1
CCDC28BQ9BUN5 AC007383.2-202ENST00000435627 482 ntTSL 2 BASIC21.27■■□□□ 1
CCDC28BQ9BUN5 PALM-208ENST00000592155 2272 ntTSL 4 BASIC21.27■■□□□ 1
CCDC28BQ9BUN5 SIGMAR1-201ENST00000277010 1656 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
CCDC28BQ9BUN5 TMEM147-203ENST00000392205 767 ntTSL 2 BASIC21.26■□□□□ 0.99
CCDC28BQ9BUN5 VSTM2A-202ENST00000402613 1076 ntTSL 2 BASIC21.26■□□□□ 0.99
CCDC28BQ9BUN5 BHLHE23-202ENST00000612929 1109 ntBASIC21.26■□□□□ 0.99
CCDC28BQ9BUN5 PVT1_1.1-201ENST00000615125 194 ntBASIC21.26■□□□□ 0.99
CCDC28BQ9BUN5 ACHE-201ENST00000241069 2172 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
CCDC28BQ9BUN5 RBMS1-205ENST00000409972 1815 ntTSL 5 BASIC21.25■□□□□ 0.99
CCDC28BQ9BUN5 PRMT5-201ENST00000216350 2271 ntTSL 2 BASIC21.25■□□□□ 0.99
CCDC28BQ9BUN5 WHAMM-201ENST00000286760 5101 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
CCDC28BQ9BUN5 COPRS-201ENST00000302362 968 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
CCDC28BQ9BUN5 TMEM179-204ENST00000556573 1430 ntAPPRIS P1 TSL 3 BASIC21.25■□□□□ 0.99
CCDC28BQ9BUN5 ATP6AP1-201ENST00000369762 2099 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
CCDC28BQ9BUN5 SLC35C1-202ENST00000442528 1756 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
CCDC28BQ9BUN5 AL391650.1-201ENST00000448923 1468 ntAPPRIS P1 TSL 2 BASIC21.25■□□□□ 0.99
CCDC28BQ9BUN5 IRF3-207ENST00000593922 1494 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
CCDC28BQ9BUN5 AC011498.4-201ENST00000586020 1803 ntAPPRIS P1 TSL 2 BASIC21.25■□□□□ 0.99
CCDC28BQ9BUN5 CTU2-201ENST00000312060 1672 ntAPPRIS P3 TSL 5 BASIC21.24■□□□□ 0.99
CCDC28BQ9BUN5 PPP1R12B-202ENST00000356764 1687 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
CCDC28BQ9BUN5 ZPBP2-201ENST00000348931 1543 ntAPPRIS P4 TSL 1 (best) BASIC21.24■□□□□ 0.99
CCDC28BQ9BUN5 MAGI2-201ENST00000354212 6880 ntAPPRIS P3 TSL 1 (best) BASIC21.24■□□□□ 0.99
CCDC28BQ9BUN5 ANKLE2-201ENST00000357997 4646 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
CCDC28BQ9BUN5 DENND2D-202ENST00000369752 1894 ntAPPRIS ALT2 TSL 2 BASIC21.24■□□□□ 0.99
CCDC28BQ9BUN5 YTHDF3-214ENST00000621890 2296 ntTSL 5 BASIC21.24■□□□□ 0.99
CCDC28BQ9BUN5 MCRIP1-202ENST00000457257 942 ntTSL 3 BASIC21.24■□□□□ 0.99
CCDC28BQ9BUN5 PTCH1-210ENST00000468211 1254 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
CCDC28BQ9BUN5 AC010913.1-201ENST00000608612 420 ntTSL 2 BASIC21.24■□□□□ 0.99
CCDC28BQ9BUN5 AC009086.3-201ENST00000623486 1008 ntBASIC21.24■□□□□ 0.99
CCDC28BQ9BUN5 COMT-206ENST00000407537 1457 ntAPPRIS P3 TSL 5 BASIC21.24■□□□□ 0.99
CCDC28BQ9BUN5 BICDL2-201ENST00000389347 1811 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
CCDC28BQ9BUN5 SPIRE2-202ENST00000393062 2172 ntAPPRIS ALT2 TSL 1 (best) BASIC21.24■□□□□ 0.99
CCDC28BQ9BUN5 COL23A1-201ENST00000390654 3061 ntAPPRIS P2 TSL 5 BASIC21.24■□□□□ 0.99
CCDC28BQ9BUN5 IRX5-202ENST00000394636 2401 ntAPPRIS P3 TSL 3 BASIC21.24■□□□□ 0.99
CCDC28BQ9BUN5 DACT1-204ENST00000541264 2610 ntAPPRIS ALT2 TSL 2 BASIC21.24■□□□□ 0.99
CCDC28BQ9BUN5 PAQR6-212ENST00000540423 1729 ntTSL 3 BASIC21.24■□□□□ 0.99
CCDC28BQ9BUN5 PLPP1-202ENST00000307259 1597 ntAPPRIS ALT1 TSL 1 (best) BASIC21.23■□□□□ 0.99
CCDC28BQ9BUN5 S1PR5-202ENST00000439028 2191 ntAPPRIS P1 TSL 2 BASIC21.23■□□□□ 0.99
CCDC28BQ9BUN5 CAPN12-201ENST00000328867 2762 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
CCDC28BQ9BUN5 C9orf147-202ENST00000457681 561 ntTSL 2 BASIC21.23■□□□□ 0.99
CCDC28BQ9BUN5 ST3GAL5-222ENST00000638572 4431 ntAPPRIS P2 TSL 1 (best) BASIC21.23■□□□□ 0.99
CCDC28BQ9BUN5 SGMS1-210ENST00000619438 1680 ntTSL 5 BASIC21.23■□□□□ 0.99
CCDC28BQ9BUN5 P4HTM-202ENST00000383729 2127 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
CCDC28BQ9BUN5 HRK-201ENST00000257572 5789 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
CCDC28BQ9BUN5 HADH-201ENST00000309522 1912 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
CCDC28BQ9BUN5 ADARB1-205ENST00000437626 5032 ntTSL 1 (best) BASIC21.22■□□□□ 0.99
CCDC28BQ9BUN5 PEX6-201ENST00000244546 2696 ntTSL 1 (best) BASIC21.22■□□□□ 0.99
CCDC28BQ9BUN5 DTWD2-203ENST00000510708 2307 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
CCDC28BQ9BUN5 MAP7D1-201ENST00000316156 3456 ntAPPRIS ALT2 TSL 1 (best) BASIC21.22■□□□□ 0.99
CCDC28BQ9BUN5 HAGHL-205ENST00000561546 1041 ntTSL 2 BASIC21.22■□□□□ 0.99
CCDC28BQ9BUN5 WDR86-207ENST00000621812 1542 ntTSL 5 BASIC21.22■□□□□ 0.99
CCDC28BQ9BUN5 NABP2-203ENST00000380198 1775 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
CCDC28BQ9BUN5 GMDS-202ENST00000380815 1752 ntAPPRIS P3 TSL 1 (best) BASIC21.22■□□□□ 0.99
CCDC28BQ9BUN5 KLC3-204ENST00000585434 1764 ntAPPRIS ALT1 TSL 1 (best) BASIC21.22■□□□□ 0.99
CCDC28BQ9BUN5 DAPK3-202ENST00000545797 2257 ntAPPRIS P1 TSL 2 BASIC21.22■□□□□ 0.99
CCDC28BQ9BUN5 C6orf89-201ENST00000355190 1309 ntAPPRIS P3 TSL 1 (best) BASIC21.22■□□□□ 0.99
CCDC28BQ9BUN5 AC092384.1-201ENST00000378347 1812 ntTSL 2 BASIC21.22■□□□□ 0.99
CCDC28BQ9BUN5 EPHA6-202ENST00000470610 2058 ntTSL 2 BASIC21.22■□□□□ 0.99
CCDC28BQ9BUN5 ZNF503-AS2-202ENST00000466942 1430 ntTSL 2 BASIC21.21■□□□□ 0.99
CCDC28BQ9BUN5 CCSAP-201ENST00000284617 5121 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
CCDC28BQ9BUN5 ARFGAP3-201ENST00000263245 2857 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
CCDC28BQ9BUN5 RNF165-205ENST00000588679 2904 ntBASIC21.21■□□□□ 0.99
CCDC28BQ9BUN5 LPAR1-201ENST00000358883 2687 ntAPPRIS P2 TSL 2 BASIC21.21■□□□□ 0.99
CCDC28BQ9BUN5 MFSD7-202ENST00000347950 1599 ntTSL 2 BASIC21.21■□□□□ 0.99
CCDC28BQ9BUN5 SMARCD2-203ENST00000448276 2716 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
CCDC28BQ9BUN5 AC244015.2-201ENST00000616358 1861 ntBASIC21.21■□□□□ 0.99
CCDC28BQ9BUN5 FBXO25-202ENST00000350302 2229 ntAPPRIS ALT1 TSL 1 (best) BASIC21.21■□□□□ 0.99
CCDC28BQ9BUN5 LPCAT4-201ENST00000314891 2262 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
CCDC28BQ9BUN5 PDXK-205ENST00000398081 2251 ntTSL 2 BASIC21.21■□□□□ 0.99
CCDC28BQ9BUN5 SLC9A3R1-201ENST00000262613 1969 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
CCDC28BQ9BUN5 CCDC185-201ENST00000366875 2054 ntAPPRIS P1 BASIC21.2■□□□□ 0.99
CCDC28BQ9BUN5 ST3GAL4-201ENST00000227495 1790 ntAPPRIS P3 TSL 5 BASIC21.2■□□□□ 0.99
CCDC28BQ9BUN5 DRD2-202ENST00000362072 2789 ntAPPRIS P2 TSL 1 (best) BASIC21.2■□□□□ 0.98
CCDC28BQ9BUN5 SLC46A3-202ENST00000380814 2121 ntAPPRIS ALT1 TSL 1 (best) BASIC21.2■□□□□ 0.98
CCDC28BQ9BUN5 C19orf12-201ENST00000323670 2464 ntAPPRIS P1 TSL 2 BASIC21.2■□□□□ 0.98
CCDC28BQ9BUN5 PWWP2A-205ENST00000523662 1819 ntTSL 1 (best) BASIC21.2■□□□□ 0.98
CCDC28BQ9BUN5 ORAI3-201ENST00000318663 2206 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
CCDC28BQ9BUN5 ARPP19-201ENST00000249822 5301 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
CCDC28BQ9BUN5 SNUPN-207ENST00000567134 1641 ntAPPRIS P1 TSL 5 BASIC21.2■□□□□ 0.98
CCDC28BQ9BUN5 STMN4-201ENST00000265770 1250 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
CCDC28BQ9BUN5 TMPO-AS1-201ENST00000546421 738 ntTSL 5 BASIC21.2■□□□□ 0.98
CCDC28BQ9BUN5 DUX4L4-201ENST00000566884 1269 ntBASIC21.2■□□□□ 0.98
CCDC28BQ9BUN5 HSD17B1P1-201ENST00000590052 955 ntBASIC21.2■□□□□ 0.98
CCDC28BQ9BUN5 KPTN-201ENST00000338134 1691 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
Retrieved 100 of 98,524 protein–RNA pairs in 32.5 ms