Protein–RNA interactions for Protein: Q6ZNA4

RNF111, E3 ubiquitin-protein ligase Arkadia, humanhuman

Predictions only

Length 994 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF111Q6ZNA4 LSM4-201ENST00000252816 986 ntTSL 2 BASIC21.24■□□□□ 0.99
RNF111Q6ZNA4 CLTA-206ENST00000466396 695 ntTSL 2 BASIC21.24■□□□□ 0.99
RNF111Q6ZNA4 MIR6724-1-201ENST00000616420 92 ntBASIC21.24■□□□□ 0.99
RNF111Q6ZNA4 MIR6724-2-201ENST00000616483 92 ntBASIC21.24■□□□□ 0.99
RNF111Q6ZNA4 MIR6724-4-201ENST00000617390 92 ntBASIC21.24■□□□□ 0.99
RNF111Q6ZNA4 MIR6724-3-201ENST00000622482 92 ntBASIC21.24■□□□□ 0.99
RNF111Q6ZNA4 C19orf12-201ENST00000323670 2464 ntAPPRIS P1 TSL 2 BASIC21.24■□□□□ 0.99
RNF111Q6ZNA4 SPHK1-210ENST00000592299 1821 ntAPPRIS P3 TSL 1 (best) BASIC21.24■□□□□ 0.99
RNF111Q6ZNA4 CACNG2-201ENST00000300105 2384 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
RNF111Q6ZNA4 ALDH1A3-203ENST00000557963 1670 ntBASIC21.24■□□□□ 0.99
RNF111Q6ZNA4 NAGPA-202ENST00000381955 2100 ntTSL 5 BASIC21.23■□□□□ 0.99
RNF111Q6ZNA4 SEPT5-201ENST00000383045 1588 ntTSL 5 BASIC21.23■□□□□ 0.99
RNF111Q6ZNA4 ECE2-203ENST00000359140 3147 ntTSL 1 (best) BASIC21.23■□□□□ 0.99
RNF111Q6ZNA4 CREB3L3-205ENST00000602257 1475 ntAPPRIS ALT2 TSL 1 (best) BASIC21.23■□□□□ 0.99
RNF111Q6ZNA4 CCDC7-201ENST00000277657 1899 ntAPPRIS P2 TSL 1 (best) BASIC21.23■□□□□ 0.99
RNF111Q6ZNA4 ST7L-201ENST00000343210 1866 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
RNF111Q6ZNA4 ENTPD4-201ENST00000356206 2097 ntTSL 1 (best) BASIC21.23■□□□□ 0.99
RNF111Q6ZNA4 ENTPD4-203ENST00000417069 2063 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
RNF111Q6ZNA4 SYT6-209ENST00000610222 1707 ntAPPRIS P1 TSL 5 BASIC21.23■□□□□ 0.99
RNF111Q6ZNA4 AC005703.6-201ENST00000623265 1329 ntBASIC21.23■□□□□ 0.99
RNF111Q6ZNA4 RASEF-201ENST00000340717 1765 ntTSL 2 BASIC21.23■□□□□ 0.99
RNF111Q6ZNA4 ZFYVE19-201ENST00000299173 1555 ntAPPRIS ALT2 TSL 1 (best) BASIC21.23■□□□□ 0.99
RNF111Q6ZNA4 HNRNPAB-208ENST00000515193 1595 ntAPPRIS ALT2 TSL 5 BASIC21.23■□□□□ 0.99
RNF111Q6ZNA4 RHCE-204ENST00000349320 1810 ntAPPRIS ALT2 TSL 2 BASIC21.22■□□□□ 0.99
RNF111Q6ZNA4 HSD11B1L-217ENST00000581521 1884 ntAPPRIS P3 TSL 5 BASIC21.22■□□□□ 0.99
RNF111Q6ZNA4 PON2-218ENST00000633531 1653 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
RNF111Q6ZNA4 PAQR6-202ENST00000335852 2117 ntTSL 2 BASIC21.22■□□□□ 0.99
RNF111Q6ZNA4 TULP1-202ENST00000322263 1941 ntTSL 1 (best) BASIC21.22■□□□□ 0.99
RNF111Q6ZNA4 SLC1A5-203ENST00000542575 2882 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
RNF111Q6ZNA4 TM9SF3-201ENST00000371142 6141 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
RNF111Q6ZNA4 DRAP1-201ENST00000312515 989 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
RNF111Q6ZNA4 TFPT-201ENST00000391757 774 ntTSL 5 BASIC21.22■□□□□ 0.99
RNF111Q6ZNA4 TFPT-202ENST00000391758 804 ntAPPRIS ALT2 TSL 1 (best) BASIC21.22■□□□□ 0.99
RNF111Q6ZNA4 TMEM147-203ENST00000392205 767 ntTSL 2 BASIC21.22■□□□□ 0.99
RNF111Q6ZNA4 AC090241.2-201ENST00000602329 432 ntTSL 4 BASIC21.22■□□□□ 0.99
RNF111Q6ZNA4 TFG-201ENST00000240851 1978 ntAPPRIS P3 TSL 1 (best) BASIC21.22■□□□□ 0.99
RNF111Q6ZNA4 AC080038.3-201ENST00000623346 1952 ntBASIC21.22■□□□□ 0.99
RNF111Q6ZNA4 ASPSCR1-202ENST00000306739 1843 ntAPPRIS P3 TSL 1 (best) BASIC21.22■□□□□ 0.99
RNF111Q6ZNA4 SLC25A1-201ENST00000215882 1648 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
RNF111Q6ZNA4 ZNF688-201ENST00000223459 2506 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
RNF111Q6ZNA4 RDX-204ENST00000528498 2511 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
RNF111Q6ZNA4 NUTF2-201ENST00000219169 2321 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
RNF111Q6ZNA4 TRAPPC5-202ENST00000426877 765 ntAPPRIS P1 TSL 2 BASIC21.21■□□□□ 0.99
RNF111Q6ZNA4 CHAC1-201ENST00000444189 1204 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
RNF111Q6ZNA4 TSPAN17-204ENST00000503045 1019 ntTSL 5 BASIC21.21■□□□□ 0.99
RNF111Q6ZNA4 DCK-201ENST00000286648 2716 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
RNF111Q6ZNA4 ZNF707-201ENST00000358656 2183 ntAPPRIS P1 TSL 2 BASIC21.21■□□□□ 0.99
RNF111Q6ZNA4 LPCAT4-201ENST00000314891 2262 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
RNF111Q6ZNA4 LOXL1-201ENST00000261921 2351 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
RNF111Q6ZNA4 EPN1-201ENST00000085079 2355 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
RNF111Q6ZNA4 AL121603.2-201ENST00000557373 2117 ntBASIC21.2■□□□□ 0.98
RNF111Q6ZNA4 SPIRE2-202ENST00000393062 2172 ntAPPRIS ALT2 TSL 1 (best) BASIC21.2■□□□□ 0.98
RNF111Q6ZNA4 LHPP-201ENST00000368839 1522 ntTSL 1 (best) BASIC21.2■□□□□ 0.98
RNF111Q6ZNA4 GTPBP6-201ENST00000326153 1907 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
RNF111Q6ZNA4 SAMD13-205ENST00000370673 1567 ntTSL 2 BASIC21.2■□□□□ 0.98
RNF111Q6ZNA4 B3GAT3-201ENST00000265471 1641 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
RNF111Q6ZNA4 SPAG16-201ENST00000272898 1059 ntTSL 5 BASIC21.2■□□□□ 0.98
RNF111Q6ZNA4 SIGMAR1-201ENST00000277010 1656 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
RNF111Q6ZNA4 E4F1-204ENST00000564139 2493 ntTSL 1 (best) BASIC21.2■□□□□ 0.98
RNF111Q6ZNA4 TTC34-202ENST00000637179 1775 ntAPPRIS P2 TSL 5 BASIC21.2■□□□□ 0.98
RNF111Q6ZNA4 ACHE-203ENST00000411582 2179 ntTSL 1 (best) BASIC21.2■□□□□ 0.98
RNF111Q6ZNA4 DOK3-201ENST00000312943 2292 ntTSL 1 (best) BASIC21.2■□□□□ 0.98
RNF111Q6ZNA4 SLC19A1-209ENST00000485649 1896 ntAPPRIS ALT2 TSL 2 BASIC21.2■□□□□ 0.98
RNF111Q6ZNA4 PTGER3-204ENST00000356595 1943 ntAPPRIS P4 TSL 1 (best) BASIC21.19■□□□□ 0.98
RNF111Q6ZNA4 PTGER3-207ENST00000370931 1914 ntAPPRIS ALT2 TSL 1 (best) BASIC21.19■□□□□ 0.98
RNF111Q6ZNA4 EI24-204ENST00000527235 1625 ntTSL 5 BASIC21.19■□□□□ 0.98
RNF111Q6ZNA4 ACHE-201ENST00000241069 2172 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
RNF111Q6ZNA4 AP002893.1-201ENST00000528885 684 ntTSL 2 BASIC21.19■□□□□ 0.98
RNF111Q6ZNA4 CIZ1-203ENST00000357558 2907 ntAPPRIS ALT2 TSL 5 BASIC21.19■□□□□ 0.98
RNF111Q6ZNA4 SNAP23-202ENST00000349777 2480 ntTSL 2 BASIC21.19■□□□□ 0.98
RNF111Q6ZNA4 KCNC3-201ENST00000376959 5447 ntAPPRIS ALT2 TSL 5 BASIC21.19■□□□□ 0.98
RNF111Q6ZNA4 DAZAP2-201ENST00000412716 2598 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
RNF111Q6ZNA4 CCM2-206ENST00000474617 1532 ntTSL 5 BASIC21.19■□□□□ 0.98
RNF111Q6ZNA4 PABPC1L2A-201ENST00000373519 2237 ntAPPRIS P1 BASIC21.19■□□□□ 0.98
RNF111Q6ZNA4 SHOX2-203ENST00000441443 3038 ntAPPRIS ALT2 TSL 5 BASIC21.18■□□□□ 0.98
RNF111Q6ZNA4 ACOT1-201ENST00000311148 1713 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
RNF111Q6ZNA4 PTPN13-205ENST00000502971 1708 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
RNF111Q6ZNA4 DVL3-201ENST00000313143 5254 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
RNF111Q6ZNA4 DNAJB5-203ENST00000453597 2589 ntTSL 2 BASIC21.18■□□□□ 0.98
RNF111Q6ZNA4 SLC35F4-206ENST00000556826 1908 ntAPPRIS P1 TSL 5 BASIC21.18■□□□□ 0.98
RNF111Q6ZNA4 PELI3-202ENST00000349459 2783 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
RNF111Q6ZNA4 SPNS1-203ENST00000334536 2027 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
RNF111Q6ZNA4 PNRC1-201ENST00000336032 2065 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
RNF111Q6ZNA4 SLC16A10-206ENST00000612036 1231 ntTSL 5 BASIC21.18■□□□□ 0.98
RNF111Q6ZNA4 WNT10A-201ENST00000258411 2547 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
RNF111Q6ZNA4 KCTD13-207ENST00000568000 2528 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
RNF111Q6ZNA4 SPANXA2-OT1-201ENST00000622372 1686 ntTSL 2 BASIC21.18■□□□□ 0.98
RNF111Q6ZNA4 DUX4-203ENST00000565211 1710 ntAPPRIS P2 TSL 1 (best) BASIC21.18■□□□□ 0.98
RNF111Q6ZNA4 CCDC157-202ENST00000399824 1759 ntAPPRIS ALT2 TSL 1 (best) BASIC21.18■□□□□ 0.98
RNF111Q6ZNA4 TBC1D22A-202ENST00000355704 1886 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
RNF111Q6ZNA4 PABPC1L2B-201ENST00000373521 2197 ntAPPRIS P1 BASIC21.17■□□□□ 0.98
RNF111Q6ZNA4 S1PR5-202ENST00000439028 2191 ntAPPRIS P1 TSL 2 BASIC21.17■□□□□ 0.98
RNF111Q6ZNA4 LSM14B-201ENST00000279068 2548 ntAPPRIS P1 TSL 5 BASIC21.17■□□□□ 0.98
RNF111Q6ZNA4 MOSPD3-204ENST00000424091 1115 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
RNF111Q6ZNA4 DCAF4-206ENST00000509153 1521 ntAPPRIS ALT2 TSL 2 BASIC21.17■□□□□ 0.98
RNF111Q6ZNA4 ADGRA2-202ENST00000412232 5651 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
RNF111Q6ZNA4 FAH-202ENST00000407106 2152 ntAPPRIS P1 TSL 5 BASIC21.17■□□□□ 0.98
RNF111Q6ZNA4 PILRB-207ENST00000448382 2314 ntTSL 2 BASIC21.17■□□□□ 0.98
RNF111Q6ZNA4 CRHR1-202ENST00000314537 2535 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
RNF111Q6ZNA4 ZNF48-201ENST00000320159 3234 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
Retrieved 100 of 98,524 protein–RNA pairs in 11.2 ms