Protein–RNA interactions for Protein: P02549

SPTA1, Spectrin alpha chain, erythrocytic 1, humanhuman

Predictions only

Length 2,419 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SPTA1P02549 HECA-201ENST00000367658 5614 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
SPTA1P02549 RPUSD1-201ENST00000007264 2050 ntAPPRIS P1 TSL 2 BASIC20.01■□□□□ 0.79
SPTA1P02549 AC138649.1-201ENST00000619611 1449 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
SPTA1P02549 SEC22C-207ENST00000423701 1458 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
SPTA1P02549 MRPL12-201ENST00000333676 1028 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
SPTA1P02549 KRTAP17-1-201ENST00000334202 779 ntAPPRIS P1 BASIC20.01■□□□□ 0.79
SPTA1P02549 LINC01117-201ENST00000443670 699 ntTSL 5 BASIC20.01■□□□□ 0.79
SPTA1P02549 SNAP23-210ENST00000564153 775 ntTSL 2 BASIC20.01■□□□□ 0.79
SPTA1P02549 ZNF276-202ENST00000443381 2267 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
SPTA1P02549 SPHK1-210ENST00000592299 1821 ntAPPRIS P3 TSL 1 (best) BASIC20■□□□□ 0.79
SPTA1P02549 PTP4A3-204ENST00000521578 1717 ntAPPRIS P1 TSL 5 BASIC20■□□□□ 0.79
SPTA1P02549 SLC35B2-202ENST00000393812 2043 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
SPTA1P02549 LRRC3C-201ENST00000377924 891 ntAPPRIS P1 TSL 3 BASIC20■□□□□ 0.79
SPTA1P02549 AL121832.2-201ENST00000610979 668 ntBASIC20■□□□□ 0.79
SPTA1P02549 TRIM72-202ENST00000613872 1573 ntTSL 1 (best) BASIC20■□□□□ 0.79
SPTA1P02549 RNASEH2B-201ENST00000336617 1629 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
SPTA1P02549 XXYLT1-202ENST00000356740 564 ntTSL 2 BASIC20■□□□□ 0.79
SPTA1P02549 MMAB-206ENST00000540016 945 ntTSL 3 BASIC20■□□□□ 0.79
SPTA1P02549 DM1-AS-203ENST00000590076 730 ntTSL 4 BASIC20■□□□□ 0.79
SPTA1P02549 KANSL2-215ENST00000553086 1830 ntTSL 5 BASIC19.99■□□□□ 0.79
SPTA1P02549 ADAMTS13-204ENST00000371911 1155 ntTSL 1 (best) BASIC19.99■□□□□ 0.79
SPTA1P02549 NAA60-204ENST00000421765 1045 ntTSL 2 BASIC19.99■□□□□ 0.79
SPTA1P02549 MAGI2-AS3-211ENST00000451809 707 ntTSL 3 BASIC19.99■□□□□ 0.79
SPTA1P02549 AC044860.1-203ENST00000560811 844 ntTSL 3 BASIC19.99■□□□□ 0.79
SPTA1P02549 AIRN-201ENST00000601203 4374 ntBASIC19.99■□□□□ 0.79
SPTA1P02549 RFWD2-201ENST00000308769 2124 ntTSL 1 (best) BASIC19.99■□□□□ 0.79
SPTA1P02549 UCHL5-201ENST00000367448 1534 ntTSL 1 (best) BASIC19.99■□□□□ 0.79
SPTA1P02549 TMCO6-201ENST00000252100 1834 ntTSL 1 (best) BASIC19.99■□□□□ 0.79
SPTA1P02549 FAAH-201ENST00000243167 2094 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
SPTA1P02549 FAM124A-201ENST00000280057 2104 ntTSL 2 BASIC19.98■□□□□ 0.79
SPTA1P02549 FNDC11-201ENST00000370097 1119 ntAPPRIS P1 TSL 2 BASIC19.98■□□□□ 0.79
SPTA1P02549 AC034102.6-201ENST00000550947 559 ntTSL 4 BASIC19.98■□□□□ 0.79
SPTA1P02549 UBE2DNL-204ENST00000602536 740 ntBASIC19.98■□□□□ 0.79
SPTA1P02549 AC144652.1-201ENST00000609974 1624 ntBASIC19.98■□□□□ 0.79
SPTA1P02549 SCAND1-202ENST00000373991 1727 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
SPTA1P02549 LINC02043-201ENST00000419745 1832 ntTSL 2 BASIC19.98■□□□□ 0.79
SPTA1P02549 BCAP31-207ENST00000458587 1810 ntTSL 1 (best) BASIC19.98■□□□□ 0.79
SPTA1P02549 GUK1-209ENST00000366730 937 ntAPPRIS P3 TSL 3 BASIC19.98■□□□□ 0.79
SPTA1P02549 CRIP2-202ENST00000483017 1176 ntTSL 2 BASIC19.98■□□□□ 0.79
SPTA1P02549 TNNI3-207ENST00000588882 669 ntTSL 2 BASIC19.98■□□□□ 0.79
SPTA1P02549 KCNQ2-201ENST00000344425 1426 ntTSL 1 (best) BASIC19.98■□□□□ 0.79
SPTA1P02549 AC105219.1-201ENST00000531565 1963 ntTSL 1 (best) BASIC19.98■□□□□ 0.79
SPTA1P02549 LINC01342-201ENST00000416774 1620 ntTSL 1 (best) BASIC19.97■□□□□ 0.79
SPTA1P02549 SGO1-AS1-202ENST00000448208 819 ntTSL 3 BASIC19.97■□□□□ 0.79
SPTA1P02549 CTAG1A-201ENST00000593606 993 ntTSL 5 BASIC19.97■□□□□ 0.79
SPTA1P02549 AC231657.2-201ENST00000624556 255 ntBASIC19.97■□□□□ 0.79
SPTA1P02549 ZDHHC7-203ENST00000564466 1488 ntTSL 5 BASIC19.97■□□□□ 0.79
SPTA1P02549 ZNF324-202ENST00000535298 1006 ntTSL 5 BASIC19.97■□□□□ 0.79
SPTA1P02549 MBD3L1-202ENST00000595891 872 ntAPPRIS P1 TSL 2 BASIC19.97■□□□□ 0.79
SPTA1P02549 ADD3-AS1-204ENST00000627565 388 ntTSL 3 BASIC19.97■□□□□ 0.79
SPTA1P02549 ZNF419-203ENST00000354197 1569 ntTSL 5 BASIC19.97■□□□□ 0.79
SPTA1P02549 CENPN-201ENST00000299572 1398 ntTSL 1 (best) BASIC19.96■□□□□ 0.79
SPTA1P02549 GCSHP5-201ENST00000443090 522 ntBASIC19.96■□□□□ 0.79
SPTA1P02549 AC099522.1-201ENST00000505955 881 ntTSL 3 BASIC19.96■□□□□ 0.79
SPTA1P02549 AC133552.2-202ENST00000575694 574 ntBASIC19.96■□□□□ 0.79
SPTA1P02549 SCUBE1-208ENST00000615096 1119 ntTSL 2 BASIC19.96■□□□□ 0.79
SPTA1P02549 MYO10-205ENST00000507288 1677 ntTSL 1 (best) BASIC19.96■□□□□ 0.79
SPTA1P02549 SPANXA2-OT1-201ENST00000622372 1686 ntTSL 2 BASIC19.96■□□□□ 0.79
SPTA1P02549 PROSER2-205ENST00000622831 1646 ntAPPRIS ALT2 TSL 1 (best) BASIC19.96■□□□□ 0.79
SPTA1P02549 ILKAP-211ENST00000612675 1335 ntTSL 1 (best) BASIC19.96■□□□□ 0.79
SPTA1P02549 CDIPT-207ENST00000566113 1671 ntTSL 2 BASIC19.96■□□□□ 0.79
SPTA1P02549 GGTLC1-202ENST00000286890 1028 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
SPTA1P02549 SNAP23-214ENST00000567094 834 ntTSL 3 BASIC19.96■□□□□ 0.79
SPTA1P02549 KRT18P29-201ENST00000397031 1267 ntBASIC19.95■□□□□ 0.78
SPTA1P02549 WIPF1-207ENST00000410117 777 ntTSL 3 BASIC19.95■□□□□ 0.78
SPTA1P02549 ARL5A-202ENST00000428992 747 ntTSL 2 BASIC19.95■□□□□ 0.78
SPTA1P02549 PRR7-201ENST00000323249 1480 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
SPTA1P02549 PON2-218ENST00000633531 1653 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
SPTA1P02549 ZCCHC9-204ENST00000438268 1248 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
SPTA1P02549 RNA5SP413-201ENST00000516373 109 ntBASIC19.95■□□□□ 0.78
SPTA1P02549 AC005789.1-201ENST00000585411 297 ntTSL 3 BASIC19.95■□□□□ 0.78
SPTA1P02549 HMCES-203ENST00000417226 1490 ntTSL 1 (best) BASIC19.95■□□□□ 0.78
SPTA1P02549 NOXA1-202ENST00000392815 1464 ntTSL 1 (best) BASIC19.94■□□□□ 0.78
SPTA1P02549 NOXO1-203ENST00000397280 1147 ntAPPRIS ALT2 TSL 1 (best) BASIC19.94■□□□□ 0.78
SPTA1P02549 AC079140.4-201ENST00000507448 529 ntBASIC19.94■□□□□ 0.78
SPTA1P02549 MYCNOS-205ENST00000641950 531 ntBASIC19.94■□□□□ 0.78
SPTA1P02549 AC011498.4-201ENST00000586020 1803 ntAPPRIS P1 TSL 2 BASIC19.94■□□□□ 0.78
SPTA1P02549 USP45-202ENST00000329966 1444 ntTSL 1 (best) BASIC19.94■□□□□ 0.78
SPTA1P02549 E2F5-203ENST00000418930 1890 ntAPPRIS ALT2 TSL 1 (best) BASIC19.94■□□□□ 0.78
SPTA1P02549 PLEKHF1-204ENST00000592810 1357 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
SPTA1P02549 TSPAN13-201ENST00000262067 2093 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
SPTA1P02549 PPP1CA-202ENST00000358239 1054 ntTSL 2 BASIC19.93■□□□□ 0.78
SPTA1P02549 TSPAN4-206ENST00000397408 1430 ntAPPRIS P1 TSL 2 BASIC19.93■□□□□ 0.78
SPTA1P02549 LINC01637-201ENST00000444039 684 ntTSL 2 BASIC19.93■□□□□ 0.78
SPTA1P02549 AC027451.1-201ENST00000530667 553 ntTSL 4 BASIC19.93■□□□□ 0.78
SPTA1P02549 AC133041.1-202ENST00000642053 222 ntBASIC19.93■□□□□ 0.78
SPTA1P02549 NFKBIB-204ENST00000572515 1929 ntTSL 1 (best) BASIC19.93■□□□□ 0.78
SPTA1P02549 KLHDC9-201ENST00000368011 1314 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
SPTA1P02549 XPA-201ENST00000375128 1417 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
SPTA1P02549 MAL-201ENST00000309988 1112 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
SPTA1P02549 OSCAR-211ENST00000617140 1547 ntAPPRIS ALT2 TSL 5 BASIC19.93■□□□□ 0.78
SPTA1P02549 PYURF-201ENST00000273968 1361 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
SPTA1P02549 AZIN2-204ENST00000373443 2048 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
SPTA1P02549 AC009506.1-201ENST00000418474 1494 ntTSL 2 BASIC19.92■□□□□ 0.78
SPTA1P02549 ARF1-213ENST00000540651 1972 ntAPPRIS P1 TSL 2 BASIC19.92■□□□□ 0.78
SPTA1P02549 DVL1-201ENST00000378888 3239 ntAPPRIS ALT1 TSL 5 BASIC19.92■□□□□ 0.78
SPTA1P02549 RAC1-202ENST00000356142 907 ntTSL 1 (best) BASIC19.92■□□□□ 0.78
SPTA1P02549 C16orf86-201ENST00000403458 1267 ntAPPRIS P2 TSL 1 (best) BASIC19.92■□□□□ 0.78
SPTA1P02549 C19orf81-201ENST00000425202 765 ntAPPRIS P2 TSL 5 BASIC19.92■□□□□ 0.78
SPTA1P02549 AC104187.1-201ENST00000607510 612 ntBASIC19.92■□□□□ 0.78
Retrieved 100 of 98,524 protein–RNA pairs in 15.9 ms