Protein–RNA interactions for Protein: P48412

UPF3, Nonsense-mediated mRNA decay protein 3, yeastyeast

Known RBP Predictions only

Length 387 aa.

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Protein RNA Prediction (catRAPID) Interaction (RIP-Chip)
Gene UniProt Accession Gene Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score Detected Interaction
UPF3P48412 CBF5YLR175W 1452 nt4.36□□□□□ -1.71
UPF3P48412 RAD54YGL163C 2697 nt4.35□□□□□ -1.71
UPF3P48412 CPR4YCR069W 957 nt4.35□□□□□ -1.71
UPF3P48412 RPC11YDR045C 333 nt4.35□□□□□ -1.71
UPF3P48412 BCP1YDR361C 852 nt4.35□□□□□ -1.71
UPF3P48412 ELF1YKL160W 438 nt4.35□□□□□ -1.71
UPF3P48412 POP8YBL018C 402 nt4.35□□□□□ -1.71
UPF3P48412 YMR105W-AYMR105W-A 195 nt4.35□□□□□ -1.71
UPF3P48412 URE2YNL229C 1065 nt4.35□□□□□ -1.71
UPF3P48412 RPS9BYBR189W 588 nt4.35□□□□□ -1.71
UPF3P48412 SER3YER081W 1410 nt4.35□□□□□ -1.71
UPF3P48412 IMH1YLR309C 2736 nt4.34□□□□□ -1.71
UPF3P48412 RNA15YGL044C 891 nt4.34□□□□□ -1.71
UPF3P48412 PPE1YHR075C 1203 nt4.34□□□□□ -1.71
UPF3P48412 BMT5YIL096C 1011 nt4.34□□□□□ -1.71
UPF3P48412 COA3YJL062W-A 258 nt4.34□□□□□ -1.71
UPF3P48412 PAM18YLR008C 507 nt4.34□□□□□ -1.71
UPF3P48412 YLR311CYLR311C 348 nt4.34□□□□□ -1.71
UPF3P48412 FBP1YLR377C 1047 nt4.34□□□□□ -1.71
UPF3P48412 PCL1YNL289W 840 nt4.34□□□□□ -1.71
UPF3P48412 RPN8YOR261C 1017 nt4.34□□□□□ -1.71
UPF3P48412 UBS1YBR165W 834 nt4.34□□□□□ -1.71
UPF3P48412 YBR238CYBR238C 2196 nt4.34□□□□□ -1.72
UPF3P48412 YOL075CYOL075C 3885 nt4.34□□□□□ -1.72
UPF3P48412 MEK1YOR351C 1494 nt4.33□□□□□ -1.72
UPF3P48412 snR7-SsnR7-S 179 nt4.33□□□□□ -1.72
UPF3P48412 MTR2YKL186C 555 nt4.33□□□□□ -1.72
UPF3P48412 MCM1YMR043W 861 nt4.33□□□□□ -1.72
UPF3P48412 YMR085WYMR085W 1299 nt4.33□□□□□ -1.72
UPF3P48412 YNR071CYNR071C 1029 nt4.33□□□□□ -1.72
UPF3P48412 VPS69YPR087W 321 nt4.33□□□□□ -1.72
UPF3P48412 YCL022CYCL022C 516 nt4.33□□□□□ -1.72
UPF3P48412 MET4YNL103W 2019 nt4.33□□□□□ -1.72
UPF3P48412 GAD1YMR250W 1758 nt4.32□□□□□ -1.72
UPF3P48412 FDC1YDR539W 1512 nt4.32□□□□□ -1.72
UPF3P48412 TEL1YBL088C 8364 nt4.32□□□□□ -1.72
UPF3P48412 PER1YCR044C 1074 nt4.32□□□□□ -1.72
UPF3P48412 YEL053W-AYEL053W-A 348 nt4.32□□□□□ -1.72
UPF3P48412 YHI9YHR029C 885 nt4.32□□□□□ -1.72
UPF3P48412 YJR056CYJR056C 711 nt4.32□□□□□ -1.72
UPF3P48412 TIF5YPR041W 1218 nt4.32□□□□□ -1.72
UPF3P48412 MCM16YPR046W 546 nt4.32□□□□□ -1.72
UPF3P48412 ALG6YOR002W 1635 nt4.32□□□□□ -1.72
UPF3P48412 IMD2YHR216W 1572 nt4.31□□□□□ -1.72
UPF3P48412 SNF2YOR290C 5112 nt4.31□□□□□ -1.72
UPF3P48412 AEP3YPL005W 1821 nt4.31□□□□□ -1.72
UPF3P48412 DIP2YLR129W 2832 nt4.31□□□□□ -1.72
UPF3P48412 RPP1AYDL081C 321 nt4.31□□□□□ -1.72
UPF3P48412 RSM25YIL093C 795 nt4.31□□□□□ -1.72
UPF3P48412 HPA2YPR193C 471 nt4.31□□□□□ -1.72
UPF3P48412 VPS45YGL095C 1734 nt4.31□□□□□ -1.72
UPF3P48412 UTP25YIL091C 2166 nt4.31□□□□□ -1.72
UPF3P48412 MAG2YLR427W 2013 nt4.31□□□□□ -1.72
UPF3P48412 GEM1YAL048C 1989 nt4.31□□□□□ -1.72
UPF3P48412 BUD5YCR038C 1929 nt4.31□□□□□ -1.72
UPF3P48412 TPD3YAL016W 1908 nt4.31□□□□□ -1.72
UPF3P48412 PRP3YDR473C 1410 nt4.3□□□□□ -1.72
UPF3P48412 NUP85YJR042W 2235 nt4.3□□□□□ -1.72
UPF3P48412 DHR2YKL078W 2208 nt4.3□□□□□ -1.72
UPF3P48412 OAF3YKR064W 2592 nt4.3□□□□□ -1.72
UPF3P48412 TRM12YML005W 1389 nt4.3□□□□□ -1.72
UPF3P48412 GCD1YOR260W 1737 nt4.3□□□□□ -1.72
UPF3P48412 YIL021C-AYIL021C-A 270 nt4.3□□□□□ -1.72
UPF3P48412 FOL3YMR113W 1284 nt4.3□□□□□ -1.72
UPF3P48412 RPS10BYMR230W 318 nt4.3□□□□□ -1.72
UPF3P48412 YOR186WYOR186W 435 nt4.3□□□□□ -1.72
UPF3P48412 NHX1YDR456W 1902 nt4.3□□□□□ -1.72
UPF3P48412 PTM1YKL039W 1572 nt4.3□□□□□ -1.72
UPF3P48412 OLE1YGL055W 1533 nt4.3□□□□□ -1.72
UPF3P48412 NOP58YOR310C 1536 nt4.3□□□□□ -1.72
UPF3P48412 RSC3YDR303C 2658 nt4.29□□□□□ -1.72
UPF3P48412 CEX1YOR112W 2286 nt4.29□□□□□ -1.72
UPF3P48412 BSC2YDR275W 708 nt4.29□□□□□ -1.72
UPF3P48412 RNH202YDR279W 1053 nt4.29□□□□□ -1.72
UPF3P48412 tS(AGA)D3tS(AGA)D3 83 nt4.29□□□□□ -1.72
UPF3P48412 PAN5YHR063C 1140 nt4.29□□□□□ -1.72
UPF3P48412 SIC1YLR079W 855 nt4.29□□□□□ -1.72
UPF3P48412 YLR428CYLR428C 345 nt4.29□□□□□ -1.72
UPF3P48412 EAF7YNL136W 1278 nt4.29□□□□□ -1.72
UPF3P48412 YBL096CYBL096C 309 nt4.29□□□□□ -1.72
UPF3P48412 USV1YPL230W 1176 nt4.29□□□□□ -1.72
UPF3P48412 REI1YBR267W 1182 nt4.29□□□□□ -1.72
UPF3P48412 POF1YCL047C 777 nt4.29□□□□□ -1.72
UPF3P48412 DBP5YOR046C 1449 nt4.29□□□□□ -1.72
UPF3P48412 RRN11YML043C 1524 nt4.28□□□□□ -1.72
UPF3P48412 YCR024C-BYCR024C-B 267 nt4.28□□□□□ -1.72
UPF3P48412 HAT2YEL056W 1206 nt4.28□□□□□ -1.72
UPF3P48412 YIL102C-AYIL102C-A 228 nt4.28□□□□□ -1.72
UPF3P48412 CCS1YMR038C 750 nt4.28□□□□□ -1.72
UPF3P48412 IZH4YOL101C 939 nt4.28□□□□□ -1.72
UPF3P48412 TMC1YOR052C 453 nt4.28□□□□□ -1.72
UPF3P48412 BAG7YOR134W 1230 nt4.28□□□□□ -1.72
UPF3P48412 LDH1YBR204C 1128 nt4.28□□□□□ -1.72
UPF3P48412 SKG6YHR149C 2205 nt4.27□□□□□ -1.73
UPF3P48412 YMR221CYMR221C 1515 nt4.27□□□□□ -1.73
UPF3P48412 YGR026WYGR026W 837 nt4.27□□□□□ -1.73
UPF3P48412 PCL7YIL050W 858 nt4.27□□□□□ -1.73
UPF3P48412 YML053CYML053C 639 nt4.27□□□□□ -1.73
UPF3P48412 MRPS8YMR158W 468 nt4.27□□□□□ -1.73
UPF3P48412 ATG16YMR159C 453 nt4.27□□□□□ -1.73
Retrieved 100 of 7,029 protein–RNA pairs in 15.7 ms