Protein–RNA interactions for Protein: P28068

HLA-DMB, HLA class II histocompatibility antigen, DM beta chain, humanhuman

Predictions only

Length 263 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DMBP28068 CBLN3-201ENST00000267406 2346 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
HLA-DMBP28068 PKD1P6-201ENST00000343738 4769 ntBASIC16.65■□□□□ 0.26
HLA-DMBP28068 PKIB-204ENST00000368448 1561 ntAPPRIS P1 TSL 5 BASIC16.65■□□□□ 0.26
HLA-DMBP28068 MPST-202ENST00000397225 2116 ntAPPRIS P1 TSL 2 BASIC16.65■□□□□ 0.26
HLA-DMBP28068 MOSPD3-204ENST00000424091 1115 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
HLA-DMBP28068 AC103702.2-201ENST00000433510 1270 ntTSL 2 BASIC16.65■□□□□ 0.26
HLA-DMBP28068 ERRFI1-203ENST00000469499 995 ntTSL 3 BASIC16.65■□□□□ 0.26
HLA-DMBP28068 MTDHP2-201ENST00000601468 714 ntBASIC16.65■□□□□ 0.26
HLA-DMBP28068 TUBBP5-204ENST00000635438 565 ntTSL 4 BASIC16.65■□□□□ 0.26
HLA-DMBP28068 TCEA1-214ENST00000640382 1234 ntTSL 5 BASIC16.65■□□□□ 0.26
HLA-DMBP28068 LRRC61-205ENST00000493307 1456 ntAPPRIS P1 TSL 5 BASIC16.65■□□□□ 0.26
HLA-DMBP28068 CCSAP-201ENST00000284617 5121 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
HLA-DMBP28068 AKT1S1-206ENST00000391834 1849 ntAPPRIS P1 TSL 5 BASIC16.65■□□□□ 0.26
HLA-DMBP28068 C11orf96-202ENST00000528572 1834 ntBASIC16.65■□□□□ 0.26
HLA-DMBP28068 TRIM3-201ENST00000345851 2879 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
HLA-DMBP28068 RAPH1-210ENST00000453034 2394 ntAPPRIS ALT2 TSL 1 (best) BASIC16.65■□□□□ 0.26
HLA-DMBP28068 CTU2-201ENST00000312060 1672 ntAPPRIS P3 TSL 5 BASIC16.65■□□□□ 0.26
HLA-DMBP28068 UBL7-202ENST00000395081 1427 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
HLA-DMBP28068 NRXN2-205ENST00000409571 6381 ntAPPRIS ALT2 TSL 5 BASIC16.64■□□□□ 0.25
HLA-DMBP28068 AC009102.2-201ENST00000606772 1639 ntBASIC16.64■□□□□ 0.25
HLA-DMBP28068 GPR137B-202ENST00000366592 2042 ntAPPRIS P2 TSL 1 (best) BASIC16.64■□□□□ 0.25
HLA-DMBP28068 ARPP19-201ENST00000249822 5301 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
HLA-DMBP28068 DRAP1-201ENST00000312515 989 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
HLA-DMBP28068 CD72-202ENST00000378430 585 ntTSL 3 BASIC16.64■□□□□ 0.25
HLA-DMBP28068 RMI2-201ENST00000312499 1457 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
HLA-DMBP28068 CBWD2-203ENST00000416503 1665 ntAPPRIS ALT2 TSL 1 (best) BASIC16.64■□□□□ 0.25
HLA-DMBP28068 DTNB-207ENST00000405222 2273 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
HLA-DMBP28068 MMEL1-206ENST00000502556 1943 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
HLA-DMBP28068 AC137767.1-201ENST00000602918 1920 ntBASIC16.64■□□□□ 0.25
HLA-DMBP28068 PSPH-202ENST00000395471 2178 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
HLA-DMBP28068 SPSB3-208ENST00000566339 1784 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
HLA-DMBP28068 EFS-203ENST00000429593 2610 ntTSL 2 BASIC16.64■□□□□ 0.25
HLA-DMBP28068 FP325331.1-202ENST00000623531 1380 ntBASIC16.64■□□□□ 0.25
HLA-DMBP28068 POLR2J3-220ENST00000613744 2096 ntAPPRIS ALT2 TSL 1 (best) BASIC16.63■□□□□ 0.25
HLA-DMBP28068 ANKHD1-205ENST00000394723 2135 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
HLA-DMBP28068 ZNF584-203ENST00000593920 2187 ntTSL 2 BASIC16.63■□□□□ 0.25
HLA-DMBP28068 AP001267.3-203ENST00000554407 579 ntTSL 2 BASIC16.63■□□□□ 0.25
HLA-DMBP28068 SLC12A5-AS1-202ENST00000535913 1957 ntTSL 2 BASIC16.63■□□□□ 0.25
HLA-DMBP28068 TMEM44-211ENST00000473092 1508 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
HLA-DMBP28068 AL353743.1-201ENST00000637846 1769 ntTSL 5 BASIC16.63■□□□□ 0.25
HLA-DMBP28068 CERS5-201ENST00000317551 2051 ntAPPRIS P3 TSL 2 BASIC16.63■□□□□ 0.25
HLA-DMBP28068 PLPP2-202ENST00000327790 1397 ntTSL 5 BASIC16.63■□□□□ 0.25
HLA-DMBP28068 NRXN2-203ENST00000377551 6373 ntAPPRIS P3 TSL 1 (best) BASIC16.63■□□□□ 0.25
HLA-DMBP28068 LETM1-201ENST00000302787 5462 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
HLA-DMBP28068 SIMC1-204ENST00000430704 1925 ntAPPRIS P3 TSL 2 BASIC16.62■□□□□ 0.25
HLA-DMBP28068 C1QTNF4-201ENST00000302514 1664 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
HLA-DMBP28068 SLC35F5-203ENST00000409342 2284 ntTSL 2 BASIC16.62■□□□□ 0.25
HLA-DMBP28068 GDF6-202ENST00000620978 973 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
HLA-DMBP28068 PYCR1-203ENST00000402252 1346 ntTSL 2 BASIC16.62■□□□□ 0.25
HLA-DMBP28068 RNASEH2B-201ENST00000336617 1629 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
HLA-DMBP28068 SLC35A2-210ENST00000616181 1614 ntTSL 2 BASIC16.62■□□□□ 0.25
HLA-DMBP28068 FBXW4P1-201ENST00000426721 2239 ntBASIC16.62■□□□□ 0.25
HLA-DMBP28068 PLEKHO1-201ENST00000369124 2050 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
HLA-DMBP28068 FMR1-201ENST00000218200 4333 ntAPPRIS ALT2 TSL 1 (best) BASIC16.61■□□□□ 0.25
HLA-DMBP28068 LINC01960-201ENST00000563759 1884 ntBASIC16.61■□□□□ 0.25
HLA-DMBP28068 NTN1-201ENST00000173229 5954 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
HLA-DMBP28068 CRHR1-201ENST00000293493 2621 ntTSL 5 BASIC16.61■□□□□ 0.25
HLA-DMBP28068 SH3RF3-AS1-201ENST00000567491 1604 ntBASIC16.61■□□□□ 0.25
HLA-DMBP28068 AC004687.1-201ENST00000579003 1625 ntBASIC16.61■□□□□ 0.25
HLA-DMBP28068 AC073111.5-204ENST00000498682 1167 ntAPPRIS P1 TSL 2 BASIC16.61■□□□□ 0.25
HLA-DMBP28068 AP002893.1-201ENST00000528885 684 ntTSL 2 BASIC16.61■□□□□ 0.25
HLA-DMBP28068 DUX4L4-201ENST00000566884 1269 ntBASIC16.61■□□□□ 0.25
HLA-DMBP28068 RBM38-203ENST00000356208 2382 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
HLA-DMBP28068 SDK1-201ENST00000389531 7606 ntAPPRIS ALT2 TSL 5 BASIC16.61■□□□□ 0.25
HLA-DMBP28068 NAE1-204ENST00000394074 1654 ntTSL 5 BASIC16.61■□□□□ 0.25
HLA-DMBP28068 CADPS-202ENST00000357948 5190 ntAPPRIS ALT2 TSL 1 (best) BASIC16.61■□□□□ 0.25
HLA-DMBP28068 BAALC-205ENST00000438105 2662 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
HLA-DMBP28068 DENND2D-202ENST00000369752 1894 ntAPPRIS ALT2 TSL 2 BASIC16.61■□□□□ 0.25
HLA-DMBP28068 FAM102B-201ENST00000370035 5600 ntAPPRIS P2 TSL 1 (best) BASIC16.61■□□□□ 0.25
HLA-DMBP28068 ZDHHC20-203ENST00000400590 1869 ntAPPRIS ALT2 TSL 5 BASIC16.61■□□□□ 0.25
HLA-DMBP28068 PFKFB4-202ENST00000383734 1491 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
HLA-DMBP28068 DCTD-201ENST00000357067 1931 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
HLA-DMBP28068 CCM2-206ENST00000474617 1532 ntTSL 5 BASIC16.6■□□□□ 0.25
HLA-DMBP28068 RNPEP-201ENST00000295640 2427 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
HLA-DMBP28068 GPR27-201ENST00000304411 2447 ntAPPRIS P1 BASIC16.6■□□□□ 0.25
HLA-DMBP28068 LRRC34-201ENST00000446859 1718 ntAPPRIS ALT2 TSL 2 BASIC16.6■□□□□ 0.25
HLA-DMBP28068 CBWD5-207ENST00000382405 1791 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
HLA-DMBP28068 AC092343.1-201ENST00000500224 729 ntTSL 3 BASIC16.6■□□□□ 0.25
HLA-DMBP28068 NAA30-202ENST00000554703 795 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
HLA-DMBP28068 AC010997.5-201ENST00000609182 354 ntBASIC16.6■□□□□ 0.25
HLA-DMBP28068 AC009086.3-201ENST00000623486 1008 ntBASIC16.6■□□□□ 0.25
HLA-DMBP28068 GRK3-203ENST00000619906 2873 ntTSL 5 BASIC16.6■□□□□ 0.25
HLA-DMBP28068 NPY4R-201ENST00000374312 1956 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
HLA-DMBP28068 NPY4R2-201ENST00000576178 1956 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
HLA-DMBP28068 COMT-206ENST00000407537 1457 ntAPPRIS P3 TSL 5 BASIC16.6■□□□□ 0.25
HLA-DMBP28068 AC133065.2-201ENST00000573379 2147 ntTSL 2 BASIC16.6■□□□□ 0.25
HLA-DMBP28068 PPAN-201ENST00000253107 1657 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
HLA-DMBP28068 PPP1R12B-202ENST00000356764 1687 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
HLA-DMBP28068 RALGPS1-207ENST00000394022 1672 ntTSL 2 BASIC16.59■□□□□ 0.25
HLA-DMBP28068 BTBD17-201ENST00000375366 1805 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
HLA-DMBP28068 PHF2-201ENST00000359246 5569 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
HLA-DMBP28068 MYCN-201ENST00000281043 2602 ntAPPRIS P1 TSL 5 BASIC16.59■□□□□ 0.25
HLA-DMBP28068 FAHD1-201ENST00000382666 1964 ntTSL 2 BASIC16.59■□□□□ 0.25
HLA-DMBP28068 POTED-202ENST00000620442 1988 ntAPPRIS ALT2 TSL 1 (best) BASIC16.59■□□□□ 0.25
HLA-DMBP28068 ZSWIM7-201ENST00000399277 2008 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
HLA-DMBP28068 PCMTD2-202ENST00000299468 1049 ntTSL 5 BASIC16.59■□□□□ 0.25
HLA-DMBP28068 TRIM7-202ENST00000334421 1228 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
HLA-DMBP28068 NKIRAS2-209ENST00000479407 992 ntTSL 3 BASIC16.59■□□□□ 0.25
HLA-DMBP28068 CCER2-201ENST00000571838 1057 ntAPPRIS P2 TSL 5 BASIC16.59■□□□□ 0.25
HLA-DMBP28068 ARID1B-220ENST00000636930 8246 ntAPPRIS ALT2 TSL 2 BASIC16.59■□□□□ 0.25
Retrieved 100 of 98,524 protein–RNA pairs in 19.5 ms