Protein–RNA interactions for Protein: P58418

CLRN1, Clarin-1, humanhuman

Predictions only

Length 232 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLRN1P58418 NR2F1-AS1-210ENST00000606739 1431 ntTSL 2 BASIC19.55■□□□□ 0.72
CLRN1P58418 AC131212.1-201ENST00000613771 668 ntBASIC19.55■□□□□ 0.72
CLRN1P58418 AP002761.3-201ENST00000546324 1695 ntTSL 2 BASIC19.55■□□□□ 0.72
CLRN1P58418 GTSE1-AS1-202ENST00000623117 1518 ntBASIC19.55■□□□□ 0.72
CLRN1P58418 KLF3-203ENST00000514033 1871 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
CLRN1P58418 KAT5-201ENST00000341318 2296 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
CLRN1P58418 ARL2BP-201ENST00000219204 2130 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
CLRN1P58418 CRHR1-202ENST00000314537 2535 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
CLRN1P58418 AC131281.2-201ENST00000520478 145 ntBASIC19.54■□□□□ 0.72
CLRN1P58418 SENCR-201ENST00000526269 1298 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
CLRN1P58418 HOXA11-AS1_1.1-201ENST00000613939 98 ntBASIC19.54■□□□□ 0.72
CLRN1P58418 SCUBE1-208ENST00000615096 1119 ntTSL 2 BASIC19.54■□□□□ 0.72
CLRN1P58418 TANGO2-210ENST00000432883 2084 ntTSL 2 BASIC19.54■□□□□ 0.72
CLRN1P58418 AC133637.1-201ENST00000624115 1537 ntBASIC19.54■□□□□ 0.72
CLRN1P58418 AC127496.7-201ENST00000625110 1798 ntBASIC19.54■□□□□ 0.72
CLRN1P58418 MYCBPAP-202ENST00000419930 1640 ntAPPRIS ALT2 TSL 1 (best) BASIC19.54■□□□□ 0.72
CLRN1P58418 POLD2-218ENST00000610533 1619 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
CLRN1P58418 HTATSF1-201ENST00000218364 2775 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
CLRN1P58418 DPF1-206ENST00000420980 2227 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
CLRN1P58418 PYCR1-203ENST00000402252 1346 ntTSL 2 BASIC19.53■□□□□ 0.72
CLRN1P58418 PLPP1-201ENST00000264775 1550 ntAPPRIS P4 TSL 1 (best) BASIC19.53■□□□□ 0.72
CLRN1P58418 AC233992.2-201ENST00000531225 1596 ntAPPRIS P1 TSL 2 BASIC19.53■□□□□ 0.72
CLRN1P58418 SLC25A47-202ENST00000557052 1552 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
CLRN1P58418 AL122058.1-201ENST00000412321 1166 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
CLRN1P58418 ARHGDIA-217ENST00000584461 886 ntTSL 2 BASIC19.53■□□□□ 0.72
CLRN1P58418 MIR4466-201ENST00000606121 54 ntBASIC19.53■□□□□ 0.72
CLRN1P58418 CELF5-201ENST00000292672 1854 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
CLRN1P58418 NKX2-4-201ENST00000351817 2238 ntAPPRIS P1 TSL 5 BASIC19.53■□□□□ 0.72
CLRN1P58418 HOXB7-201ENST00000239165 1371 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
CLRN1P58418 HAUS7-202ENST00000370211 1363 ntAPPRIS P2 TSL 1 (best) BASIC19.53■□□□□ 0.72
CLRN1P58418 CDKN1C-202ENST00000414822 2051 ntAPPRIS P3 TSL 1 (best) BASIC19.53■□□□□ 0.72
CLRN1P58418 B3GALT4-204ENST00000451237 1694 ntAPPRIS P1 BASIC19.52■□□□□ 0.72
CLRN1P58418 SLC19A1-209ENST00000485649 1896 ntAPPRIS ALT2 TSL 2 BASIC19.52■□□□□ 0.72
CLRN1P58418 AP004608.1-202ENST00000533390 1863 ntTSL 1 (best) BASIC19.52■□□□□ 0.72
CLRN1P58418 CNNM1-201ENST00000356713 5959 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
CLRN1P58418 AC010336.5-201ENST00000594308 317 ntTSL 3 BASIC19.52■□□□□ 0.72
CLRN1P58418 MESP2-201ENST00000341735 1552 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.71
CLRN1P58418 KLC3-204ENST00000585434 1764 ntAPPRIS ALT1 TSL 1 (best) BASIC19.52■□□□□ 0.71
CLRN1P58418 EGR4-202ENST00000545030 2372 ntAPPRIS P2 TSL 1 (best) BASIC19.51■□□□□ 0.71
CLRN1P58418 DPH1-203ENST00000570477 1747 ntAPPRIS ALT2 TSL 2 BASIC19.51■□□□□ 0.71
CLRN1P58418 AC087742.1-201ENST00000575880 1738 ntBASIC19.51■□□□□ 0.71
CLRN1P58418 TNFRSF6B-201ENST00000369996 1124 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
CLRN1P58418 ACYP2-202ENST00000394666 993 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
CLRN1P58418 IPO9-AS1-201ENST00000413035 839 ntTSL 3 BASIC19.51■□□□□ 0.71
CLRN1P58418 ZNF419-210ENST00000520540 568 ntTSL 4 BASIC19.51■□□□□ 0.71
CLRN1P58418 MIR3181-201ENST00000578512 73 ntBASIC19.51■□□□□ 0.71
CLRN1P58418 Z98883.1-202ENST00000635107 1289 ntTSL 5 BASIC19.51■□□□□ 0.71
CLRN1P58418 SHISA9-205ENST00000639941 1135 ntAPPRIS ALT2 TSL 5 BASIC19.51■□□□□ 0.71
CLRN1P58418 ASRGL1-202ENST00000415229 2270 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
CLRN1P58418 C8orf82-202ENST00000524821 2476 ntAPPRIS P2 TSL 1 (best) BASIC19.51■□□□□ 0.71
CLRN1P58418 LRRC34-201ENST00000446859 1718 ntAPPRIS ALT2 TSL 2 BASIC19.51■□□□□ 0.71
CLRN1P58418 TSSK1B-201ENST00000390666 2478 ntAPPRIS P1 BASIC19.5■□□□□ 0.71
CLRN1P58418 FGFR1-241ENST00000619564 5482 ntTSL 5 BASIC19.5■□□□□ 0.71
CLRN1P58418 SHMT1-203ENST00000354098 1656 ntTSL 1 (best) BASIC19.5■□□□□ 0.71
CLRN1P58418 STK19-202ENST00000375333 1557 ntAPPRIS P3 TSL 1 (best) BASIC19.5■□□□□ 0.71
CLRN1P58418 WDR86-AS1-204ENST00000489632 751 ntTSL 3 BASIC19.5■□□□□ 0.71
CLRN1P58418 DUX4L19-201ENST00000557448 1267 ntBASIC19.5■□□□□ 0.71
CLRN1P58418 AC096887.1-203ENST00000607203 768 ntAPPRIS ALT2 TSL 5 BASIC19.5■□□□□ 0.71
CLRN1P58418 DPH7-201ENST00000277540 1847 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
CLRN1P58418 AC242852.2-201ENST00000615738 1807 ntBASIC19.5■□□□□ 0.71
CLRN1P58418 ADAD2-201ENST00000268624 2283 ntAPPRIS P3 TSL 2 BASIC19.5■□□□□ 0.71
CLRN1P58418 FBRS-202ENST00000356166 5200 ntTSL 5 BASIC19.5■□□□□ 0.71
CLRN1P58418 EPCAM-202ENST00000405271 1530 ntTSL 5 BASIC19.5■□□□□ 0.71
CLRN1P58418 ITM2C-202ENST00000326427 2078 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
CLRN1P58418 NRL-203ENST00000397002 1976 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
CLRN1P58418 ATP11C-203ENST00000370557 6924 ntAPPRIS ALT2 TSL 5 BASIC19.5■□□□□ 0.71
CLRN1P58418 PNMA6A-201ENST00000421798 2209 ntAPPRIS P1 TSL 2 BASIC19.49■□□□□ 0.71
CLRN1P58418 SYT6-210ENST00000641643 1587 ntBASIC19.49■□□□□ 0.71
CLRN1P58418 DISC1-223ENST00000628350 2363 ntAPPRIS ALT2 TSL 1 (best) BASIC19.49■□□□□ 0.71
CLRN1P58418 AC079834.2-201ENST00000609776 1949 ntBASIC19.49■□□□□ 0.71
CLRN1P58418 IRF3-207ENST00000593922 1494 ntTSL 1 (best) BASIC19.49■□□□□ 0.71
CLRN1P58418 CASP9-203ENST00000375890 1351 ntTSL 2 BASIC19.49■□□□□ 0.71
CLRN1P58418 CLTB-201ENST00000310418 1215 ntAPPRIS P4 TSL 1 (best) BASIC19.49■□□□□ 0.71
CLRN1P58418 C2orf82-201ENST00000331342 465 ntAPPRIS P2 TSL 1 (best) BASIC19.49■□□□□ 0.71
CLRN1P58418 CLTB-202ENST00000345807 1161 ntAPPRIS ALT1 TSL 1 (best) BASIC19.49■□□□□ 0.71
CLRN1P58418 CARD19-201ENST00000375464 855 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
CLRN1P58418 MAST4-206ENST00000406374 1066 ntTSL 1 (best) BASIC19.49■□□□□ 0.71
CLRN1P58418 AL445237.1-202ENST00000604581 425 ntTSL 5 BASIC19.49■□□□□ 0.71
CLRN1P58418 AC091982.4-201ENST00000623943 726 ntTSL 2 BASIC19.49■□□□□ 0.71
CLRN1P58418 HOXC8-201ENST00000040584 1889 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
CLRN1P58418 SHMT1-201ENST00000316694 2464 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
CLRN1P58418 GADD45GIP1-201ENST00000316939 1782 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
CLRN1P58418 AC090377.1-201ENST00000585691 1762 ntTSL 3 BASIC19.49■□□□□ 0.71
CLRN1P58418 PLPP5-209ENST00000529359 2185 ntTSL 1 (best) BASIC19.49■□□□□ 0.71
CLRN1P58418 TOX2-201ENST00000341197 1880 ntAPPRIS P1 TSL 2 BASIC19.48■□□□□ 0.71
CLRN1P58418 GAL3ST1-202ENST00000401975 1791 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
CLRN1P58418 POU2F2-215ENST00000560398 1788 ntTSL 5 BASIC19.48■□□□□ 0.71
CLRN1P58418 AL136116.3-201ENST00000402907 1138 ntBASIC19.48■□□□□ 0.71
CLRN1P58418 MYD88-205ENST00000424893 1279 ntAPPRIS ALT2 TSL 1 (best) BASIC19.48■□□□□ 0.71
CLRN1P58418 PTCHD3P2-201ENST00000424937 1205 ntBASIC19.48■□□□□ 0.71
CLRN1P58418 TMEM165-204ENST00000506198 828 ntTSL 2 BASIC19.48■□□□□ 0.71
CLRN1P58418 CTDP1-208ENST00000613122 5866 ntAPPRIS P3 TSL 1 (best) BASIC19.48■□□□□ 0.71
CLRN1P58418 IGFBP1-201ENST00000275525 1653 ntAPPRIS P2 TSL 1 (best) BASIC19.48■□□□□ 0.71
CLRN1P58418 PLEKHO1-201ENST00000369124 2050 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
CLRN1P58418 ECEL1P1-201ENST00000373592 1742 ntBASIC19.48■□□□□ 0.71
CLRN1P58418 MAST2-201ENST00000361297 5738 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
CLRN1P58418 PDS5A-202ENST00000503396 2685 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
CLRN1P58418 CERS4-205ENST00000558331 1803 ntTSL 5 BASIC19.47■□□□□ 0.71
CLRN1P58418 TPM4-201ENST00000300933 2666 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
CLRN1P58418 UBE2J2-203ENST00000360466 1047 ntAPPRIS P1 TSL 2 BASIC19.47■□□□□ 0.71
Retrieved 100 of 98,524 protein–RNA pairs in 81 ms