Protein–RNA interactions for Protein: Q8N2C3

DEPDC4, DEP domain-containing protein 4, humanhuman

Predictions only

Length 294 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DEPDC4Q8N2C3 MSL1-204ENST00000578648 2267 ntTSL 5 BASIC20.28■□□□□ 0.84
DEPDC4Q8N2C3 IRF3-227ENST00000600911 1637 ntTSL 5 BASIC20.28■□□□□ 0.84
DEPDC4Q8N2C3 ST3GAL4-202ENST00000356132 1745 ntTSL 5 BASIC20.28■□□□□ 0.84
DEPDC4Q8N2C3 DALRD3-206ENST00000441576 1706 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
DEPDC4Q8N2C3 LRCH4-209ENST00000497245 2014 ntTSL 5 BASIC20.28■□□□□ 0.84
DEPDC4Q8N2C3 RITA1-202ENST00000549621 2041 ntAPPRIS P1 TSL 2 BASIC20.28■□□□□ 0.84
DEPDC4Q8N2C3 SYCE1-204ENST00000432597 1254 ntAPPRIS ALT2 TSL 1 (best) BASIC20.28■□□□□ 0.84
DEPDC4Q8N2C3 CHTF8-205ENST00000519520 856 ntTSL 2 BASIC20.28■□□□□ 0.84
DEPDC4Q8N2C3 TMEM218-215ENST00000532407 1103 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
DEPDC4Q8N2C3 GRAMD4P7-201ENST00000578182 1232 ntBASIC20.28■□□□□ 0.84
DEPDC4Q8N2C3 KLHL26-202ENST00000595182 522 ntTSL 4 BASIC20.28■□□□□ 0.84
DEPDC4Q8N2C3 HAUS7-211ENST00000626181 414 ntAPPRIS ALT2 TSL 5 BASIC20.28■□□□□ 0.84
DEPDC4Q8N2C3 ILDR2-206ENST00000528703 2446 ntAPPRIS ALT2 TSL 5 BASIC20.28■□□□□ 0.84
DEPDC4Q8N2C3 ARID1B-220ENST00000636930 8246 ntAPPRIS ALT2 TSL 2 BASIC20.28■□□□□ 0.84
DEPDC4Q8N2C3 PCSK6-217ENST00000618548 4269 ntAPPRIS ALT2 TSL 1 (best) BASIC20.27■□□□□ 0.84
DEPDC4Q8N2C3 PTGER3-204ENST00000356595 1943 ntAPPRIS P4 TSL 1 (best) BASIC20.27■□□□□ 0.84
DEPDC4Q8N2C3 PTGER3-207ENST00000370931 1914 ntAPPRIS ALT2 TSL 1 (best) BASIC20.27■□□□□ 0.84
DEPDC4Q8N2C3 AC009126.1-201ENST00000501338 2245 ntTSL 2 BASIC20.27■□□□□ 0.84
DEPDC4Q8N2C3 LTK-201ENST00000263800 3046 ntAPPRIS P4 TSL 1 (best) BASIC20.27■□□□□ 0.84
DEPDC4Q8N2C3 HUNK-201ENST00000270112 7385 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
DEPDC4Q8N2C3 APLP1-203ENST00000586861 2052 ntTSL 2 BASIC20.27■□□□□ 0.84
DEPDC4Q8N2C3 GADD45GIP1-201ENST00000316939 1782 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
DEPDC4Q8N2C3 FEZ1-202ENST00000366139 1053 ntTSL 2 BASIC20.27■□□□□ 0.84
DEPDC4Q8N2C3 AQP1-202ENST00000409611 1140 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
DEPDC4Q8N2C3 AC090241.2-201ENST00000602329 432 ntTSL 4 BASIC20.27■□□□□ 0.84
DEPDC4Q8N2C3 LSM14B-201ENST00000279068 2548 ntAPPRIS P1 TSL 5 BASIC20.27■□□□□ 0.84
DEPDC4Q8N2C3 ADORA2A-AS1-203ENST00000427813 2027 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
DEPDC4Q8N2C3 ZNF652-202ENST00000430262 4701 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
DEPDC4Q8N2C3 STARD3NL-201ENST00000009041 1728 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.83
DEPDC4Q8N2C3 CNTFR-202ENST00000378980 2052 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
DEPDC4Q8N2C3 CDKN1C-202ENST00000414822 2051 ntAPPRIS P3 TSL 1 (best) BASIC20.26■□□□□ 0.83
DEPDC4Q8N2C3 SLCO3A1-202ENST00000424469 2705 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
DEPDC4Q8N2C3 MGAT5B-209ENST00000569840 4492 ntAPPRIS ALT1 TSL 5 BASIC20.26■□□□□ 0.83
DEPDC4Q8N2C3 MED17-221ENST00000639724 2317 ntTSL 5 BASIC20.26■□□□□ 0.83
DEPDC4Q8N2C3 FBXW4P1-201ENST00000426721 2239 ntBASIC20.26■□□□□ 0.83
DEPDC4Q8N2C3 ILDR2-204ENST00000525740 2242 ntTSL 5 BASIC20.26■□□□□ 0.83
DEPDC4Q8N2C3 HEXB-201ENST00000261416 1901 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
DEPDC4Q8N2C3 PUF60-203ENST00000453551 1842 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
DEPDC4Q8N2C3 KRT16P3-201ENST00000439127 1283 ntBASIC20.26■□□□□ 0.83
DEPDC4Q8N2C3 TSPY9P-201ENST00000440215 945 ntBASIC20.26■□□□□ 0.83
DEPDC4Q8N2C3 TSPY11P-201ENST00000442607 1045 ntBASIC20.26■□□□□ 0.83
DEPDC4Q8N2C3 OSBPL10-204ENST00000438237 2624 ntAPPRIS ALT2 TSL 2 BASIC20.26■□□□□ 0.83
DEPDC4Q8N2C3 ZNF428-201ENST00000300811 1412 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
DEPDC4Q8N2C3 FBXO25-203ENST00000352684 2360 ntTSL 5 BASIC20.26■□□□□ 0.83
DEPDC4Q8N2C3 D2HGDH-201ENST00000321264 2617 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
DEPDC4Q8N2C3 BIN1-209ENST00000393040 2293 ntAPPRIS ALT2 TSL 1 (best) BASIC20.25■□□□□ 0.83
DEPDC4Q8N2C3 DTNB-207ENST00000405222 2273 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
DEPDC4Q8N2C3 PLEKHG4-201ENST00000360461 6782 ntAPPRIS P3 TSL 2 BASIC20.25■□□□□ 0.83
DEPDC4Q8N2C3 UTS2R-201ENST00000313135 1357 ntAPPRIS P1 BASIC20.25■□□□□ 0.83
DEPDC4Q8N2C3 EN1-201ENST00000295206 2457 ntAPPRIS P1 TSL 2 BASIC20.25■□□□□ 0.83
DEPDC4Q8N2C3 MT1E-201ENST00000306061 704 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
DEPDC4Q8N2C3 CUL4A-209ENST00000488558 1111 ntTSL 3 BASIC20.25■□□□□ 0.83
DEPDC4Q8N2C3 EIF3J-203ENST00000535391 925 ntTSL 2 BASIC20.25■□□□□ 0.83
DEPDC4Q8N2C3 NAA30-203ENST00000555166 1294 ntAPPRIS ALT2 TSL 2 BASIC20.25■□□□□ 0.83
DEPDC4Q8N2C3 AC092028.1-203ENST00000608262 953 ntBASIC20.25■□□□□ 0.83
DEPDC4Q8N2C3 AL353803.4-201ENST00000565882 1934 ntBASIC20.25■□□□□ 0.83
DEPDC4Q8N2C3 SIMC1-202ENST00000341199 2056 ntAPPRIS P3 TSL 2 BASIC20.25■□□□□ 0.83
DEPDC4Q8N2C3 ZIM2-201ENST00000593711 2083 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
DEPDC4Q8N2C3 DPH7-201ENST00000277540 1847 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
DEPDC4Q8N2C3 TRIM28-201ENST00000253024 2960 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
DEPDC4Q8N2C3 RNF149-201ENST00000295317 2458 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
DEPDC4Q8N2C3 MAST2-201ENST00000361297 5738 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
DEPDC4Q8N2C3 AC080038.3-201ENST00000623346 1952 ntBASIC20.24■□□□□ 0.83
DEPDC4Q8N2C3 SPRN-201ENST00000414069 3128 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
DEPDC4Q8N2C3 TMC7-205ENST00000569532 2738 ntTSL 2 BASIC20.24■□□□□ 0.83
DEPDC4Q8N2C3 ASPSCR1-208ENST00000580534 1776 ntTSL 2 BASIC20.23■□□□□ 0.83
DEPDC4Q8N2C3 LCK-214ENST00000619559 2099 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
DEPDC4Q8N2C3 ZNF669-201ENST00000343381 1951 ntAPPRIS P3 TSL 1 (best) BASIC20.23■□□□□ 0.83
DEPDC4Q8N2C3 DRAP1-201ENST00000312515 989 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
DEPDC4Q8N2C3 CHKB-AS1-201ENST00000380711 578 ntTSL 2 BASIC20.23■□□□□ 0.83
DEPDC4Q8N2C3 HMGA2-202ENST00000393577 611 ntTSL 3 BASIC20.23■□□□□ 0.83
DEPDC4Q8N2C3 MEF2A-207ENST00000558812 2186 ntTSL 2 BASIC20.23■□□□□ 0.83
DEPDC4Q8N2C3 KCNMA1-252ENST00000639120 2308 ntTSL 5 BASIC20.23■□□□□ 0.83
DEPDC4Q8N2C3 NRL-203ENST00000397002 1976 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
DEPDC4Q8N2C3 ANAPC4-201ENST00000315368 2685 ntAPPRIS P3 TSL 1 (best) BASIC20.22■□□□□ 0.83
DEPDC4Q8N2C3 FGFR1-241ENST00000619564 5482 ntTSL 5 BASIC20.22■□□□□ 0.83
DEPDC4Q8N2C3 IQCJ-SCHIP1-203ENST00000476809 1780 ntAPPRIS ALT2 TSL 5 BASIC20.22■□□□□ 0.83
DEPDC4Q8N2C3 CXCL14-201ENST00000337225 1971 ntAPPRIS P2 TSL 1 (best) BASIC20.22■□□□□ 0.83
DEPDC4Q8N2C3 GGTA1P-203ENST00000481799 1487 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
DEPDC4Q8N2C3 UHRF1BP1L-202ENST00000356828 2023 ntAPPRIS ALT2 TSL 1 (best) BASIC20.22■□□□□ 0.83
DEPDC4Q8N2C3 RASGRP1-201ENST00000310803 5023 ntAPPRIS P2 TSL 1 (best) BASIC20.22■□□□□ 0.83
DEPDC4Q8N2C3 RASGRP1-204ENST00000539159 5021 ntAPPRIS ALT1 TSL 5 BASIC20.22■□□□□ 0.83
DEPDC4Q8N2C3 NIPA2-202ENST00000359727 1531 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
DEPDC4Q8N2C3 FMR1-208ENST00000440235 4271 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
DEPDC4Q8N2C3 AC243965.2-201ENST00000612576 2671 ntTSL 5 BASIC20.21■□□□□ 0.83
DEPDC4Q8N2C3 MTNR1B-201ENST00000257068 1565 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
DEPDC4Q8N2C3 TRAPPC5-204ENST00000596148 5498 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
DEPDC4Q8N2C3 CACNG6-203ENST00000352529 1635 ntTSL 5 BASIC20.21■□□□□ 0.83
DEPDC4Q8N2C3 TXNDC5-201ENST00000379757 2964 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
DEPDC4Q8N2C3 ZNF664-207ENST00000539644 5108 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
DEPDC4Q8N2C3 TRAPPC5-202ENST00000426877 765 ntAPPRIS P1 TSL 2 BASIC20.21■□□□□ 0.83
DEPDC4Q8N2C3 FAM173A-207ENST00000569529 1052 ntAPPRIS P3 TSL 1 (best) BASIC20.21■□□□□ 0.83
DEPDC4Q8N2C3 CRHR1-202ENST00000314537 2535 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
DEPDC4Q8N2C3 ZNF584-203ENST00000593920 2187 ntTSL 2 BASIC20.21■□□□□ 0.83
DEPDC4Q8N2C3 KIF12-207ENST00000640217 2194 ntAPPRIS P5 TSL 5 BASIC20.21■□□□□ 0.83
DEPDC4Q8N2C3 VSX1-205ENST00000429762 1977 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
DEPDC4Q8N2C3 MAGIX-207ENST00000615915 1757 ntAPPRIS ALT2 TSL 2 BASIC20.21■□□□□ 0.83
DEPDC4Q8N2C3 ANKRD13D-202ENST00000447274 2881 ntTSL 1 (best) BASIC20.2■□□□□ 0.83
DEPDC4Q8N2C3 NKX1-2-201ENST00000451024 3364 ntAPPRIS P1 TSL 5 BASIC20.2■□□□□ 0.82
DEPDC4Q8N2C3 CACNB1-201ENST00000344140 1889 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
Retrieved 100 of 98,524 protein–RNA pairs in 15.6 ms