Protein–RNA interactions for Protein: P78317

RNF4, E3 ubiquitin-protein ligase RNF4, humanhuman

Predictions only

Length 190 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4P78317 LINC01960-201ENST00000563759 1884 ntBASIC20.28■□□□□ 0.84
RNF4P78317 ACSF2-203ENST00000502667 2098 ntTSL 2 BASIC20.28■□□□□ 0.84
RNF4P78317 RNF4-207ENST00000506706 2098 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
RNF4P78317 USP45-205ENST00000472914 1617 ntTSL 5 BASIC20.28■□□□□ 0.84
RNF4P78317 CNTD2-202ENST00000430325 1817 ntAPPRIS P2 TSL 2 BASIC20.28■□□□□ 0.84
RNF4P78317 IRF2BP1-201ENST00000302165 2564 ntAPPRIS P1 BASIC20.28■□□□□ 0.84
RNF4P78317 PEX10-204ENST00000507596 1941 ntAPPRIS ALT1 TSL 5 BASIC20.28■□□□□ 0.84
RNF4P78317 YIF1B-202ENST00000337679 1257 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
RNF4P78317 INS-202ENST00000381330 597 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
RNF4P78317 SLC26A1-203ENST00000398520 1111 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
RNF4P78317 AC010203.1-202ENST00000550096 695 ntTSL 3 BASIC20.28■□□□□ 0.84
RNF4P78317 AC009506.1-201ENST00000418474 1494 ntTSL 2 BASIC20.28■□□□□ 0.84
RNF4P78317 DACT3-201ENST00000300875 2526 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
RNF4P78317 KDELR1-203ENST00000597017 1594 ntTSL 2 BASIC20.28■□□□□ 0.84
RNF4P78317 KLC3-204ENST00000585434 1764 ntAPPRIS ALT1 TSL 1 (best) BASIC20.28■□□□□ 0.84
RNF4P78317 HOXC8-201ENST00000040584 1889 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
RNF4P78317 EXOG-203ENST00000422077 1317 ntTSL 2 BASIC20.27■□□□□ 0.84
RNF4P78317 ZDHHC16-203ENST00000353979 1647 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
RNF4P78317 WDR86-208ENST00000628331 1905 ntTSL 5 BASIC20.27■□□□□ 0.84
RNF4P78317 OLIG1-201ENST00000382348 2277 ntAPPRIS P1 BASIC20.27■□□□□ 0.84
RNF4P78317 POMZP3-202ENST00000310842 1490 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
RNF4P78317 TRAF4-205ENST00000444415 1456 ntTSL 5 BASIC20.27■□□□□ 0.84
RNF4P78317 GLTPD2-201ENST00000331264 1023 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
RNF4P78317 MOSPD3-203ENST00000393950 1191 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
RNF4P78317 LINC00472-204ENST00000436803 667 ntTSL 5 BASIC20.27■□□□□ 0.84
RNF4P78317 ZFYVE28-207ENST00000509171 1135 ntTSL 2 BASIC20.27■□□□□ 0.84
RNF4P78317 RGS6-209ENST00000553525 2005 ntAPPRIS ALT1 TSL 2 BASIC20.27■□□□□ 0.84
RNF4P78317 EHBP1L1-201ENST00000309295 5185 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
RNF4P78317 GRK4-206ENST00000504933 1971 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
RNF4P78317 CCDC7-201ENST00000277657 1899 ntAPPRIS P2 TSL 1 (best) BASIC20.26■□□□□ 0.83
RNF4P78317 CRTAC1-202ENST00000370591 2348 ntAPPRIS P2 TSL 5 BASIC20.26■□□□□ 0.83
RNF4P78317 PGF-206ENST00000555567 1927 ntAPPRIS P3 TSL 1 (best) BASIC20.26■□□□□ 0.83
RNF4P78317 POLR3GL-201ENST00000369313 818 ntTSL 2 BASIC20.26■□□□□ 0.83
RNF4P78317 LBX2-202ENST00000377566 1186 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
RNF4P78317 MIR572-201ENST00000384983 95 ntBASIC20.26■□□□□ 0.83
RNF4P78317 AC010141.3-201ENST00000456659 717 ntBASIC20.26■□□□□ 0.83
RNF4P78317 TANGO2-201ENST00000327374 2273 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
RNF4P78317 SRPK3-202ENST00000370101 1958 ntAPPRIS P3 TSL 1 (best) BASIC20.26■□□□□ 0.83
RNF4P78317 ARRDC1-AS1-203ENST00000623970 2210 ntTSL 5 BASIC20.26■□□□□ 0.83
RNF4P78317 LINC00454-202ENST00000430978 1327 ntTSL 5 BASIC20.26■□□□□ 0.83
RNF4P78317 PKM-201ENST00000319622 2717 ntAPPRIS P5 TSL 2 BASIC20.26■□□□□ 0.83
RNF4P78317 AC098864.1-205ENST00000315302 2260 ntTSL 2 BASIC20.25■□□□□ 0.83
RNF4P78317 SAMD4B-208ENST00000598913 2877 ntAPPRIS ALT1 TSL 1 (best) BASIC20.25■□□□□ 0.83
RNF4P78317 HOXA4-201ENST00000360046 1747 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
RNF4P78317 PTP4A3-204ENST00000521578 1717 ntAPPRIS P1 TSL 5 BASIC20.25■□□□□ 0.83
RNF4P78317 ZNF517-207ENST00000531720 1615 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
RNF4P78317 HES6-202ENST00000409002 1286 ntAPPRIS ALT2 TSL 1 (best) BASIC20.25■□□□□ 0.83
RNF4P78317 AC061979.1-201ENST00000532061 434 ntTSL 5 BASIC20.25■□□□□ 0.83
RNF4P78317 GSX2-205ENST00000611459 1262 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
RNF4P78317 RARA-203ENST00000394086 2008 ntTSL 2 BASIC20.25■□□□□ 0.83
RNF4P78317 SETD9-211ENST00000628593 1306 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
RNF4P78317 WT1-210ENST00000639563 1494 ntAPPRIS ALT2 TSL 1 (best) BASIC20.24■□□□□ 0.83
RNF4P78317 TMEM64-203ENST00000458549 4997 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
RNF4P78317 SLC35F4-206ENST00000556826 1908 ntAPPRIS P1 TSL 5 BASIC20.24■□□□□ 0.83
RNF4P78317 POLR2J2-202ENST00000358438 2065 ntAPPRIS ALT2 TSL 1 (best) BASIC20.24■□□□□ 0.83
RNF4P78317 C18orf65-201ENST00000622985 2076 ntTSL 2 BASIC20.24■□□□□ 0.83
RNF4P78317 TSPY4-201ENST00000383008 1143 ntAPPRIS ALT2 TSL 5 BASIC20.24■□□□□ 0.83
RNF4P78317 POLR2F-203ENST00000407936 582 ntTSL 3 BASIC20.24■□□□□ 0.83
RNF4P78317 POLR2F-207ENST00000460648 518 ntTSL 4 BASIC20.24■□□□□ 0.83
RNF4P78317 SLC39A3-203ENST00000545664 1219 ntTSL 2 BASIC20.24■□□□□ 0.83
RNF4P78317 XPA-201ENST00000375128 1417 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
RNF4P78317 SCN1B-206ENST00000638536 1600 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
RNF4P78317 GDI1-204ENST00000447750 2474 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
RNF4P78317 B4GAT1-201ENST00000311181 2072 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
RNF4P78317 FPGS-202ENST00000373228 1383 ntTSL 5 BASIC20.23■□□□□ 0.83
RNF4P78317 BBC3-202ENST00000341983 1538 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
RNF4P78317 KCNIP1-201ENST00000328939 2014 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
RNF4P78317 PHF10-202ENST00000366780 1589 ntAPPRIS ALT2 TSL 5 BASIC20.23■□□□□ 0.83
RNF4P78317 ATAD3A-203ENST00000378756 2492 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
RNF4P78317 LHPP-203ENST00000392757 840 ntTSL 3 BASIC20.23■□□□□ 0.83
RNF4P78317 MIR935-201ENST00000401179 91 ntBASIC20.23■□□□□ 0.83
RNF4P78317 OTUB1-212ENST00000543988 1259 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
RNF4P78317 ACBD4-216ENST00000619916 1276 ntTSL 5 BASIC20.23■□□□□ 0.83
RNF4P78317 NPY4R-201ENST00000374312 1956 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
RNF4P78317 NPY4R2-201ENST00000576178 1956 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
RNF4P78317 PDLIM3-203ENST00000284771 1672 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
RNF4P78317 ACTL10-201ENST00000330271 2028 ntAPPRIS P1 BASIC20.22■□□□□ 0.83
RNF4P78317 SSX2IP-203ENST00000437941 5843 ntTSL 2 BASIC20.22■□□□□ 0.83
RNF4P78317 TANGO2-210ENST00000432883 2084 ntTSL 2 BASIC20.22■□□□□ 0.83
RNF4P78317 C9orf163-202ENST00000624034 2573 ntBASIC20.22■□□□□ 0.83
RNF4P78317 ZSCAN18-212ENST00000600404 1934 ntAPPRIS ALT2 TSL 2 BASIC20.22■□□□□ 0.83
RNF4P78317 NABP2-202ENST00000341463 1411 ntAPPRIS P1 TSL 3 BASIC20.22■□□□□ 0.83
RNF4P78317 PHPT1-201ENST00000247665 890 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
RNF4P78317 SLC39A14-202ENST00000289952 2137 ntAPPRIS ALT2 TSL 2 BASIC20.22■□□□□ 0.83
RNF4P78317 PRELID2-201ENST00000334744 2140 ntTSL 2 BASIC20.22■□□□□ 0.83
RNF4P78317 NINJ1-201ENST00000375446 1281 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
RNF4P78317 PRDX4-202ENST00000379341 1005 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
RNF4P78317 RPUSD3-206ENST00000433535 1178 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
RNF4P78317 MED14OS-201ENST00000456333 900 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
RNF4P78317 HERC2P4-206ENST00000568097 1062 ntTSL 5 BASIC20.22■□□□□ 0.83
RNF4P78317 AC010999.2-201ENST00000621974 596 ntTSL 2 BASIC20.22■□□□□ 0.83
RNF4P78317 FRMD8-203ENST00000416776 1818 ntTSL 2 BASIC20.22■□□□□ 0.83
RNF4P78317 COMT-203ENST00000403184 2217 ntTSL 2 BASIC20.22■□□□□ 0.83
RNF4P78317 ADSS-201ENST00000366535 2780 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
RNF4P78317 ASF1B-201ENST00000263382 2059 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
RNF4P78317 ME2-208ENST00000638937 2471 ntTSL 5 BASIC20.21■□□□□ 0.83
RNF4P78317 ASPSCR1-201ENST00000306729 2123 ntAPPRIS ALT2 TSL 2 BASIC20.21■□□□□ 0.83
RNF4P78317 HYAL2-207ENST00000442581 2318 ntAPPRIS P1 TSL 2 BASIC20.21■□□□□ 0.83
RNF4P78317 UNC50-204ENST00000409975 2172 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
RNF4P78317 SLC25A39-201ENST00000225308 1607 ntAPPRIS P3 TSL 1 (best) BASIC20.21■□□□□ 0.83
Retrieved 100 of 98,524 protein–RNA pairs in 51 ms