Protein–RNA interactions for Protein: P16989

YBX3, Y-box-binding protein 3, humanhuman

Known RBP eCLIP

Length 372 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3P16989 POLE4-201ENST00000233699 602 ntTSL 315.72■□□□□ 0.113e-6■■■■□ 19.7
YBX3P16989 RUNX1-202ENST00000344691 7274 ntAPPRIS ALT1 TSL 1 (best) BASIC15.55■□□□□ 0.083e-6■■■■□ 19.7
YBX3P16989 MCRS1-207ENST00000548602 1666 ntTSL 1 (best)15.3■□□□□ 0.041e-11■■■■□ 19.7
YBX3P16989 MCRS1-211ENST00000550165 1936 ntAPPRIS P1 TSL 5 BASIC15.19■□□□□ 0.021e-11■■■■□ 19.7
YBX3P16989 IQSEC2-215ENST00000640005 1323 ntTSL 415.16■□□□□ 0.023e-6■■■■□ 19.7
YBX3P16989 NPC1-201ENST00000269228 5157 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.143e-6■■■■□ 19.7
YBX3P16989 ZC3H15-203ENST00000437396 556 ntTSL 414.04□□□□□ -0.163e-6■■■■□ 19.7
YBX3P16989 METTL4-203ENST00000574538 2742 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.173e-6■■■■□ 19.7
YBX3P16989 POLR3A-205ENST00000616246 1668 ntTSL 1 (best) BASIC13.97□□□□□ -0.173e-6■■■■□ 19.7
YBX3P16989 IQSEC2-214ENST00000639796 2351 ntTSL 313.52□□□□□ -0.243e-6■■■■□ 19.7
YBX3P16989 C3orf38-201ENST00000318887 2633 ntAPPRIS P1 TSL 1 (best) BASIC13.41□□□□□ -0.263e-6■■■■□ 19.7
YBX3P16989 PHF13-201ENST00000377648 3681 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.33e-6■■■■□ 19.7
YBX3P16989 SMG8-202ENST00000543872 3477 ntAPPRIS P1 TSL 5 BASIC12.72□□□□□ -0.373e-6■■■■□ 19.7
YBX3P16989 EIF1AD-204ENST00000526451 2761 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.43e-6■■■■□ 19.7
YBX3P16989 IQSEC2-206ENST00000638521 4501 ntAPPRIS ALT2 TSL 511.7□□□□□ -0.543e-6■■■■□ 19.7
YBX3P16989 ZC3H15-202ENST00000421536 1101 ntTSL 210.7□□□□□ -0.73e-6■■■■□ 19.7
YBX3P16989 METTL4-201ENST00000319888 3601 ntTSL 5 BASIC10.66□□□□□ -0.73e-6■■■■□ 19.7
YBX3P16989 AC093766.1-201ENST00000502606 866 ntTSL 3 BASIC10.58□□□□□ -0.723e-6■■■■□ 19.7
YBX3P16989 IQSEC2-201ENST00000375365 4004 ntAPPRIS P3 TSL 1 (best) BASIC10.49□□□□□ -0.733e-6■■■■□ 19.7
YBX3P16989 NPC1-210ENST00000591051 3171 ntTSL 210.31□□□□□ -0.763e-6■■■■□ 19.7
YBX3P16989 ZC3H15-201ENST00000337859 2138 ntAPPRIS P1 TSL 1 (best) BASIC10.3□□□□□ -0.763e-6■■■■□ 19.7
YBX3P16989 ZBTB21-206ENST00000425521 607 ntTSL 310.26□□□□□ -0.773e-6■■■■□ 19.7
YBX3P16989 EIF1AD-201ENST00000312234 2887 ntAPPRIS P1 TSL 1 (best) BASIC10.16□□□□□ -0.783e-6■■■■□ 19.7
YBX3P16989 EEF1A1P11-201ENST00000415278 1389 ntBASIC10.16□□□□□ -0.783e-6■■■■□ 19.7
YBX3P16989 IQSEC2-209ENST00000638869 3000 ntTSL 510.13□□□□□ -0.793e-6■■■■□ 19.7
YBX3P16989 METTL4-205ENST00000576251 1884 ntTSL 29.74□□□□□ -0.853e-6■■■■□ 19.7
YBX3P16989 MORC2-206ENST00000476152 811 ntTSL 59.32□□□□□ -0.923e-6■■■■□ 19.7
YBX3P16989 ZBTB21-203ENST00000398499 5806 ntAPPRIS P1 TSL 1 (best) BASIC9.23□□□□□ -0.933e-6■■■■□ 19.7
YBX3P16989 C3orf38-202ENST00000464919 586 ntTSL 49.15□□□□□ -0.943e-6■■■■□ 19.7
YBX3P16989 SCYL2-211ENST00000635101 3948 ntTSL 5 BASIC9.02□□□□□ -0.973e-6■■■■□ 19.7
YBX3P16989 GAN-202ENST00000568107 15244 ntAPPRIS P1 TSL 1 (best) BASIC8.24□□□□□ -1.093e-6■■■■□ 19.7
YBX3P16989 POLE4-203ENST00000465242 528 ntTSL 27.86□□□□□ -1.153e-6■■■■□ 19.7
YBX3P16989 ZC3H15-208ENST00000496289 554 ntTSL 57.8□□□□□ -1.163e-6■■■■□ 19.7
YBX3P16989 SMG8-206ENST00000582469 1144 ntTSL 57.65□□□□□ -1.183e-6■■■■□ 19.7
YBX3P16989 AC099850.2-201ENST00000577660 557 ntAPPRIS P1 TSL 3 BASIC7.65□□□□□ -1.183e-6■■■■□ 19.7
YBX3P16989 AC008575.1-201ENST00000520401 694 ntAPPRIS P1 TSL 3 BASIC7.62□□□□□ -1.193e-6■■■■□ 19.7
YBX3P16989 ZBTB21-204ENST00000398505 6846 ntTSL 1 (best) BASIC7.46□□□□□ -1.223e-6■■■■□ 19.7
YBX3P16989 ZBTB38-202ENST00000441582 3662 ntAPPRIS P1 TSL 2 BASIC7.39□□□□□ -1.233e-6■■■■□ 19.7
YBX3P16989 ZBTB38-210ENST00000509883 2659 ntTSL 1 (best)7.29□□□□□ -1.243e-6■■■■□ 19.7
YBX3P16989 MBD2-203ENST00000578272 701 ntTSL 57.23□□□□□ -1.253e-6■■■■□ 19.7
YBX3P16989 AC093766.1-202ENST00000513400 718 ntTSL 3 BASIC6.57□□□□□ -1.363e-6■■■■□ 19.7
YBX3P16989 ZBTB21-205ENST00000398511 5608 ntAPPRIS P1 TSL 1 (best) BASIC6.56□□□□□ -1.363e-6■■■■□ 19.7
YBX3P16989 ZC3H15-207ENST00000481101 558 ntTSL 46.52□□□□□ -1.373e-6■■■■□ 19.7
YBX3P16989 ZBTB38-201ENST00000321464 3588 ntAPPRIS P1 BASIC6.16□□□□□ -1.423e-6■■■■□ 19.7
YBX3P16989 ZBTB38-222ENST00000637056 6056 ntAPPRIS P1 TSL 5 BASIC6.11□□□□□ -1.433e-6■■■■□ 19.7
YBX3P16989 ZBTB38-221ENST00000636289 2797 ntTSL 55.84□□□□□ -1.473e-6■■■■□ 19.7
YBX3P16989 ZC3H15-205ENST00000468120 601 ntTSL 45.65□□□□□ -1.53e-6■■■■□ 19.7
YBX3P16989 ZBTB21-201ENST00000310826 7449 ntAPPRIS P1 TSL 1 (best) BASIC5.53□□□□□ -1.523e-6■■■■□ 19.7
YBX3P16989 APC-208ENST00000508624 7406 ntTSL 1 (best)5.3□□□□□ -1.563e-6■■■■□ 19.7
YBX3P16989 ZBTB38-220ENST00000514251 7683 ntAPPRIS P1 TSL 2 BASIC5.13□□□□□ -1.593e-6■■■■□ 19.7
YBX3P16989 METTL4-202ENST00000573134 5190 ntTSL 1 (best)4.65□□□□□ -1.663e-6■■■■□ 19.7
YBX3P16989 APC-207ENST00000508376 10619 ntAPPRIS P1 TSL 1 (best) BASIC4.39□□□□□ -1.713e-6■■■■□ 19.7
YBX3P16989 POLE4-204ENST00000473023 357 ntTSL 54.34□□□□□ -1.713e-6■■■■□ 19.7
YBX3P16989 APC-201ENST00000257430 10701 ntAPPRIS P1 TSL 5 BASIC2.83□□□□□ -1.963e-6■■■■□ 19.7
YBX3P16989 GNB1-203ENST00000437146 423 ntTSL 35.53□□□□□ -1.523e-13■■■■□ 19.7
YBX3P16989 YOD1-201ENST00000315927 6265 ntAPPRIS P1 TSL 1 (best) BASIC11.47□□□□□ -0.571e-14■■■■□ 19.7
YBX3P16989 YOD1-202ENST00000367084 6291 ntTSL 2 BASIC8.07□□□□□ -1.121e-14■■■■□ 19.7
YBX3P16989 MAP1B-201ENST00000296755 12036 ntAPPRIS P1 TSL 1 (best) BASIC9.88□□□□□ -0.831e-6■■■■□ 19.7
YBX3P16989 IMMT-211ENST00000490238 699 ntTSL 47.5□□□□□ -1.213e-13■■■■□ 19.6
YBX3P16989 SYNGR3-206ENST00000618464 1213 ntTSL 1 (best) BASIC29.73■■■□□ 2.351e-6■■■■□ 19.6
YBX3P16989 SYNGR3-201ENST00000248121 2051 ntAPPRIS P1 TSL 1 (best) BASIC26.94■■□□□ 1.91e-6■■■■□ 19.6
YBX3P16989 SERPINF1-205ENST00000571360 478 ntTSL 320.92■□□□□ 0.942e-7■■■■□ 19.6
YBX3P16989 SERPINF1-206ENST00000571870 739 ntTSL 220.49■□□□□ 0.872e-7■■■■□ 19.6
YBX3P16989 SERPINF1-210ENST00000573770 789 ntTSL 316.4■□□□□ 0.222e-7■■■■□ 19.6
YBX3P16989 SERPINF1-202ENST00000570731 459 ntTSL 515.83■□□□□ 0.122e-7■■■■□ 19.6
YBX3P16989 SERPINF1-212ENST00000577053 731 ntTSL 515.53■□□□□ 0.082e-7■■■■□ 19.6
YBX3P16989 KPNB1-202ENST00000535458 3163 ntTSL 2 BASIC9.12□□□□□ -0.952e-7■■■■□ 19.6
YBX3P16989 ADSL-211ENST00000623632 847 ntTSL 525.14■■□□□ 1.622e-14■■■■□ 19.6
YBX3P16989 ADSL-214ENST00000624474 678 ntTSL 516.12■□□□□ 0.172e-14■■■■□ 19.6
YBX3P16989 ADSL-209ENST00000623287 856 ntTSL 514.81□□□□□ -0.042e-14■■■■□ 19.6
YBX3P16989 ADSL-221ENST00000637666 1135 ntTSL 514.37□□□□□ -0.112e-14■■■■□ 19.6
YBX3P16989 ADSL-205ENST00000477111 826 ntTSL 312.89□□□□□ -0.352e-14■■■■□ 19.6
YBX3P16989 ADSL-223ENST00000638161 668 ntTSL 511.57□□□□□ -0.562e-14■■■■□ 19.6
YBX3P16989 ADSL-212ENST00000623978 712 ntTSL 58.68□□□□□ -1.022e-14■■■■□ 19.6
YBX3P16989 ADSL-217ENST00000636124 280 ntTSL 56.99□□□□□ -1.292e-14■■■■□ 19.6
YBX3P16989 SPAG9-202ENST00000357122 4761 ntAPPRIS P2 TSL 1 (best) BASIC18.46■□□□□ 0.558e-7■■■■□ 19.6
YBX3P16989 SPAG9-205ENST00000505279 4659 ntTSL 1 (best) BASIC16.88■□□□□ 0.298e-7■■■■□ 19.6
YBX3P16989 SPAG9-222ENST00000618113 8246 ntAPPRIS ALT1 TSL 5 BASIC14.91□□□□□ -0.028e-7■■■■□ 19.6
YBX3P16989 SPAG9-201ENST00000262013 8273 ntTSL 1 (best) BASIC14.66□□□□□ -0.068e-7■■■■□ 19.6
YBX3P16989 SPAG9-209ENST00000510283 4949 ntTSL 2 BASIC6.82□□□□□ -1.328e-7■■■■□ 19.6
YBX3P16989 MRPL21-208ENST00000567045 932 ntTSL 2 BASIC23.38■■□□□ 1.338e-10■■■■□ 19.6
YBX3P16989 DRG1-202ENST00000416465 612 ntTSL 524.87■■□□□ 1.573e-6■■■■□ 19.6
YBX3P16989 DRG1-205ENST00000486584 318 ntTSL 518.58■□□□□ 0.563e-6■■■■□ 19.6
YBX3P16989 DRG1-203ENST00000433341 808 ntTSL 312.02□□□□□ -0.493e-6■■■■□ 19.6
YBX3P16989 MATK-202ENST00000395040 1907 ntAPPRIS ALT2 TSL 1 (best) BASIC28.36■■■□□ 2.134e-8■■■■□ 19.6
YBX3P16989 MATK-204ENST00000585778 1994 ntAPPRIS ALT2 TSL 1 (best) BASIC28.11■■■□□ 2.094e-8■■■■□ 19.6
YBX3P16989 MATK-201ENST00000310132 2133 ntAPPRIS ALT2 TSL 1 (best) BASIC26.99■■□□□ 1.914e-8■■■■□ 19.6
YBX3P16989 MATK-205ENST00000587180 741 ntTSL 524.35■■□□□ 1.494e-8■■■■□ 19.6
YBX3P16989 MATK-215ENST00000619596 1740 ntAPPRIS P4 TSL 2 BASIC23.87■■□□□ 1.414e-8■■■■□ 19.6
YBX3P16989 MATK-207ENST00000590028 724 ntTSL 423.78■■□□□ 1.44e-8■■■■□ 19.6
YBX3P16989 RPS15A-209ENST00000573554 606 ntTSL 1 (best)22.52■■□□□ 1.26e-54■■■■□ 19.6
YBX3P16989 MATK-203ENST00000395045 2073 ntAPPRIS P4 TSL 2 BASIC21.84■■□□□ 1.094e-8■■■■□ 19.6
YBX3P16989 MATK-208ENST00000590493 801 ntTSL 319.69■□□□□ 0.744e-8■■■■□ 19.6
YBX3P16989 MATK-206ENST00000588983 711 ntTSL 318.32■□□□□ 0.524e-8■■■■□ 19.6
YBX3P16989 RPS15A-201ENST00000322989 2203 ntAPPRIS P1 TSL 1 (best) BASIC12.17□□□□□ -0.466e-54■■■■□ 19.6
YBX3P16989 RPS15A-208ENST00000572008 797 ntTSL 510.25□□□□□ -0.776e-54■■■■□ 19.6
YBX3P16989 AC138811.2-201ENST00000567078 764 ntAPPRIS P1 TSL 3 BASIC8.11□□□□□ -1.116e-54■■■■□ 19.6
YBX3P16989 RPS15A-203ENST00000563390 525 ntAPPRIS P1 TSL 1 (best) BASIC7.64□□□□□ -1.196e-54■■■■□ 19.6
YBX3P16989 RPS15A-207ENST00000569365 481 ntTSL 36.49□□□□□ -1.376e-54■■■■□ 19.6
YBX3P16989 RPS15A-202ENST00000562935 427 ntTSL 26.02□□□□□ -1.456e-54■■■■□ 19.6
Retrieved 100 of 29,075 protein–RNA pairs in 463.8 ms