Protein–RNA interactions for Protein: Q92541

RTF1, RNA polymerase-associated protein RTF1 homolog, humanhuman

Known RBP Predictions only

Length 710 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RTF1Q92541 DUSP8P3-201ENST00000399571 1760 ntBASIC28.67■■■□□ 2.18
RTF1Q92541 ZNF419-203ENST00000354197 1569 ntTSL 5 BASIC28.67■■■□□ 2.18
RTF1Q92541 UTS2R-201ENST00000313135 1357 ntAPPRIS P1 BASIC28.67■■■□□ 2.18
RTF1Q92541 LINC02228-203ENST00000641970 1355 ntBASIC28.67■■■□□ 2.18
RTF1Q92541 SPOCK2-203ENST00000412663 1284 ntTSL 5 BASIC28.67■■■□□ 2.18
RTF1Q92541 DUX4L2-201ENST00000561772 1275 ntBASIC28.67■■■□□ 2.18
RTF1Q92541 DUX4-206ENST00000616166 1275 ntAPPRIS P2 BASIC28.67■■■□□ 2.18
RTF1Q92541 DUX4L6-201ENST00000626483 1275 ntBASIC28.67■■■□□ 2.18
RTF1Q92541 DUX4L1-201ENST00000627662 1275 ntBASIC28.67■■■□□ 2.18
RTF1Q92541 DUX4L8-201ENST00000629013 1275 ntBASIC28.67■■■□□ 2.18
RTF1Q92541 DUX4L3-201ENST00000630187 1275 ntBASIC28.67■■■□□ 2.18
RTF1Q92541 DUX4L7-201ENST00000630678 1275 ntBASIC28.67■■■□□ 2.18
RTF1Q92541 DUX4L5-201ENST00000630834 1275 ntBASIC28.67■■■□□ 2.18
RTF1Q92541 SRPK3-204ENST00000370108 1863 ntAPPRIS ALT2 TSL 5 BASIC28.67■■■□□ 2.18
RTF1Q92541 DDN-AS1-202ENST00000547866 2114 ntTSL 3 BASIC28.67■■■□□ 2.18
RTF1Q92541 CDCP1-202ENST00000425231 1416 ntAPPRIS ALT2 TSL 1 (best) BASIC28.67■■■□□ 2.18
RTF1Q92541 CERS4-205ENST00000558331 1803 ntTSL 5 BASIC28.66■■■□□ 2.18
RTF1Q92541 MAP3K3-210ENST00000584573 2480 ntTSL 1 (best) BASIC28.66■■■□□ 2.18
RTF1Q92541 MPC1-202ENST00000360961 962 ntAPPRIS P2 TSL 5 BASIC28.66■■■□□ 2.18
RTF1Q92541 TMEM70-203ENST00000517439 617 ntTSL 2 BASIC28.66■■■□□ 2.18
RTF1Q92541 SLC25A45-206ENST00000526432 894 ntTSL 1 (best) BASIC28.66■■■□□ 2.18
RTF1Q92541 PEBP1-201ENST00000261313 1697 ntAPPRIS P1 TSL 1 (best) BASIC28.66■■■□□ 2.18
RTF1Q92541 ANKRD11-217ENST00000613312 1584 ntAPPRIS ALT2 TSL 5 BASIC28.66■■■□□ 2.18
RTF1Q92541 P4HA3-201ENST00000331597 2274 ntAPPRIS P1 TSL 1 (best) BASIC28.66■■■□□ 2.18
RTF1Q92541 EID2B-201ENST00000326282 1865 ntAPPRIS P1 BASIC28.66■■■□□ 2.18
RTF1Q92541 PTPRM-201ENST00000332175 6095 ntAPPRIS P3 TSL 1 (best) BASIC28.65■■■□□ 2.18
RTF1Q92541 OXCT2P1-201ENST00000447263 1535 ntBASIC28.65■■■□□ 2.18
RTF1Q92541 MOSPD3-202ENST00000379527 1016 ntAPPRIS P1 TSL 5 BASIC28.65■■■□□ 2.18
RTF1Q92541 GLI4-210ENST00000523522 1297 ntAPPRIS P1 TSL 1 (best) BASIC28.65■■■□□ 2.18
RTF1Q92541 CCDC92B-201ENST00000575506 885 ntBASIC28.65■■■□□ 2.18
RTF1Q92541 CEBPD-201ENST00000408965 2178 ntAPPRIS P1 BASIC28.65■■■□□ 2.18
RTF1Q92541 FAM136A-201ENST00000037869 1810 ntAPPRIS P1 TSL 1 (best) BASIC28.64■■■□□ 2.18
RTF1Q92541 SMUG1-215ENST00000508394 1697 ntAPPRIS P1 TSL 2 BASIC28.64■■■□□ 2.18
RTF1Q92541 PICK1-202ENST00000404072 2164 ntAPPRIS P1 TSL 2 BASIC28.64■■■□□ 2.18
RTF1Q92541 ZBTB45-205ENST00000600990 2159 ntAPPRIS P1 TSL 5 BASIC28.64■■■□□ 2.18
RTF1Q92541 GALK1-201ENST00000225614 1445 ntAPPRIS P1 TSL 2 BASIC28.64■■■□□ 2.18
RTF1Q92541 VGLL2-201ENST00000326274 2212 ntAPPRIS P1 TSL 1 (best) BASIC28.64■■■□□ 2.18
RTF1Q92541 ELANE-202ENST00000590230 1028 ntAPPRIS P1 TSL 5 BASIC28.64■■■□□ 2.18
RTF1Q92541 AC090377.1-201ENST00000585691 1762 ntTSL 3 BASIC28.64■■■□□ 2.18
RTF1Q92541 SEC22C-207ENST00000423701 1458 ntTSL 1 (best) BASIC28.64■■■□□ 2.17
RTF1Q92541 ORMDL1-202ENST00000392349 1137 ntAPPRIS P1 TSL 1 (best) BASIC28.63■■■□□ 2.17
RTF1Q92541 AC092675.2-201ENST00000413274 541 ntTSL 4 BASIC28.63■■■□□ 2.17
RTF1Q92541 GLI3-203ENST00000437480 451 ntTSL 2 BASIC28.63■■■□□ 2.17
RTF1Q92541 SPINT2-201ENST00000301244 1802 ntAPPRIS P2 TSL 1 (best) BASIC28.63■■■□□ 2.17
RTF1Q92541 PCSK6-216ENST00000615296 2921 ntTSL 5 BASIC28.63■■■□□ 2.17
RTF1Q92541 SPAG7-205ENST00000573366 1668 ntTSL 3 BASIC28.63■■■□□ 2.17
RTF1Q92541 STX18-205ENST00000505286 1380 ntTSL 1 (best) BASIC28.62■■■□□ 2.17
RTF1Q92541 EIF6-203ENST00000374450 1289 ntAPPRIS P1 TSL 1 (best) BASIC28.62■■■□□ 2.17
RTF1Q92541 AC019068.1-201ENST00000415226 552 ntTSL 4 BASIC28.62■■■□□ 2.17
RTF1Q92541 TUSC3-209ENST00000509380 1266 ntTSL 5 BASIC28.62■■■□□ 2.17
RTF1Q92541 AL133516.1-201ENST00000633012 540 ntTSL 5 BASIC28.62■■■□□ 2.17
RTF1Q92541 FNTA-208ENST00000529687 1950 ntTSL 2 BASIC28.62■■■□□ 2.17
RTF1Q92541 LINC01578-209ENST00000557682 2683 ntTSL 2 BASIC28.62■■■□□ 2.17
RTF1Q92541 IGF2-AS-201ENST00000381361 2063 ntTSL 2 BASIC28.62■■■□□ 2.17
RTF1Q92541 SMAD1-201ENST00000302085 1966 ntAPPRIS P1 TSL 1 (best) BASIC28.61■■■□□ 2.17
RTF1Q92541 C1orf122-202ENST00000373043 2229 ntAPPRIS ALT2 TSL 1 (best) BASIC28.61■■■□□ 2.17
RTF1Q92541 KHSRP-201ENST00000398148 2993 ntAPPRIS P2 TSL 1 (best) BASIC28.61■■■□□ 2.17
RTF1Q92541 URAD-201ENST00000332715 931 ntAPPRIS P1 TSL 5 BASIC28.61■■■□□ 2.17
RTF1Q92541 TSPAN2-201ENST00000369515 793 ntTSL 3 BASIC28.61■■■□□ 2.17
RTF1Q92541 GADD45A-201ENST00000370985 803 ntTSL 1 (best) BASIC28.61■■■□□ 2.17
RTF1Q92541 ZNF696-205ENST00000521537 705 ntTSL 2 BASIC28.61■■■□□ 2.17
RTF1Q92541 RPLP2-207ENST00000530797 637 ntAPPRIS P1 TSL 1 (best) BASIC28.61■■■□□ 2.17
RTF1Q92541 KRT18P14-201ENST00000534205 1250 ntBASIC28.61■■■□□ 2.17
RTF1Q92541 TERF1P2-201ENST00000583350 1212 ntBASIC28.61■■■□□ 2.17
RTF1Q92541 TSKU-201ENST00000333090 2712 ntAPPRIS P1 TSL 1 (best) BASIC28.61■■■□□ 2.17
RTF1Q92541 ZMYND11-210ENST00000403354 1664 ntTSL 5 BASIC28.61■■■□□ 2.17
RTF1Q92541 TRAP1-202ENST00000538171 2052 ntTSL 2 BASIC28.6■■■□□ 2.17
RTF1Q92541 CNTD2-202ENST00000430325 1817 ntAPPRIS P2 TSL 2 BASIC28.6■■■□□ 2.17
RTF1Q92541 RNF208-201ENST00000391553 1077 ntAPPRIS P1 BASIC28.6■■■□□ 2.17
RTF1Q92541 RNF208-202ENST00000392827 1135 ntAPPRIS P1 TSL 5 BASIC28.6■■■□□ 2.17
RTF1Q92541 AP001005.4-202ENST00000575325 560 ntTSL 4 BASIC28.6■■■□□ 2.17
RTF1Q92541 AC012313.1-203ENST00000597980 570 ntTSL 4 BASIC28.6■■■□□ 2.17
RTF1Q92541 CTDSPL-206ENST00000443503 4640 ntAPPRIS ALT1 TSL 1 (best) BASIC28.6■■■□□ 2.17
RTF1Q92541 ID4-201ENST00000378700 2344 ntAPPRIS P1 TSL 1 (best) BASIC28.6■■■□□ 2.17
RTF1Q92541 PDLIM3-203ENST00000284771 1672 ntAPPRIS P1 TSL 1 (best) BASIC28.6■■■□□ 2.17
RTF1Q92541 MSANTD3-207ENST00000622639 1748 ntAPPRIS P1 TSL 3 BASIC28.6■■■□□ 2.17
RTF1Q92541 PTH1R-201ENST00000313049 2123 ntAPPRIS P1 TSL 1 (best) BASIC28.6■■■□□ 2.17
RTF1Q92541 CYHR1-201ENST00000306145 1409 ntTSL 1 (best) BASIC28.6■■■□□ 2.17
RTF1Q92541 CLEC14A-201ENST00000342213 2267 ntAPPRIS P1 BASIC28.59■■■□□ 2.17
RTF1Q92541 AC233992.2-201ENST00000531225 1596 ntAPPRIS P1 TSL 2 BASIC28.59■■■□□ 2.17
RTF1Q92541 MAGI2-217ENST00000629359 6704 ntTSL 5 BASIC28.59■■■□□ 2.17
RTF1Q92541 PCSK1N-201ENST00000218230 1050 ntAPPRIS P1 TSL 1 (best) BASIC28.59■■■□□ 2.17
RTF1Q92541 NXT1-201ENST00000254998 1123 ntAPPRIS P1 TSL 1 (best) BASIC28.59■■■□□ 2.17
RTF1Q92541 LY6E-201ENST00000292494 1181 ntAPPRIS P2 TSL 1 (best) BASIC28.59■■■□□ 2.17
RTF1Q92541 GUK1-207ENST00000366726 873 ntAPPRIS P3 TSL 3 BASIC28.59■■■□□ 2.17
RTF1Q92541 CENPVL3-201ENST00000417339 864 ntAPPRIS P1 BASIC28.59■■■□□ 2.17
RTF1Q92541 KRT18P5-201ENST00000436075 1291 ntBASIC28.59■■■□□ 2.17
RTF1Q92541 AC108002.2-201ENST00000519782 340 ntTSL 4 BASIC28.59■■■□□ 2.17
RTF1Q92541 ATOX1-207ENST00000524142 749 ntAPPRIS P1 TSL 5 BASIC28.59■■■□□ 2.17
RTF1Q92541 MIF4GD-211ENST00000580571 952 ntTSL 2 BASIC28.59■■■□□ 2.17
RTF1Q92541 SMUG1P1-201ENST00000590640 811 ntBASIC28.59■■■□□ 2.17
RTF1Q92541 KCNMA1-224ENST00000618048 1269 ntTSL 1 (best) BASIC28.59■■■□□ 2.17
RTF1Q92541 SLC35A2-212ENST00000634665 486 ntTSL 4 BASIC28.59■■■□□ 2.17
RTF1Q92541 AP1S1-201ENST00000337619 1306 ntAPPRIS P1 TSL 1 (best) BASIC28.59■■■□□ 2.17
RTF1Q92541 AC135048.1-201ENST00000566056 1318 ntTSL 2 BASIC28.59■■■□□ 2.17
RTF1Q92541 UQCR11-203ENST00000591899 1324 ntAPPRIS P1 TSL 1 (best) BASIC28.59■■■□□ 2.17
RTF1Q92541 GIT1-210ENST00000579937 2798 ntTSL 2 BASIC28.59■■■□□ 2.17
RTF1Q92541 HOXC8-201ENST00000040584 1889 ntAPPRIS P1 TSL 1 (best) BASIC28.59■■■□□ 2.17
RTF1Q92541 LINC00969-219ENST00000453324 1439 ntTSL 1 (best) BASIC28.59■■■□□ 2.17
RTF1Q92541 DCAF8-211ENST00000475733 1426 ntTSL 1 (best) BASIC28.59■■■□□ 2.17
Retrieved 100 of 98,524 protein–RNA pairs in 17.1 ms