Protein–RNA interactions for Protein: Q96QK1

VPS35, Vacuolar protein sorting-associated protein 35, humanhuman

Predictions only

Length 796 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35Q96QK1 PLEKHF1-204ENST00000592810 1357 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
VPS35Q96QK1 KRTAP5-7-201ENST00000398536 1408 ntAPPRIS P1 BASIC21.73■■□□□ 1.07
VPS35Q96QK1 EBPL-204ENST00000378272 766 ntTSL 3 BASIC21.73■■□□□ 1.07
VPS35Q96QK1 AICDA-202ENST00000537228 667 ntTSL 5 BASIC21.73■■□□□ 1.07
VPS35Q96QK1 GALNS-211ENST00000568311 703 ntTSL 1 (best) BASIC21.73■■□□□ 1.07
VPS35Q96QK1 EI24-211ENST00000534546 1544 ntTSL 2 BASIC21.73■■□□□ 1.07
VPS35Q96QK1 AC090377.1-201ENST00000585691 1762 ntTSL 3 BASIC21.73■■□□□ 1.07
VPS35Q96QK1 CNTD2-202ENST00000430325 1817 ntAPPRIS P2 TSL 2 BASIC21.73■■□□□ 1.07
VPS35Q96QK1 PRELID2-201ENST00000334744 2140 ntTSL 2 BASIC21.73■■□□□ 1.07
VPS35Q96QK1 GRK4-204ENST00000503518 2136 ntTSL 1 (best) BASIC21.73■■□□□ 1.07
VPS35Q96QK1 FAM110A-206ENST00000541082 1614 ntAPPRIS P1 TSL 3 BASIC21.73■■□□□ 1.07
VPS35Q96QK1 LINC01960-201ENST00000563759 1884 ntBASIC21.73■■□□□ 1.07
VPS35Q96QK1 SOS2-201ENST00000216373 5498 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
VPS35Q96QK1 THRA-209ENST00000584985 2421 ntTSL 1 (best) BASIC21.72■■□□□ 1.07
VPS35Q96QK1 ARRDC1-AS1-201ENST00000371417 1409 ntTSL 1 (best) BASIC21.72■■□□□ 1.07
VPS35Q96QK1 AC098864.1-205ENST00000315302 2260 ntTSL 2 BASIC21.72■■□□□ 1.07
VPS35Q96QK1 ACP1-201ENST00000272065 1549 ntAPPRIS P5 TSL 1 (best) BASIC21.72■■□□□ 1.07
VPS35Q96QK1 AGAP3-201ENST00000335367 2675 ntTSL 1 (best) BASIC21.72■■□□□ 1.07
VPS35Q96QK1 CCDC115-202ENST00000409127 1247 ntTSL 2 BASIC21.72■■□□□ 1.07
VPS35Q96QK1 GRAMD4P2-201ENST00000423297 1097 ntBASIC21.72■■□□□ 1.07
VPS35Q96QK1 IGHV3-19-201ENST00000521488 291 ntBASIC21.72■■□□□ 1.07
VPS35Q96QK1 AP003419.1-201ENST00000535922 470 ntTSL 3 BASIC21.72■■□□□ 1.07
VPS35Q96QK1 HOMER3-206ENST00000594439 982 ntTSL 1 (best) BASIC21.72■■□□□ 1.07
VPS35Q96QK1 MIS18A-201ENST00000290130 1575 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
VPS35Q96QK1 SLC35F4-206ENST00000556826 1908 ntAPPRIS P1 TSL 5 BASIC21.72■■□□□ 1.07
VPS35Q96QK1 LEF1-AS1-207ENST00000512637 1675 ntTSL 1 (best) BASIC21.72■■□□□ 1.07
VPS35Q96QK1 ASF1B-201ENST00000263382 2059 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
VPS35Q96QK1 KLC3-204ENST00000585434 1764 ntAPPRIS ALT1 TSL 1 (best) BASIC21.71■■□□□ 1.07
VPS35Q96QK1 PGF-206ENST00000555567 1927 ntAPPRIS P3 TSL 1 (best) BASIC21.71■■□□□ 1.07
VPS35Q96QK1 SRPK3-202ENST00000370101 1958 ntAPPRIS P3 TSL 1 (best) BASIC21.71■■□□□ 1.07
VPS35Q96QK1 FXYD7-201ENST00000270310 712 ntAPPRIS P2 TSL 1 (best) BASIC21.71■■□□□ 1.07
VPS35Q96QK1 PRMT2-204ENST00000397628 954 ntTSL 2 BASIC21.71■■□□□ 1.07
VPS35Q96QK1 PLPP5-201ENST00000419686 794 ntTSL 2 BASIC21.71■■□□□ 1.07
VPS35Q96QK1 NKX2-2-AS1-201ENST00000549659 638 ntTSL 5 BASIC21.71■■□□□ 1.07
VPS35Q96QK1 POLR2J2-202ENST00000358438 2065 ntAPPRIS ALT2 TSL 1 (best) BASIC21.71■■□□□ 1.07
VPS35Q96QK1 LRRC75A-203ENST00000470794 1390 ntAPPRIS ALT2 TSL 1 (best) BASIC21.71■■□□□ 1.07
VPS35Q96QK1 SLC25A11-201ENST00000225665 1897 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
VPS35Q96QK1 RANBP10-206ENST00000602677 2374 ntTSL 5 BASIC21.7■■□□□ 1.07
VPS35Q96QK1 HTATIP2-204ENST00000451739 1748 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
VPS35Q96QK1 PANK2-201ENST00000316562 2280 ntAPPRIS P2 TSL 1 (best) BASIC21.7■■□□□ 1.06
VPS35Q96QK1 OLIG1-201ENST00000382348 2277 ntAPPRIS P1 BASIC21.7■■□□□ 1.06
VPS35Q96QK1 MRPL46-201ENST00000312475 1019 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
VPS35Q96QK1 HYI-206ENST00000372434 1025 ntTSL 5 BASIC21.7■■□□□ 1.06
VPS35Q96QK1 AC087239.1-201ENST00000622671 572 ntBASIC21.7■■□□□ 1.06
VPS35Q96QK1 HOXC8-201ENST00000040584 1889 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
VPS35Q96QK1 KBTBD13-201ENST00000432196 1377 ntAPPRIS P1 BASIC21.7■■□□□ 1.06
VPS35Q96QK1 KCNIP1-201ENST00000328939 2014 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
VPS35Q96QK1 SLC39A14-202ENST00000289952 2137 ntAPPRIS ALT2 TSL 2 BASIC21.7■■□□□ 1.06
VPS35Q96QK1 ASPSCR1-201ENST00000306729 2123 ntAPPRIS ALT2 TSL 2 BASIC21.7■■□□□ 1.06
VPS35Q96QK1 ACTR1B-201ENST00000289228 2243 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
VPS35Q96QK1 RAB11FIP3-201ENST00000262305 4831 ntAPPRIS P2 TSL 1 (best) BASIC21.69■■□□□ 1.06
VPS35Q96QK1 USP45-205ENST00000472914 1617 ntTSL 5 BASIC21.69■■□□□ 1.06
VPS35Q96QK1 COG8-201ENST00000562081 1731 ntAPPRIS P1 TSL 5 BASIC21.69■■□□□ 1.06
VPS35Q96QK1 RGS6-209ENST00000553525 2005 ntAPPRIS ALT1 TSL 2 BASIC21.69■■□□□ 1.06
VPS35Q96QK1 TANGO2-210ENST00000432883 2084 ntTSL 2 BASIC21.69■■□□□ 1.06
VPS35Q96QK1 YIF1B-202ENST00000337679 1257 ntTSL 1 (best) BASIC21.69■■□□□ 1.06
VPS35Q96QK1 CLPSL2-201ENST00000360454 488 ntAPPRIS ALT2 TSL 1 (best) BASIC21.69■■□□□ 1.06
VPS35Q96QK1 FAIM-203ENST00000393034 927 ntAPPRIS P3 TSL 2 BASIC21.69■■□□□ 1.06
VPS35Q96QK1 HSPE1-203ENST00000409729 478 ntTSL 2 BASIC21.69■■□□□ 1.06
VPS35Q96QK1 AC019069.1-201ENST00000610008 1333 ntBASIC21.69■■□□□ 1.06
VPS35Q96QK1 PTPN13-205ENST00000502971 1708 ntTSL 1 (best) BASIC21.69■■□□□ 1.06
VPS35Q96QK1 FAM120B-204ENST00000625626 1794 ntAPPRIS ALT2 TSL 2 BASIC21.69■■□□□ 1.06
VPS35Q96QK1 ASPSCR1-202ENST00000306739 1843 ntAPPRIS P3 TSL 1 (best) BASIC21.69■■□□□ 1.06
VPS35Q96QK1 SPNS1-207ENST00000565975 1979 ntTSL 1 (best) BASIC21.68■■□□□ 1.06
VPS35Q96QK1 PNKP-201ENST00000322344 2041 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
VPS35Q96QK1 ME2-208ENST00000638937 2471 ntTSL 5 BASIC21.68■■□□□ 1.06
VPS35Q96QK1 POLR3GL-201ENST00000369313 818 ntTSL 2 BASIC21.68■■□□□ 1.06
VPS35Q96QK1 SLC26A1-203ENST00000398520 1111 ntTSL 1 (best) BASIC21.68■■□□□ 1.06
VPS35Q96QK1 CKLF-205ENST00000417030 628 ntAPPRIS ALT2 TSL 4 BASIC21.68■■□□□ 1.06
VPS35Q96QK1 AC105265.2-201ENST00000467189 838 ntBASIC21.68■■□□□ 1.06
VPS35Q96QK1 PAFAH1B2-205ENST00000529887 1056 ntTSL 1 (best) BASIC21.68■■□□□ 1.06
VPS35Q96QK1 UBALD1-208ENST00000591401 1305 ntTSL 5 BASIC21.68■■□□□ 1.06
VPS35Q96QK1 AC009506.1-201ENST00000418474 1494 ntTSL 2 BASIC21.68■■□□□ 1.06
VPS35Q96QK1 GABBR2-201ENST00000259455 5788 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
VPS35Q96QK1 HAS1-201ENST00000222115 2087 ntAPPRIS P3 TSL 1 (best) BASIC21.68■■□□□ 1.06
VPS35Q96QK1 KLC1-205ENST00000380038 2322 ntTSL 2 BASIC21.68■■□□□ 1.06
VPS35Q96QK1 HYAL2-207ENST00000442581 2318 ntAPPRIS P1 TSL 2 BASIC21.68■■□□□ 1.06
VPS35Q96QK1 BMP6-201ENST00000283147 2780 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
VPS35Q96QK1 SAMD4B-208ENST00000598913 2877 ntAPPRIS ALT1 TSL 1 (best) BASIC21.68■■□□□ 1.06
VPS35Q96QK1 PKM-201ENST00000319622 2717 ntAPPRIS P5 TSL 2 BASIC21.67■■□□□ 1.06
VPS35Q96QK1 AC133561.1-201ENST00000568600 2415 ntBASIC21.67■■□□□ 1.06
VPS35Q96QK1 CACNG2-201ENST00000300105 2384 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
VPS35Q96QK1 KLC1-227ENST00000634686 2229 ntTSL 5 BASIC21.67■■□□□ 1.06
VPS35Q96QK1 AL137002.2-201ENST00000639766 2238 ntTSL 5 BASIC21.67■■□□□ 1.06
VPS35Q96QK1 HOXA4-201ENST00000360046 1747 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
VPS35Q96QK1 CDC37L1-202ENST00000381858 1244 ntTSL 5 BASIC21.67■■□□□ 1.06
VPS35Q96QK1 AC010141.3-201ENST00000456659 717 ntBASIC21.67■■□□□ 1.06
VPS35Q96QK1 AC008443.4-201ENST00000503314 456 ntTSL 4 BASIC21.67■■□□□ 1.06
VPS35Q96QK1 SSPN-204ENST00000535504 419 ntTSL 1 (best) BASIC21.67■■□□□ 1.06
VPS35Q96QK1 MADCAM1-208ENST00000621286 1203 ntAPPRIS ALT2 TSL 5 BASIC21.67■■□□□ 1.06
VPS35Q96QK1 HOXD1-201ENST00000331462 1975 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
VPS35Q96QK1 WRAP73-201ENST00000270708 1665 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
VPS35Q96QK1 CCDC154-201ENST00000389176 2212 ntAPPRIS P5 TSL 5 BASIC21.66■■□□□ 1.06
VPS35Q96QK1 TSPY26P-201ENST00000476365 1326 ntBASIC21.66■■□□□ 1.06
VPS35Q96QK1 HES3-201ENST00000377898 697 ntAPPRIS P1 TSL 2 BASIC21.66■■□□□ 1.06
VPS35Q96QK1 AC079305.3-201ENST00000455416 218 ntTSL 5 BASIC21.66■■□□□ 1.06
VPS35Q96QK1 TRIM14-202ENST00000342043 1479 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
VPS35Q96QK1 AL391650.1-201ENST00000448923 1468 ntAPPRIS P1 TSL 2 BASIC21.65■■□□□ 1.06
VPS35Q96QK1 REPS2-202ENST00000357277 7953 ntAPPRIS P3 TSL 1 (best) BASIC21.65■■□□□ 1.06
VPS35Q96QK1 PHPT1-201ENST00000247665 890 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
Retrieved 100 of 98,524 protein–RNA pairs in 40.7 ms