Protein–RNA interactions for Protein: P22415

USF1, Upstream stimulatory factor 1, humanhuman

Predicted RBP Predictions only

Length 310 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USF1P22415 XBP1-201ENST00000216037 1850 ntAPPRIS P2 TSL 1 (best) BASIC18.51■□□□□ 0.55
USF1P22415 AC109460.3-201ENST00000569969 5296 ntTSL 2 BASIC18.51■□□□□ 0.55
USF1P22415 P3H3-201ENST00000290510 2632 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
USF1P22415 GJD4-201ENST00000321660 1580 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
USF1P22415 SDC3-202ENST00000339394 1580 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
USF1P22415 PKIB-204ENST00000368448 1561 ntAPPRIS P1 TSL 5 BASIC18.51■□□□□ 0.55
USF1P22415 IRF3-228ENST00000601291 1556 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
USF1P22415 C1QTNF4-201ENST00000302514 1664 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
USF1P22415 AC012645.1-201ENST00000515455 1650 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
USF1P22415 UBALD1-208ENST00000591401 1305 ntTSL 5 BASIC18.5■□□□□ 0.55
USF1P22415 SOX10-201ENST00000360880 2861 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
USF1P22415 SOX10-202ENST00000396884 2879 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
USF1P22415 CCDC96-201ENST00000310085 2091 ntAPPRIS P1 BASIC18.5■□□□□ 0.55
USF1P22415 AC144652.1-201ENST00000609974 1624 ntBASIC18.5■□□□□ 0.55
USF1P22415 ESYT2-201ENST00000251527 5960 ntAPPRIS P2 TSL 1 (best) BASIC18.5■□□□□ 0.55
USF1P22415 PYCARD-201ENST00000247470 990 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
USF1P22415 YIF1B-202ENST00000337679 1257 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
USF1P22415 AIDA-202ENST00000355727 1072 ntTSL 5 BASIC18.5■□□□□ 0.55
USF1P22415 PPA1-202ENST00000373232 1295 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
USF1P22415 SLC26A1-203ENST00000398520 1111 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
USF1P22415 ATP6V0E2-204ENST00000464662 513 ntAPPRIS P1 TSL 2 BASIC18.5■□□□□ 0.55
USF1P22415 LGI4-206ENST00000591633 1113 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
USF1P22415 POLR2E-214ENST00000619917 932 ntTSL 5 BASIC18.5■□□□□ 0.55
USF1P22415 SLC35A3-213ENST00000638988 1286 ntTSL 5 BASIC18.5■□□□□ 0.55
USF1P22415 TLX1-203ENST00000467928 1838 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
USF1P22415 RUNDC3A-202ENST00000426726 2048 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
USF1P22415 NDUFAF1-201ENST00000260361 1461 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
USF1P22415 SAMD8-202ENST00000372690 1654 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
USF1P22415 HMGA2-205ENST00000425208 1444 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
USF1P22415 LIMD2-205ENST00000578402 1534 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
USF1P22415 NKIRAS2-204ENST00000393880 1644 ntAPPRIS P1 TSL 2 BASIC18.49■□□□□ 0.55
USF1P22415 AC133561.1-201ENST00000568600 2415 ntBASIC18.49■□□□□ 0.55
USF1P22415 RNF208-201ENST00000391553 1077 ntAPPRIS P1 BASIC18.49■□□□□ 0.55
USF1P22415 RNF208-202ENST00000392827 1135 ntAPPRIS P1 TSL 5 BASIC18.49■□□□□ 0.55
USF1P22415 NT5C3AP1-201ENST00000394500 1012 ntBASIC18.49■□□□□ 0.55
USF1P22415 PRMT2-204ENST00000397628 954 ntTSL 2 BASIC18.49■□□□□ 0.55
USF1P22415 TERF1P2-201ENST00000583350 1212 ntBASIC18.49■□□□□ 0.55
USF1P22415 AC004528.2-201ENST00000610701 440 ntTSL 5 BASIC18.49■□□□□ 0.55
USF1P22415 AC105233.4-201ENST00000642045 216 ntBASIC18.49■□□□□ 0.55
USF1P22415 MRPL37-202ENST00000360840 1483 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
USF1P22415 SRXN1-201ENST00000381962 2698 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
USF1P22415 ROR1-202ENST00000371080 2305 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
USF1P22415 NMI-201ENST00000243346 1623 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
USF1P22415 SLC35A2-210ENST00000616181 1614 ntTSL 2 BASIC18.49■□□□□ 0.55
USF1P22415 CCZ1B-201ENST00000316731 2885 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
USF1P22415 BIN1-207ENST00000357970 2497 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
USF1P22415 KCNT1-201ENST00000263604 5245 ntAPPRIS ALT2 TSL 5 BASIC18.48■□□□□ 0.55
USF1P22415 STK19-201ENST00000375331 1663 ntAPPRIS ALT2 TSL 1 (best) BASIC18.48■□□□□ 0.55
USF1P22415 NAGLU-201ENST00000225927 2544 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
USF1P22415 THRA-201ENST00000264637 2538 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
USF1P22415 AL391650.1-201ENST00000448923 1468 ntAPPRIS P1 TSL 2 BASIC18.48■□□□□ 0.55
USF1P22415 IRF3-207ENST00000593922 1494 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
USF1P22415 BOP1-205ENST00000569669 2303 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
USF1P22415 CCDC154-201ENST00000389176 2212 ntAPPRIS P5 TSL 5 BASIC18.48■□□□□ 0.55
USF1P22415 GZMM-201ENST00000264553 940 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
USF1P22415 MIR31HG-201ENST00000304425 745 ntTSL 2 BASIC18.48■□□□□ 0.55
USF1P22415 AC104986.2-201ENST00000521696 380 ntTSL 2 BASIC18.48■□□□□ 0.55
USF1P22415 CIRBP-222ENST00000589235 1073 ntAPPRIS ALT1 TSL 2 BASIC18.48■□□□□ 0.55
USF1P22415 AP2S1-203ENST00000593442 636 ntTSL 2 BASIC18.48■□□□□ 0.55
USF1P22415 SCN1B-206ENST00000638536 1600 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
USF1P22415 GET4-201ENST00000265857 2090 ntAPPRIS P2 TSL 1 (best) BASIC18.48■□□□□ 0.55
USF1P22415 SNX10-207ENST00000446848 2613 ntAPPRIS P2 TSL 1 (best) BASIC18.48■□□□□ 0.55
USF1P22415 GALK1-201ENST00000225614 1445 ntAPPRIS P1 TSL 2 BASIC18.48■□□□□ 0.55
USF1P22415 NKX2-3-202ENST00000622383 1986 ntTSL 5 BASIC18.48■□□□□ 0.55
USF1P22415 DPF1-206ENST00000420980 2227 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
USF1P22415 LINC01578-209ENST00000557682 2683 ntTSL 2 BASIC18.47■□□□□ 0.55
USF1P22415 ZBED3-201ENST00000255198 6172 ntAPPRIS P2 TSL 1 (best) BASIC18.47■□□□□ 0.55
USF1P22415 FAM102B-202ENST00000405454 1585 ntAPPRIS ALT2 TSL 5 BASIC18.47■□□□□ 0.55
USF1P22415 ARIH2OS-201ENST00000408959 1598 ntAPPRIS P1 BASIC18.47■□□□□ 0.55
USF1P22415 KDELR1-203ENST00000597017 1594 ntTSL 2 BASIC18.47■□□□□ 0.55
USF1P22415 TARSL2-207ENST00000615656 2356 ntAPPRIS ALT2 TSL 5 BASIC18.47■□□□□ 0.55
USF1P22415 SIRT7-201ENST00000328666 1743 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
USF1P22415 EI24-213ENST00000618552 1747 ntTSL 5 BASIC18.47■□□□□ 0.55
USF1P22415 TPSG1-201ENST00000234798 1108 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
USF1P22415 C5orf38-201ENST00000334000 890 ntAPPRIS P3 TSL 1 (best) BASIC18.47■□□□□ 0.55
USF1P22415 DLX3-202ENST00000512495 834 ntTSL 2 BASIC18.47■□□□□ 0.55
USF1P22415 ASRGL1-210ENST00000534571 639 ntTSL 2 BASIC18.47■□□□□ 0.55
USF1P22415 KISS1R-201ENST00000234371 1625 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
USF1P22415 B3GAT3-201ENST00000265471 1641 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
USF1P22415 RNASEH2B-201ENST00000336617 1629 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
USF1P22415 ACBD4-214ENST00000591859 1998 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
USF1P22415 SCAMP3-202ENST00000355379 1537 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
USF1P22415 PON2-218ENST00000633531 1653 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
USF1P22415 BRD3-202ENST00000371834 2529 ntAPPRIS ALT2 TSL 1 (best) BASIC18.47■□□□□ 0.55
USF1P22415 GLI4-201ENST00000340042 1341 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
USF1P22415 SETD9-211ENST00000628593 1306 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
USF1P22415 MTX2-201ENST00000249442 1364 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
USF1P22415 SLC25A5-AS1-202ENST00000445759 1616 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
USF1P22415 CLEC14A-201ENST00000342213 2267 ntAPPRIS P1 BASIC18.46■□□□□ 0.55
USF1P22415 TTLL11-202ENST00000373776 2012 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
USF1P22415 PRKCZ-AS1-201ENST00000333854 1253 ntTSL 2 BASIC18.46■□□□□ 0.55
USF1P22415 RASGRP2-203ENST00000377486 667 ntTSL 3 BASIC18.46■□□□□ 0.55
USF1P22415 IL15RA-201ENST00000379971 588 ntTSL 3 BASIC18.46■□□□□ 0.55
USF1P22415 ASMT-202ENST00000381233 989 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
USF1P22415 AC092675.2-201ENST00000413274 541 ntTSL 4 BASIC18.46■□□□□ 0.55
USF1P22415 ARMC6-201ENST00000269932 2412 ntAPPRIS P1 TSL 5 BASIC18.46■□□□□ 0.55
USF1P22415 DACT1-201ENST00000335867 2571 ntAPPRIS P3 TSL 1 (best) BASIC18.46■□□□□ 0.55
USF1P22415 ST3GAL5-268ENST00000640982 2465 ntAPPRIS ALT2 TSL 5 BASIC18.46■□□□□ 0.55
USF1P22415 TALDO1-201ENST00000319006 1346 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
USF1P22415 AC135048.1-201ENST00000566056 1318 ntTSL 2 BASIC18.46■□□□□ 0.55
Retrieved 100 of 98,524 protein–RNA pairs in 19 ms