Protein–RNA interactions for Protein: Q8IYX3

CCDC116, Coiled-coil domain-containing protein 116, humanhuman

Predictions only

Length 515 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC116Q8IYX3 YJEFN3-201ENST00000436027 878 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
CCDC116Q8IYX3 DUX4L19-201ENST00000557448 1267 ntBASIC20.63■□□□□ 0.89
CCDC116Q8IYX3 AC091982.4-201ENST00000623943 726 ntTSL 2 BASIC20.63■□□□□ 0.89
CCDC116Q8IYX3 LRRC34-201ENST00000446859 1718 ntAPPRIS ALT2 TSL 2 BASIC20.63■□□□□ 0.89
CCDC116Q8IYX3 DENND1A-201ENST00000373618 3003 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
CCDC116Q8IYX3 LSM14B-201ENST00000279068 2548 ntAPPRIS P1 TSL 5 BASIC20.63■□□□□ 0.89
CCDC116Q8IYX3 ZNF444-201ENST00000337080 2042 ntAPPRIS P3 TSL 1 (best) BASIC20.63■□□□□ 0.89
CCDC116Q8IYX3 ARMC6-201ENST00000269932 2412 ntAPPRIS P1 TSL 5 BASIC20.63■□□□□ 0.89
CCDC116Q8IYX3 GADD45GIP1-201ENST00000316939 1782 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
CCDC116Q8IYX3 AC090377.1-201ENST00000585691 1762 ntTSL 3 BASIC20.62■□□□□ 0.89
CCDC116Q8IYX3 DPH1-203ENST00000570477 1747 ntAPPRIS ALT2 TSL 2 BASIC20.62■□□□□ 0.89
CCDC116Q8IYX3 B3GALT6-201ENST00000379198 2777 ntAPPRIS P1 BASIC20.62■□□□□ 0.89
CCDC116Q8IYX3 PRICKLE4-201ENST00000394259 939 ntAPPRIS ALT2 TSL 5 BASIC20.62■□□□□ 0.89
CCDC116Q8IYX3 HES6-206ENST00000409574 738 ntTSL 2 BASIC20.62■□□□□ 0.89
CCDC116Q8IYX3 VAMP2-204ENST00000488857 874 ntAPPRIS ALT1 TSL 3 BASIC20.62■□□□□ 0.89
CCDC116Q8IYX3 FAHD1-201ENST00000382666 1964 ntTSL 2 BASIC20.62■□□□□ 0.89
CCDC116Q8IYX3 PPP1R12C-201ENST00000263433 2924 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
CCDC116Q8IYX3 ST7L-201ENST00000343210 1866 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
CCDC116Q8IYX3 NIPA2-205ENST00000539711 1412 ntTSL 2 BASIC20.61■□□□□ 0.89
CCDC116Q8IYX3 FIZ1-201ENST00000221665 2660 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
CCDC116Q8IYX3 AC008406.3-201ENST00000620001 1374 ntBASIC20.61■□□□□ 0.89
CCDC116Q8IYX3 RNF39-201ENST00000244360 2206 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
CCDC116Q8IYX3 TIMM50-201ENST00000314349 1612 ntAPPRIS P2 TSL 1 (best) BASIC20.61■□□□□ 0.89
CCDC116Q8IYX3 CCDC166-201ENST00000542437 1320 ntAPPRIS P1 TSL 2 BASIC20.61■□□□□ 0.89
CCDC116Q8IYX3 MRGBP-201ENST00000370487 2781 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
CCDC116Q8IYX3 NBL1-202ENST00000375136 2172 ntAPPRIS P3 TSL 1 (best) BASIC20.61■□□□□ 0.89
CCDC116Q8IYX3 MYD88-205ENST00000424893 1279 ntAPPRIS ALT2 TSL 1 (best) BASIC20.61■□□□□ 0.89
CCDC116Q8IYX3 LINC01632-201ENST00000615763 496 ntTSL 3 BASIC20.61■□□□□ 0.89
CCDC116Q8IYX3 CNTD2-202ENST00000430325 1817 ntAPPRIS P2 TSL 2 BASIC20.61■□□□□ 0.89
CCDC116Q8IYX3 IER2-201ENST00000292433 2085 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
CCDC116Q8IYX3 PLEKHO1-201ENST00000369124 2050 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
CCDC116Q8IYX3 ZBTB46-202ENST00000302995 2335 ntAPPRIS P1 TSL 2 BASIC20.61■□□□□ 0.89
CCDC116Q8IYX3 ST7L-221ENST00000490067 1780 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
CCDC116Q8IYX3 AC080038.3-201ENST00000623346 1952 ntBASIC20.61■□□□□ 0.89
CCDC116Q8IYX3 EYA2-203ENST00000357410 2465 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
CCDC116Q8IYX3 BIN1-207ENST00000357970 2497 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
CCDC116Q8IYX3 REXO1-201ENST00000170168 4591 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
CCDC116Q8IYX3 SIMC1-202ENST00000341199 2056 ntAPPRIS P3 TSL 2 BASIC20.6■□□□□ 0.89
CCDC116Q8IYX3 DPH7-201ENST00000277540 1847 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
CCDC116Q8IYX3 AC242852.2-201ENST00000615738 1807 ntBASIC20.6■□□□□ 0.89
CCDC116Q8IYX3 EPCAM-202ENST00000405271 1530 ntTSL 5 BASIC20.6■□□□□ 0.89
CCDC116Q8IYX3 TMEM80-201ENST00000397510 1094 ntAPPRIS P2 TSL 5 BASIC20.6■□□□□ 0.89
CCDC116Q8IYX3 NKX2-5-202ENST00000424406 1124 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
CCDC116Q8IYX3 RPRD1A-207ENST00000588737 1264 ntTSL 2 BASIC20.6■□□□□ 0.89
CCDC116Q8IYX3 AC005906.2-202ENST00000638821 2168 ntTSL 5 BASIC20.6■□□□□ 0.89
CCDC116Q8IYX3 ABHD16B-201ENST00000369916 1491 ntAPPRIS P1 BASIC20.6■□□□□ 0.89
CCDC116Q8IYX3 AL391650.1-201ENST00000448923 1468 ntAPPRIS P1 TSL 2 BASIC20.6■□□□□ 0.89
CCDC116Q8IYX3 HADH-201ENST00000309522 1912 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
CCDC116Q8IYX3 AC079834.2-201ENST00000609776 1949 ntBASIC20.6■□□□□ 0.89
CCDC116Q8IYX3 FAM185A-201ENST00000409231 1446 ntAPPRIS ALT2 TSL 2 BASIC20.6■□□□□ 0.89
CCDC116Q8IYX3 NUDT16L1-204ENST00000586536 1406 ntTSL 2 BASIC20.6■□□□□ 0.89
CCDC116Q8IYX3 UHRF1BP1L-202ENST00000356828 2023 ntAPPRIS ALT2 TSL 1 (best) BASIC20.6■□□□□ 0.89
CCDC116Q8IYX3 PLEKHJ1-206ENST00000587962 1311 ntTSL 2 BASIC20.59■□□□□ 0.89
CCDC116Q8IYX3 HEXB-201ENST00000261416 1901 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
CCDC116Q8IYX3 PYCARD-202ENST00000350605 696 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
CCDC116Q8IYX3 FAM66C-205ENST00000456135 1216 ntTSL 5 BASIC20.59■□□□□ 0.89
CCDC116Q8IYX3 AC093762.1-201ENST00000641981 837 ntAPPRIS P1 BASIC20.59■□□□□ 0.89
CCDC116Q8IYX3 FRAT1-201ENST00000371021 2649 ntAPPRIS P1 BASIC20.59■□□□□ 0.89
CCDC116Q8IYX3 FAM167A-204ENST00000528897 1620 ntAPPRIS P1 TSL 2 BASIC20.59■□□□□ 0.89
CCDC116Q8IYX3 LSR-203ENST00000360798 1963 ntTSL 2 BASIC20.59■□□□□ 0.89
CCDC116Q8IYX3 POU2F2-215ENST00000560398 1788 ntTSL 5 BASIC20.59■□□□□ 0.89
CCDC116Q8IYX3 LMF1-202ENST00000543238 2103 ntTSL 2 BASIC20.59■□□□□ 0.89
CCDC116Q8IYX3 EFCAB1-202ENST00000433756 2286 ntTSL 2 BASIC20.58■□□□□ 0.89
CCDC116Q8IYX3 ECEL1P1-201ENST00000373592 1742 ntBASIC20.58■□□□□ 0.89
CCDC116Q8IYX3 SNUPN-201ENST00000308588 1513 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
CCDC116Q8IYX3 TARBP2-201ENST00000266987 1867 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
CCDC116Q8IYX3 GAS2L1-206ENST00000610653 2238 ntTSL 1 (best) BASIC20.58■□□□□ 0.89
CCDC116Q8IYX3 RDX-204ENST00000528498 2511 ntTSL 1 (best) BASIC20.58■□□□□ 0.89
CCDC116Q8IYX3 CREG1-201ENST00000370509 1974 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
CCDC116Q8IYX3 WTAP-201ENST00000337387 1622 ntTSL 1 (best) BASIC20.58■□□□□ 0.89
CCDC116Q8IYX3 KDELR3-202ENST00000409006 931 ntTSL 1 (best) BASIC20.58■□□□□ 0.89
CCDC116Q8IYX3 AL138724.1-201ENST00000606771 1088 ntBASIC20.58■□□□□ 0.89
CCDC116Q8IYX3 XBP1-207ENST00000611155 1794 ntTSL 5 BASIC20.58■□□□□ 0.89
CCDC116Q8IYX3 PHLDB3-207ENST00000599242 2286 ntTSL 1 (best) BASIC20.58■□□□□ 0.88
CCDC116Q8IYX3 MTMR14-206ENST00000420925 1427 ntAPPRIS ALT2 TSL 2 BASIC20.58■□□□□ 0.88
CCDC116Q8IYX3 HOXA4-201ENST00000360046 1747 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.88
CCDC116Q8IYX3 AC004980.1-201ENST00000418663 2667 ntTSL 1 (best) BASIC20.58■□□□□ 0.88
CCDC116Q8IYX3 CASP9-203ENST00000375890 1351 ntTSL 2 BASIC20.58■□□□□ 0.88
CCDC116Q8IYX3 AF117829.1-201ENST00000519655 1398 ntTSL 5 BASIC20.58■□□□□ 0.88
CCDC116Q8IYX3 STK25-234ENST00000535007 2459 ntTSL 2 BASIC20.58■□□□□ 0.88
CCDC116Q8IYX3 GPRC5B-210ENST00000569847 1830 ntAPPRIS P2 TSL 2 BASIC20.57■□□□□ 0.88
CCDC116Q8IYX3 CPE-201ENST00000402744 2421 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
CCDC116Q8IYX3 STX4-202ENST00000394998 1498 ntTSL 2 BASIC20.57■□□□□ 0.88
CCDC116Q8IYX3 IRF3-207ENST00000593922 1494 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
CCDC116Q8IYX3 DBP-201ENST00000222122 2229 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
CCDC116Q8IYX3 ATP6V0E2-204ENST00000464662 513 ntAPPRIS P1 TSL 2 BASIC20.57■□□□□ 0.88
CCDC116Q8IYX3 SMIM29-205ENST00000468145 903 ntTSL 2 BASIC20.57■□□□□ 0.88
CCDC116Q8IYX3 SMIM29-207ENST00000481533 1053 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
CCDC116Q8IYX3 SF1-220ENST00000626028 704 ntTSL 2 BASIC20.57■□□□□ 0.88
CCDC116Q8IYX3 CNEP1R1-202ENST00000427478 2117 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
CCDC116Q8IYX3 ERI3-201ENST00000372257 1684 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
CCDC116Q8IYX3 PSKH1-202ENST00000570631 1509 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
CCDC116Q8IYX3 SLC25A29-202ENST00000392908 2242 ntTSL 2 BASIC20.57■□□□□ 0.88
CCDC116Q8IYX3 ANKHD1-221ENST00000616482 2064 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
CCDC116Q8IYX3 STX4-201ENST00000313843 1481 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
CCDC116Q8IYX3 ACTL10-201ENST00000330271 2028 ntAPPRIS P1 BASIC20.56■□□□□ 0.88
CCDC116Q8IYX3 PYGO2-201ENST00000368456 1306 ntTSL 2 BASIC20.56■□□□□ 0.88
CCDC116Q8IYX3 TOX2-201ENST00000341197 1880 ntAPPRIS P1 TSL 2 BASIC20.56■□□□□ 0.88
CCDC116Q8IYX3 LINC00526-201ENST00000581067 1875 ntBASIC20.56■□□□□ 0.88
CCDC116Q8IYX3 P4HTM-201ENST00000343546 2268 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
Retrieved 100 of 98,524 protein–RNA pairs in 28 ms