Protein–RNA interactions for Protein: O95025

SEMA3D, Semaphorin-3D, humanhuman

Predictions only

Length 777 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SEMA3DO95025 TOX2-201ENST00000341197 1880 ntAPPRIS P1 TSL 2 BASIC20.96■□□□□ 0.95
SEMA3DO95025 DES-201ENST00000373960 2248 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
SEMA3DO95025 ADD1-202ENST00000355842 4743 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
SEMA3DO95025 KLC3-204ENST00000585434 1764 ntAPPRIS ALT1 TSL 1 (best) BASIC20.95■□□□□ 0.94
SEMA3DO95025 TARBP2-201ENST00000266987 1867 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
SEMA3DO95025 WDR86-AS1-204ENST00000489632 751 ntTSL 3 BASIC20.95■□□□□ 0.94
SEMA3DO95025 MYCN-201ENST00000281043 2602 ntAPPRIS P1 TSL 5 BASIC20.95■□□□□ 0.94
SEMA3DO95025 SHMT1-203ENST00000354098 1656 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
SEMA3DO95025 CREB1-205ENST00000430624 2005 ntAPPRIS P1 TSL 5 BASIC20.95■□□□□ 0.94
SEMA3DO95025 LRRC34-201ENST00000446859 1718 ntAPPRIS ALT2 TSL 2 BASIC20.95■□□□□ 0.94
SEMA3DO95025 USP12-201ENST00000282344 4511 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
SEMA3DO95025 NKX3-2-201ENST00000382438 2801 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
SEMA3DO95025 PLPP5-209ENST00000529359 2185 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
SEMA3DO95025 ABHD16B-201ENST00000369916 1491 ntAPPRIS P1 BASIC20.94■□□□□ 0.94
SEMA3DO95025 IRF3-207ENST00000593922 1494 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
SEMA3DO95025 SLC30A2-201ENST00000374276 2494 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
SEMA3DO95025 TMEM121B-201ENST00000331437 4954 ntAPPRIS P3 BASIC20.94■□□□□ 0.94
SEMA3DO95025 ITM2C-202ENST00000326427 2078 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
SEMA3DO95025 IGFBP1-201ENST00000275525 1653 ntAPPRIS P2 TSL 1 (best) BASIC20.94■□□□□ 0.94
SEMA3DO95025 UBE2J2-203ENST00000360466 1047 ntAPPRIS P1 TSL 2 BASIC20.94■□□□□ 0.94
SEMA3DO95025 ZNF419-210ENST00000520540 568 ntTSL 4 BASIC20.94■□□□□ 0.94
SEMA3DO95025 TMEM218-215ENST00000532407 1103 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
SEMA3DO95025 DUX4L19-201ENST00000557448 1267 ntBASIC20.94■□□□□ 0.94
SEMA3DO95025 AL138724.1-201ENST00000606771 1088 ntBASIC20.94■□□□□ 0.94
SEMA3DO95025 AC091982.4-201ENST00000623943 726 ntTSL 2 BASIC20.94■□□□□ 0.94
SEMA3DO95025 NBPF26-209ENST00000624419 1133 ntTSL 5 BASIC20.94■□□□□ 0.94
SEMA3DO95025 AP004608.1-202ENST00000533390 1863 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
SEMA3DO95025 CDKN1C-202ENST00000414822 2051 ntAPPRIS P3 TSL 1 (best) BASIC20.93■□□□□ 0.94
SEMA3DO95025 ARL2BP-201ENST00000219204 2130 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
SEMA3DO95025 RNF39-201ENST00000244360 2206 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
SEMA3DO95025 NKX2-4-201ENST00000351817 2238 ntAPPRIS P1 TSL 5 BASIC20.93■□□□□ 0.94
SEMA3DO95025 SLC4A3-203ENST00000358055 4454 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
SEMA3DO95025 AC090377.1-201ENST00000585691 1762 ntTSL 3 BASIC20.93■□□□□ 0.94
SEMA3DO95025 HOXC8-201ENST00000040584 1889 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
SEMA3DO95025 TNFRSF6B-201ENST00000369996 1124 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
SEMA3DO95025 VAMP2-204ENST00000488857 874 ntAPPRIS ALT1 TSL 3 BASIC20.93■□□□□ 0.94
SEMA3DO95025 HAUS7-202ENST00000370211 1363 ntAPPRIS P2 TSL 1 (best) BASIC20.93■□□□□ 0.94
SEMA3DO95025 TIMM50-201ENST00000314349 1612 ntAPPRIS P2 TSL 1 (best) BASIC20.93■□□□□ 0.94
SEMA3DO95025 AMER2-202ENST00000515384 3197 ntAPPRIS P1 BASIC20.92■□□□□ 0.94
SEMA3DO95025 SLC35D3-201ENST00000331858 2359 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
SEMA3DO95025 NTN1-201ENST00000173229 5954 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
SEMA3DO95025 TERT-206ENST00000508104 2486 ntTSL 5 BASIC20.92■□□□□ 0.94
SEMA3DO95025 MAF-202ENST00000393350 6384 ntAPPRIS ALT2 BASIC20.92■□□□□ 0.94
SEMA3DO95025 AC007009.1-201ENST00000458624 429 ntTSL 2 BASIC20.92■□□□□ 0.94
SEMA3DO95025 SENCR-201ENST00000526269 1298 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
SEMA3DO95025 CA15P2-201ENST00000611168 834 ntBASIC20.92■□□□□ 0.94
SEMA3DO95025 SYF2-201ENST00000236273 1345 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
SEMA3DO95025 AL391650.1-201ENST00000448923 1468 ntAPPRIS P1 TSL 2 BASIC20.92■□□□□ 0.94
SEMA3DO95025 AVPR2-201ENST00000337474 1622 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
SEMA3DO95025 KCNN1-204ENST00000615435 1691 ntAPPRIS ALT1 TSL 5 BASIC20.92■□□□□ 0.94
SEMA3DO95025 CNTD2-202ENST00000430325 1817 ntAPPRIS P2 TSL 2 BASIC20.92■□□□□ 0.94
SEMA3DO95025 AOC3-207ENST00000617500 2392 ntTSL 4 BASIC20.92■□□□□ 0.94
SEMA3DO95025 UBE2S-201ENST00000264552 2548 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
SEMA3DO95025 ZNF444-201ENST00000337080 2042 ntAPPRIS P3 TSL 1 (best) BASIC20.91■□□□□ 0.94
SEMA3DO95025 SIMC1-202ENST00000341199 2056 ntAPPRIS P3 TSL 2 BASIC20.91■□□□□ 0.94
SEMA3DO95025 NRL-203ENST00000397002 1976 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
SEMA3DO95025 ANKRD28-201ENST00000399451 6564 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
SEMA3DO95025 MYCBPAP-202ENST00000419930 1640 ntAPPRIS ALT2 TSL 1 (best) BASIC20.91■□□□□ 0.94
SEMA3DO95025 MYD88-205ENST00000424893 1279 ntAPPRIS ALT2 TSL 1 (best) BASIC20.91■□□□□ 0.94
SEMA3DO95025 AC073934.1-201ENST00000490314 495 ntTSL 4 BASIC20.91■□□□□ 0.94
SEMA3DO95025 EGR4-202ENST00000545030 2372 ntAPPRIS P2 TSL 1 (best) BASIC20.91■□□□□ 0.94
SEMA3DO95025 COL15A1-205ENST00000610452 5422 ntAPPRIS ALT2 TSL 5 BASIC20.91■□□□□ 0.94
SEMA3DO95025 ST7L-201ENST00000343210 1866 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
SEMA3DO95025 CLTB-201ENST00000310418 1215 ntAPPRIS P4 TSL 1 (best) BASIC20.9■□□□□ 0.94
SEMA3DO95025 CLTB-202ENST00000345807 1161 ntAPPRIS ALT1 TSL 1 (best) BASIC20.9■□□□□ 0.94
SEMA3DO95025 OR2I1P-207ENST00000453522 948 ntBASIC20.9■□□□□ 0.94
SEMA3DO95025 ACYP1-205ENST00000555463 789 ntTSL 2 BASIC20.9■□□□□ 0.94
SEMA3DO95025 SF1-220ENST00000626028 704 ntTSL 2 BASIC20.9■□□□□ 0.94
SEMA3DO95025 NRSN1-204ENST00000378491 2354 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
SEMA3DO95025 TMEM235-205ENST00000586400 2272 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
SEMA3DO95025 PLEKHO1-201ENST00000369124 2050 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
SEMA3DO95025 CRHR1-202ENST00000314537 2535 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.94
SEMA3DO95025 SYT6-210ENST00000641643 1587 ntBASIC20.89■□□□□ 0.94
SEMA3DO95025 NEK6-214ENST00000545174 2573 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
SEMA3DO95025 KRTAP5-4-201ENST00000399682 1181 ntAPPRIS P5 BASIC20.89■□□□□ 0.93
SEMA3DO95025 PTCHD3P2-201ENST00000424937 1205 ntBASIC20.89■□□□□ 0.93
SEMA3DO95025 FAM66C-205ENST00000456135 1216 ntTSL 5 BASIC20.89■□□□□ 0.93
SEMA3DO95025 AC096887.1-203ENST00000607203 768 ntAPPRIS ALT2 TSL 5 BASIC20.89■□□□□ 0.93
SEMA3DO95025 KRTAP5-4-202ENST00000616115 660 ntAPPRIS ALT2 TSL 5 BASIC20.89■□□□□ 0.93
SEMA3DO95025 AL031602.1-201ENST00000633169 911 ntBASIC20.89■□□□□ 0.93
SEMA3DO95025 AL121749.1-201ENST00000635993 1768 ntTSL 5 BASIC20.89■□□□□ 0.93
SEMA3DO95025 OSBPL5-208ENST00000478260 2653 ntTSL 2 BASIC20.89■□□□□ 0.93
SEMA3DO95025 TMEM198B-205ENST00000487582 1581 ntTSL 1 (best) BASIC20.89■□□□□ 0.93
SEMA3DO95025 AC138028.2-201ENST00000440406 1539 ntTSL 2 BASIC20.88■□□□□ 0.93
SEMA3DO95025 UHRF1BP1L-202ENST00000356828 2023 ntAPPRIS ALT2 TSL 1 (best) BASIC20.88■□□□□ 0.93
SEMA3DO95025 HEXB-201ENST00000261416 1901 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
SEMA3DO95025 FAM185A-201ENST00000409231 1446 ntAPPRIS ALT2 TSL 2 BASIC20.88■□□□□ 0.93
SEMA3DO95025 NIPA2-205ENST00000539711 1412 ntTSL 2 BASIC20.88■□□□□ 0.93
SEMA3DO95025 LINC00526-201ENST00000581067 1875 ntBASIC20.88■□□□□ 0.93
SEMA3DO95025 GRM6-202ENST00000517717 2673 ntAPPRIS P1 TSL 5 BASIC20.88■□□□□ 0.93
SEMA3DO95025 MAST4-206ENST00000406374 1066 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
SEMA3DO95025 TMEM165-204ENST00000506198 828 ntTSL 2 BASIC20.88■□□□□ 0.93
SEMA3DO95025 CCER2-201ENST00000571838 1057 ntAPPRIS P2 TSL 5 BASIC20.88■□□□□ 0.93
SEMA3DO95025 WISP2-203ENST00000372868 1600 ntAPPRIS P1 TSL 3 BASIC20.88■□□□□ 0.93
SEMA3DO95025 NR0B1-202ENST00000378970 2021 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
SEMA3DO95025 FAHD1-201ENST00000382666 1964 ntTSL 2 BASIC20.88■□□□□ 0.93
SEMA3DO95025 TMEM165-201ENST00000381334 1928 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
SEMA3DO95025 CARM1-201ENST00000327064 3330 ntAPPRIS P2 TSL 1 (best) BASIC20.88■□□□□ 0.93
SEMA3DO95025 STX4-202ENST00000394998 1498 ntTSL 2 BASIC20.88■□□□□ 0.93
SEMA3DO95025 NUDT16L1-204ENST00000586536 1406 ntTSL 2 BASIC20.87■□□□□ 0.93
Retrieved 100 of 98,524 protein–RNA pairs in 19 ms