Protein–RNA interactions for Protein: Q3V6T2

CCDC88A, Girdin, humanhuman

Predictions only

Length 1,871 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88AQ3V6T2 PPP1R1B-201ENST00000254079 1845 ntAPPRIS P1 TSL 1 (best) BASIC27.16■■□□□ 1.94
CCDC88AQ3V6T2 PPCS-202ENST00000372560 793 ntTSL 1 (best) BASIC27.16■■□□□ 1.94
CCDC88AQ3V6T2 KANSL1-AS1-201ENST00000398275 517 ntTSL 1 (best) BASIC27.16■■□□□ 1.94
CCDC88AQ3V6T2 KHDRBS1-204ENST00000492989 1215 ntTSL 1 (best) BASIC27.16■■□□□ 1.94
CCDC88AQ3V6T2 FIZ1-205ENST00000592585 489 ntTSL 5 BASIC27.16■■□□□ 1.94
CCDC88AQ3V6T2 CERKL-204ENST00000374970 1392 ntTSL 1 (best) BASIC27.16■■□□□ 1.94
CCDC88AQ3V6T2 RNASEH2B-201ENST00000336617 1629 ntAPPRIS P1 TSL 1 (best) BASIC27.16■■□□□ 1.94
CCDC88AQ3V6T2 CCDC151-202ENST00000586836 1867 ntTSL 2 BASIC27.16■■□□□ 1.94
CCDC88AQ3V6T2 ANKRD11-217ENST00000613312 1584 ntAPPRIS ALT2 TSL 5 BASIC27.16■■□□□ 1.94
CCDC88AQ3V6T2 AP002761.3-201ENST00000546324 1695 ntTSL 2 BASIC27.15■■□□□ 1.94
CCDC88AQ3V6T2 SPRED3-204ENST00000587013 1539 ntTSL 5 BASIC27.15■■□□□ 1.94
CCDC88AQ3V6T2 C19orf73-201ENST00000408991 744 ntAPPRIS P1 BASIC27.15■■□□□ 1.94
CCDC88AQ3V6T2 FAM66D-201ENST00000434078 918 ntTSL 5 BASIC27.15■■□□□ 1.94
CCDC88AQ3V6T2 DUX4L16-201ENST00000555130 1264 ntBASIC27.15■■□□□ 1.94
CCDC88AQ3V6T2 IGFBP3-211ENST00000615754 792 ntTSL 5 BASIC27.15■■□□□ 1.94
CCDC88AQ3V6T2 AC093762.3-201ENST00000641918 318 ntAPPRIS P1 BASIC27.15■■□□□ 1.94
CCDC88AQ3V6T2 NMI-201ENST00000243346 1623 ntAPPRIS P1 TSL 1 (best) BASIC27.15■■□□□ 1.94
CCDC88AQ3V6T2 SLC35A2-210ENST00000616181 1614 ntTSL 2 BASIC27.15■■□□□ 1.94
CCDC88AQ3V6T2 CKMT1B-207ENST00000441322 1747 ntAPPRIS P1 TSL 1 (best) BASIC27.15■■□□□ 1.94
CCDC88AQ3V6T2 WT1-210ENST00000639563 1494 ntAPPRIS ALT2 TSL 1 (best) BASIC27.15■■□□□ 1.94
CCDC88AQ3V6T2 TBL2-222ENST00000610724 2165 ntTSL 5 BASIC27.15■■□□□ 1.94
CCDC88AQ3V6T2 STK19-202ENST00000375333 1557 ntAPPRIS P3 TSL 1 (best) BASIC27.15■■□□□ 1.94
CCDC88AQ3V6T2 PLEKHA8-202ENST00000396257 1907 ntTSL 1 (best) BASIC27.15■■□□□ 1.94
CCDC88AQ3V6T2 FAM167A-204ENST00000528897 1620 ntAPPRIS P1 TSL 2 BASIC27.15■■□□□ 1.94
CCDC88AQ3V6T2 CCNE1-201ENST00000262643 2043 ntAPPRIS P1 TSL 1 (best) BASIC27.14■■□□□ 1.94
CCDC88AQ3V6T2 RARA-203ENST00000394086 2008 ntTSL 2 BASIC27.14■■□□□ 1.94
CCDC88AQ3V6T2 C10orf95-201ENST00000625129 1469 ntAPPRIS P1 TSL 1 (best) BASIC27.14■■□□□ 1.94
CCDC88AQ3V6T2 RILP-201ENST00000301336 1771 ntAPPRIS P1 TSL 1 (best) BASIC27.14■■□□□ 1.94
CCDC88AQ3V6T2 NAAA-204ENST00000507187 1750 ntTSL 1 (best) BASIC27.14■■□□□ 1.94
CCDC88AQ3V6T2 SH3GL1-201ENST00000269886 2516 ntAPPRIS P1 TSL 1 (best) BASIC27.14■■□□□ 1.94
CCDC88AQ3V6T2 BX005040.4-201ENST00000637145 1518 ntBASIC27.14■■□□□ 1.94
CCDC88AQ3V6T2 ZNF205-201ENST00000219091 1947 ntAPPRIS P1 TSL 5 BASIC27.14■■□□□ 1.94
CCDC88AQ3V6T2 TMEM185A-207ENST00000600449 2840 ntAPPRIS P1 TSL 1 (best) BASIC27.14■■□□□ 1.94
CCDC88AQ3V6T2 UCHL1-201ENST00000284440 1172 ntAPPRIS P1 TSL 1 (best) BASIC27.14■■□□□ 1.94
CCDC88AQ3V6T2 SERTAD4-AS1-201ENST00000437764 726 ntTSL 1 (best) BASIC27.14■■□□□ 1.94
CCDC88AQ3V6T2 AC099522.1-201ENST00000505955 881 ntTSL 3 BASIC27.14■■□□□ 1.94
CCDC88AQ3V6T2 UCHL1-210ENST00000512788 785 ntTSL 3 BASIC27.14■■□□□ 1.94
CCDC88AQ3V6T2 DET1-205ENST00000558413 583 ntTSL 4 BASIC27.14■■□□□ 1.94
CCDC88AQ3V6T2 LITAF-205ENST00000570904 1118 ntAPPRIS P1 TSL 1 (best) BASIC27.14■■□□□ 1.94
CCDC88AQ3V6T2 ZNF561-AS1-205ENST00000588765 579 ntTSL 4 BASIC27.14■■□□□ 1.94
CCDC88AQ3V6T2 SPANXA2-OT1-201ENST00000622372 1686 ntTSL 2 BASIC27.14■■□□□ 1.93
CCDC88AQ3V6T2 RAB28-203ENST00000338176 1787 ntTSL 3 BASIC27.14■■□□□ 1.93
CCDC88AQ3V6T2 ARFIP2-202ENST00000396777 1868 ntAPPRIS P1 TSL 2 BASIC27.14■■□□□ 1.93
CCDC88AQ3V6T2 SEC22C-207ENST00000423701 1458 ntTSL 1 (best) BASIC27.13■■□□□ 1.93
CCDC88AQ3V6T2 PGPEP1L-201ENST00000378919 995 ntTSL 1 (best) BASIC27.13■■□□□ 1.93
CCDC88AQ3V6T2 LINC01124-201ENST00000409786 2117 ntBASIC27.13■■□□□ 1.93
CCDC88AQ3V6T2 AP000282.1-201ENST00000454622 682 ntTSL 2 BASIC27.13■■□□□ 1.93
CCDC88AQ3V6T2 FADS3-204ENST00000525588 1254 ntTSL 5 BASIC27.13■■□□□ 1.93
CCDC88AQ3V6T2 LAYN-209ENST00000533265 1703 ntTSL 5 BASIC27.13■■□□□ 1.93
CCDC88AQ3V6T2 CHST6-202ENST00000390664 2093 ntAPPRIS P1 TSL 1 (best) BASIC27.13■■□□□ 1.93
CCDC88AQ3V6T2 EPO-201ENST00000252723 1330 ntAPPRIS P1 TSL 1 (best) BASIC27.13■■□□□ 1.93
CCDC88AQ3V6T2 AL138781.1-201ENST00000566567 1274 ntBASIC27.13■■□□□ 1.93
CCDC88AQ3V6T2 DUX4L4-201ENST00000566884 1269 ntBASIC27.13■■□□□ 1.93
CCDC88AQ3V6T2 PAQR4-205ENST00000576565 842 ntTSL 2 BASIC27.13■■□□□ 1.93
CCDC88AQ3V6T2 ZC3H14-223ENST00000557607 1983 ntTSL 5 BASIC27.13■■□□□ 1.93
CCDC88AQ3V6T2 NIPSNAP2-205ENST00000446778 1882 ntTSL 2 BASIC27.12■■□□□ 1.93
CCDC88AQ3V6T2 PRMT5-213ENST00000553897 1857 ntTSL 2 BASIC27.12■■□□□ 1.93
CCDC88AQ3V6T2 XPA-201ENST00000375128 1417 ntAPPRIS P1 TSL 1 (best) BASIC27.12■■□□□ 1.93
CCDC88AQ3V6T2 ERI3-201ENST00000372257 1684 ntAPPRIS P1 TSL 1 (best) BASIC27.12■■□□□ 1.93
CCDC88AQ3V6T2 LRRC3C-201ENST00000377924 891 ntAPPRIS P1 TSL 3 BASIC27.12■■□□□ 1.93
CCDC88AQ3V6T2 OAS3-207ENST00000551007 998 ntTSL 2 BASIC27.12■■□□□ 1.93
CCDC88AQ3V6T2 AC087239.1-201ENST00000622671 572 ntBASIC27.12■■□□□ 1.93
CCDC88AQ3V6T2 SLC22A31-206ENST00000614943 1860 ntTSL 5 BASIC27.12■■□□□ 1.93
CCDC88AQ3V6T2 C5AR2-202ENST00000600626 1287 ntAPPRIS P1 TSL 1 (best) BASIC27.11■■□□□ 1.93
CCDC88AQ3V6T2 MFSD14C-203ENST00000602917 786 ntAPPRIS P5 TSL 1 (best) BASIC27.11■■□□□ 1.93
CCDC88AQ3V6T2 AL121832.2-201ENST00000610979 668 ntBASIC27.11■■□□□ 1.93
CCDC88AQ3V6T2 ZBTB42-202ENST00000555360 1411 ntAPPRIS P1 TSL 1 (best) BASIC27.11■■□□□ 1.93
CCDC88AQ3V6T2 PMS1-205ENST00000409985 1882 ntTSL 2 BASIC27.11■■□□□ 1.93
CCDC88AQ3V6T2 CBARP-202ENST00000382477 2453 ntAPPRIS ALT2 TSL 5 BASIC27.11■■□□□ 1.93
CCDC88AQ3V6T2 SPTSSA-201ENST00000298130 2777 ntAPPRIS P1 TSL 1 (best) BASIC27.11■■□□□ 1.93
CCDC88AQ3V6T2 GAS2L1-201ENST00000406549 1803 ntTSL 1 (best) BASIC27.11■■□□□ 1.93
CCDC88AQ3V6T2 NAE1-204ENST00000394074 1654 ntTSL 5 BASIC27.11■■□□□ 1.93
CCDC88AQ3V6T2 RAB40B-201ENST00000269347 2189 ntTSL 2 BASIC27.11■■□□□ 1.93
CCDC88AQ3V6T2 GUK1-201ENST00000312726 1084 ntAPPRIS P3 TSL 1 (best) BASIC27.1■■□□□ 1.93
CCDC88AQ3V6T2 TESC-201ENST00000335209 1041 ntAPPRIS P1 TSL 1 (best) BASIC27.1■■□□□ 1.93
CCDC88AQ3V6T2 ZNF717-203ENST00000477374 1169 ntTSL 2 BASIC27.1■■□□□ 1.93
CCDC88AQ3V6T2 FAXDC2-211ENST00000520968 558 ntTSL 4 BASIC27.1■■□□□ 1.93
CCDC88AQ3V6T2 TESC-206ENST00000541210 936 ntTSL 3 BASIC27.1■■□□□ 1.93
CCDC88AQ3V6T2 CAMTA1-216ENST00000557126 486 ntTSL 2 BASIC27.1■■□□□ 1.93
CCDC88AQ3V6T2 SNAP23-214ENST00000567094 834 ntTSL 3 BASIC27.1■■□□□ 1.93
CCDC88AQ3V6T2 TOR2A-201ENST00000336067 1370 ntTSL 2 BASIC27.09■■□□□ 1.93
CCDC88AQ3V6T2 RPIA-201ENST00000283646 1848 ntAPPRIS P1 TSL 1 (best) BASIC27.09■■□□□ 1.93
CCDC88AQ3V6T2 PICALM-224ENST00000630913 2261 ntTSL 5 BASIC27.09■■□□□ 1.93
CCDC88AQ3V6T2 POLR2J-202ENST00000393794 784 ntTSL 1 (best) BASIC27.09■■□□□ 1.93
CCDC88AQ3V6T2 SLC29A4P1-201ENST00000398760 971 ntBASIC27.09■■□□□ 1.93
CCDC88AQ3V6T2 KCTD5-201ENST00000301738 2482 ntAPPRIS P1 TSL 1 (best) BASIC27.09■■□□□ 1.93
CCDC88AQ3V6T2 RARA-204ENST00000394089 2024 ntAPPRIS P1 TSL 2 BASIC27.09■■□□□ 1.93
CCDC88AQ3V6T2 TBC1D10A-201ENST00000215790 2077 ntAPPRIS P3 TSL 1 (best) BASIC27.09■■□□□ 1.93
CCDC88AQ3V6T2 C19orf67-203ENST00000548523 1427 ntAPPRIS P2 TSL 5 BASIC27.09■■□□□ 1.93
CCDC88AQ3V6T2 CBR1-201ENST00000290349 1293 ntAPPRIS P1 TSL 1 (best) BASIC27.08■■□□□ 1.93
CCDC88AQ3V6T2 DLEU2-203ENST00000425586 1267 ntTSL 1 (best) BASIC27.08■■□□□ 1.93
CCDC88AQ3V6T2 CAPNS1-207ENST00000589146 578 ntTSL 3 BASIC27.08■■□□□ 1.93
CCDC88AQ3V6T2 AC008687.6-201ENST00000596318 630 ntBASIC27.08■■□□□ 1.93
CCDC88AQ3V6T2 ACBD4-214ENST00000591859 1998 ntTSL 1 (best) BASIC27.08■■□□□ 1.93
CCDC88AQ3V6T2 AMZ2P1-201ENST00000397713 2259 ntTSL 1 (best) BASIC27.08■■□□□ 1.93
CCDC88AQ3V6T2 XBP1-201ENST00000216037 1850 ntAPPRIS P2 TSL 1 (best) BASIC27.08■■□□□ 1.93
CCDC88AQ3V6T2 AC144652.1-201ENST00000609974 1624 ntBASIC27.07■■□□□ 1.92
CCDC88AQ3V6T2 AC092675.2-201ENST00000413274 541 ntTSL 4 BASIC27.07■■□□□ 1.92
CCDC88AQ3V6T2 AL137779.2-201ENST00000554859 448 ntTSL 2 BASIC27.07■■□□□ 1.92
CCDC88AQ3V6T2 KLK9-202ENST00000594211 754 ntAPPRIS P1 TSL 1 (best) BASIC27.07■■□□□ 1.92
Retrieved 100 of 98,524 protein–RNA pairs in 16.8 ms