Protein–RNA interactions for Protein: Q6NUP7

PPP4R4, Serine/threonine-protein phosphatase 4 regulatory subunit 4, humanhuman

Predictions only

Length 873 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PPP4R4Q6NUP7 SLC16A10-202ENST00000368851 2508 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
PPP4R4Q6NUP7 TGIF1-206ENST00000405385 1689 ntTSL 2 BASIC20.88■□□□□ 0.93
PPP4R4Q6NUP7 LZTS3-201ENST00000329152 5257 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
PPP4R4Q6NUP7 RITA1-202ENST00000549621 2041 ntAPPRIS P1 TSL 2 BASIC20.88■□□□□ 0.93
PPP4R4Q6NUP7 RARA-201ENST00000254066 2414 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
PPP4R4Q6NUP7 P4HTM-201ENST00000343546 2268 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
PPP4R4Q6NUP7 CIZ1-204ENST00000372938 2984 ntAPPRIS P3 TSL 1 (best) BASIC20.88■□□□□ 0.93
PPP4R4Q6NUP7 SP9-201ENST00000394967 2554 ntAPPRIS P1 TSL 5 BASIC20.88■□□□□ 0.93
PPP4R4Q6NUP7 SYT6-209ENST00000610222 1707 ntAPPRIS P1 TSL 5 BASIC20.87■□□□□ 0.93
PPP4R4Q6NUP7 YY1AP1-214ENST00000407221 2705 ntAPPRIS ALT2 TSL 2 BASIC20.87■□□□□ 0.93
PPP4R4Q6NUP7 LOXL1-AS1-210ENST00000567257 2358 ntTSL 2 BASIC20.87■□□□□ 0.93
PPP4R4Q6NUP7 CXCL14-201ENST00000337225 1971 ntAPPRIS P2 TSL 1 (best) BASIC20.87■□□□□ 0.93
PPP4R4Q6NUP7 FMR1-208ENST00000440235 4271 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
PPP4R4Q6NUP7 TTLL1-201ENST00000266254 1645 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
PPP4R4Q6NUP7 EBF4-202ENST00000380648 2910 ntAPPRIS P2 TSL 5 BASIC20.87■□□□□ 0.93
PPP4R4Q6NUP7 ZXDC-201ENST00000336332 2579 ntAPPRIS ALT2 TSL 1 (best) BASIC20.87■□□□□ 0.93
PPP4R4Q6NUP7 U2AF1-202ENST00000380276 940 ntAPPRIS ALT2 TSL 1 (best) BASIC20.87■□□□□ 0.93
PPP4R4Q6NUP7 ROCK2-202ENST00000315872 8292 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
PPP4R4Q6NUP7 ZDHHC8P1-201ENST00000255890 2382 ntTSL 2 BASIC20.87■□□□□ 0.93
PPP4R4Q6NUP7 MANEAL-203ENST00000397631 2327 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
PPP4R4Q6NUP7 TFAP2A-202ENST00000379608 2576 ntAPPRIS ALT1 TSL 1 (best) BASIC20.87■□□□□ 0.93
PPP4R4Q6NUP7 BIN1-209ENST00000393040 2293 ntAPPRIS ALT2 TSL 1 (best) BASIC20.87■□□□□ 0.93
PPP4R4Q6NUP7 TFG-201ENST00000240851 1978 ntAPPRIS P3 TSL 1 (best) BASIC20.86■□□□□ 0.93
PPP4R4Q6NUP7 WRAP73-201ENST00000270708 1665 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
PPP4R4Q6NUP7 SUMF1-201ENST00000272902 2159 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
PPP4R4Q6NUP7 ZDHHC16-203ENST00000353979 1647 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
PPP4R4Q6NUP7 TMEM25-205ENST00000411589 2442 ntAPPRIS ALT2 TSL 2 BASIC20.86■□□□□ 0.93
PPP4R4Q6NUP7 ANAPC13-201ENST00000354910 1209 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
PPP4R4Q6NUP7 NAXE-202ENST00000368234 901 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
PPP4R4Q6NUP7 GUSBP5-201ENST00000418136 578 ntBASIC20.86■□□□□ 0.93
PPP4R4Q6NUP7 AC137630.3-201ENST00000607245 391 ntBASIC20.86■□□□□ 0.93
PPP4R4Q6NUP7 CCDC157-202ENST00000399824 1759 ntAPPRIS ALT2 TSL 1 (best) BASIC20.86■□□□□ 0.93
PPP4R4Q6NUP7 PALM-208ENST00000592155 2272 ntTSL 4 BASIC20.86■□□□□ 0.93
PPP4R4Q6NUP7 SLC35F4-206ENST00000556826 1908 ntAPPRIS P1 TSL 5 BASIC20.86■□□□□ 0.93
PPP4R4Q6NUP7 C14orf80-204ENST00000392522 1630 ntAPPRIS P4 TSL 5 BASIC20.86■□□□□ 0.93
PPP4R4Q6NUP7 AC079630.1-202ENST00000618127 1840 ntBASIC20.85■□□□□ 0.93
PPP4R4Q6NUP7 PLEKHA8-203ENST00000396259 2840 ntTSL 2 BASIC20.85■□□□□ 0.93
PPP4R4Q6NUP7 CD63-202ENST00000420846 981 ntAPPRIS P1 TSL 5 BASIC20.85■□□□□ 0.93
PPP4R4Q6NUP7 KLHL26-202ENST00000595182 522 ntTSL 4 BASIC20.85■□□□□ 0.93
PPP4R4Q6NUP7 PRMT5-228ENST00000627278 129 ntTSL 5 BASIC20.85■□□□□ 0.93
PPP4R4Q6NUP7 PNRC1-201ENST00000336032 2065 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
PPP4R4Q6NUP7 CCDC130-201ENST00000221554 1792 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
PPP4R4Q6NUP7 SLC25A47-202ENST00000557052 1552 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
PPP4R4Q6NUP7 SLC4A4-201ENST00000264485 5852 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
PPP4R4Q6NUP7 NIPSNAP2-205ENST00000446778 1882 ntTSL 2 BASIC20.84■□□□□ 0.93
PPP4R4Q6NUP7 UFD1-201ENST00000263202 1814 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
PPP4R4Q6NUP7 FEZ1-202ENST00000366139 1053 ntTSL 2 BASIC20.84■□□□□ 0.93
PPP4R4Q6NUP7 CENPX-202ENST00000392359 805 ntAPPRIS P1 TSL 2 BASIC20.84■□□□□ 0.93
PPP4R4Q6NUP7 SYCE1-204ENST00000432597 1254 ntAPPRIS ALT2 TSL 1 (best) BASIC20.84■□□□□ 0.93
PPP4R4Q6NUP7 PALM-202ENST00000338448 2725 ntAPPRIS P4 TSL 1 (best) BASIC20.84■□□□□ 0.93
PPP4R4Q6NUP7 EI24-204ENST00000527235 1625 ntTSL 5 BASIC20.84■□□□□ 0.93
PPP4R4Q6NUP7 LRRC14-201ENST00000292524 5328 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
PPP4R4Q6NUP7 KCNQ5-201ENST00000342056 6688 ntAPPRIS ALT1 TSL 5 BASIC20.84■□□□□ 0.93
PPP4R4Q6NUP7 ZYG11B-202ENST00000545132 2294 ntTSL 2 BASIC20.84■□□□□ 0.93
PPP4R4Q6NUP7 DHRS11-215ENST00000618403 1598 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
PPP4R4Q6NUP7 COMT-202ENST00000361682 2437 ntAPPRIS P3 TSL 1 (best) BASIC20.84■□□□□ 0.93
PPP4R4Q6NUP7 NRL-202ENST00000396997 1517 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
PPP4R4Q6NUP7 STIM2-204ENST00000467087 5154 ntAPPRIS ALT2 TSL 1 (best) BASIC20.83■□□□□ 0.93
PPP4R4Q6NUP7 ARSB-201ENST00000264914 5327 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
PPP4R4Q6NUP7 NAE1-202ENST00000359087 1825 ntTSL 2 BASIC20.83■□□□□ 0.93
PPP4R4Q6NUP7 PAQR6-202ENST00000335852 2117 ntTSL 2 BASIC20.83■□□□□ 0.93
PPP4R4Q6NUP7 SH3YL1-201ENST00000356150 1763 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
PPP4R4Q6NUP7 IQCJ-SCHIP1-203ENST00000476809 1780 ntAPPRIS ALT2 TSL 5 BASIC20.83■□□□□ 0.93
PPP4R4Q6NUP7 ZEB1-AS1-205ENST00000605946 382 ntTSL 5 BASIC20.83■□□□□ 0.93
PPP4R4Q6NUP7 DYRK3-202ENST00000367108 2218 ntTSL 1 (best) BASIC20.83■□□□□ 0.93
PPP4R4Q6NUP7 PXK-202ENST00000356151 2037 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.92
PPP4R4Q6NUP7 CAMK2N2-201ENST00000296238 1362 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.92
PPP4R4Q6NUP7 TMUB1-201ENST00000297533 1353 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.92
PPP4R4Q6NUP7 SPANXA2-OT1-201ENST00000622372 1686 ntTSL 2 BASIC20.83■□□□□ 0.92
PPP4R4Q6NUP7 FGFR2-211ENST00000369059 3003 ntTSL 5 BASIC20.83■□□□□ 0.92
PPP4R4Q6NUP7 UBA5-211ENST00000493720 2058 ntTSL 5 BASIC20.82■□□□□ 0.92
PPP4R4Q6NUP7 IGSF21-201ENST00000251296 1943 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
PPP4R4Q6NUP7 SAV1-201ENST00000324679 3063 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
PPP4R4Q6NUP7 PABPC1L2B-201ENST00000373521 2197 ntAPPRIS P1 BASIC20.82■□□□□ 0.92
PPP4R4Q6NUP7 SPNS1-203ENST00000334536 2027 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
PPP4R4Q6NUP7 REXO1-201ENST00000170168 4591 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
PPP4R4Q6NUP7 LINC01123-202ENST00000419296 2436 ntTSL 2 BASIC20.82■□□□□ 0.92
PPP4R4Q6NUP7 MT1E-201ENST00000306061 704 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
PPP4R4Q6NUP7 LRRC1-201ENST00000370882 808 ntTSL 3 BASIC20.82■□□□□ 0.92
PPP4R4Q6NUP7 HMGA2-202ENST00000393577 611 ntTSL 3 BASIC20.82■□□□□ 0.92
PPP4R4Q6NUP7 AC090587.2-201ENST00000430222 527 ntTSL 2 BASIC20.82■□□□□ 0.92
PPP4R4Q6NUP7 AC080038.3-201ENST00000623346 1952 ntBASIC20.82■□□□□ 0.92
PPP4R4Q6NUP7 ZNF746-203ENST00000461958 5051 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
PPP4R4Q6NUP7 LSM14B-201ENST00000279068 2548 ntAPPRIS P1 TSL 5 BASIC20.82■□□□□ 0.92
PPP4R4Q6NUP7 CMTM4-201ENST00000330687 3414 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
PPP4R4Q6NUP7 USF2-201ENST00000222305 1634 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
PPP4R4Q6NUP7 FLT1-207ENST00000615840 6453 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
PPP4R4Q6NUP7 TCP1-202ENST00000392168 1878 ntTSL 5 BASIC20.81■□□□□ 0.92
PPP4R4Q6NUP7 LPAR1-201ENST00000358883 2687 ntAPPRIS P2 TSL 2 BASIC20.81■□□□□ 0.92
PPP4R4Q6NUP7 SEPT2-205ENST00000401990 1734 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
PPP4R4Q6NUP7 MDK-202ENST00000395565 951 ntAPPRIS P2 TSL 2 BASIC20.81■□□□□ 0.92
PPP4R4Q6NUP7 MRPS34-202ENST00000397375 1024 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
PPP4R4Q6NUP7 MAGI2-AS3-201ENST00000414797 1072 ntTSL 2 BASIC20.81■□□□□ 0.92
PPP4R4Q6NUP7 C14orf80-211ENST00000450383 1107 ntAPPRIS ALT2 TSL 5 BASIC20.81■□□□□ 0.92
PPP4R4Q6NUP7 CREM-229ENST00000474362 1030 ntTSL 2 BASIC20.81■□□□□ 0.92
PPP4R4Q6NUP7 NAA30-203ENST00000555166 1294 ntAPPRIS ALT2 TSL 2 BASIC20.81■□□□□ 0.92
PPP4R4Q6NUP7 GRAMD4P7-201ENST00000578182 1232 ntBASIC20.81■□□□□ 0.92
PPP4R4Q6NUP7 AUTS2-201ENST00000342771 6173 ntAPPRIS P3 TSL 1 (best) BASIC20.81■□□□□ 0.92
PPP4R4Q6NUP7 NPHS2-201ENST00000367615 1855 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
PPP4R4Q6NUP7 MAP7D1-201ENST00000316156 3456 ntAPPRIS ALT2 TSL 1 (best) BASIC20.81■□□□□ 0.92
Retrieved 100 of 98,524 protein–RNA pairs in 28.2 ms