Protein–RNA interactions for Protein: O43542

XRCC3, DNA repair protein XRCC3, humanhuman

Predictions only

Length 346 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
XRCC3O43542 CENPV-201ENST00000299736 1165 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
XRCC3O43542 DISC1-205ENST00000366636 2224 ntAPPRIS P4 TSL 1 (best) BASIC18.74■□□□□ 0.59
XRCC3O43542 GFRA3-201ENST00000274721 2039 ntAPPRIS P2 TSL 1 (best) BASIC18.74■□□□□ 0.59
XRCC3O43542 GOLGA2P6-201ENST00000340929 2049 ntBASIC18.74■□□□□ 0.59
XRCC3O43542 SLC25A5-AS1-202ENST00000445759 1616 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
XRCC3O43542 HSF4-225ENST00000584272 1549 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
XRCC3O43542 MAP2K5-204ENST00000395476 1689 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
XRCC3O43542 P2RY2-203ENST00000393597 2107 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
XRCC3O43542 MPND-202ENST00000359935 1475 ntAPPRIS ALT2 TSL 2 BASIC18.73■□□□□ 0.59
XRCC3O43542 AOC1-202ENST00000416793 2453 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
XRCC3O43542 TBL1Y-202ENST00000355162 2376 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
XRCC3O43542 C20orf24-201ENST00000342422 896 ntTSL 2 BASIC18.73■□□□□ 0.59
XRCC3O43542 C20orf24-202ENST00000344795 1114 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
XRCC3O43542 AL354928.1-201ENST00000438380 617 ntTSL 2 BASIC18.73■□□□□ 0.59
XRCC3O43542 AC120024.1-201ENST00000562672 995 ntBASIC18.73■□□□□ 0.59
XRCC3O43542 UBE2I-213ENST00000566587 1098 ntAPPRIS P1 TSL 2 BASIC18.73■□□□□ 0.59
XRCC3O43542 MIR4449-201ENST00000578365 66 ntBASIC18.73■□□□□ 0.59
XRCC3O43542 SEC11C-204ENST00000587834 1202 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
XRCC3O43542 GNAS-AS1_1.1-201ENST00000621898 103 ntBASIC18.73■□□□□ 0.59
XRCC3O43542 CIZ1-206ENST00000372954 2731 ntAPPRIS ALT2 TSL 1 (best) BASIC18.73■□□□□ 0.59
XRCC3O43542 RAB11FIP4-211ENST00000621161 8628 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
XRCC3O43542 SOX17-201ENST00000297316 2342 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
XRCC3O43542 DAZAP2-201ENST00000412716 2598 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
XRCC3O43542 BAZ1A-202ENST00000360310 6010 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
XRCC3O43542 HTRA3-202ENST00000382512 2023 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
XRCC3O43542 FAM72B-202ENST00000369390 2396 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
XRCC3O43542 GATA4-207ENST00000532059 1459 ntAPPRIS ALT1 TSL 1 (best) BASIC18.72■□□□□ 0.59
XRCC3O43542 BX005266.2-202ENST00000446626 2245 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
XRCC3O43542 SNAP23-202ENST00000349777 2480 ntTSL 2 BASIC18.72■□□□□ 0.59
XRCC3O43542 TRIM46-204ENST00000368385 1864 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
XRCC3O43542 LTBP3-201ENST00000301873 4443 ntAPPRIS ALT2 TSL 2 BASIC18.72■□□□□ 0.59
XRCC3O43542 MT2A-201ENST00000245185 786 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
XRCC3O43542 APOE-201ENST00000252486 1208 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
XRCC3O43542 PFDN2-201ENST00000368010 677 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
XRCC3O43542 GRPEL2-204ENST00000513661 546 ntTSL 2 BASIC18.72■□□□□ 0.59
XRCC3O43542 EIF5A-208ENST00000573542 1089 ntAPPRIS P1 TSL 2 BASIC18.72■□□□□ 0.59
XRCC3O43542 CAPNS1-211ENST00000590874 926 ntTSL 5 BASIC18.72■□□□□ 0.59
XRCC3O43542 SLAIN1-206ENST00000418532 2855 ntAPPRIS ALT2 TSL 5 BASIC18.72■□□□□ 0.59
XRCC3O43542 ACHE-203ENST00000411582 2179 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
XRCC3O43542 RHBDD2-201ENST00000006777 1802 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
XRCC3O43542 APPL2-201ENST00000258530 3239 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
XRCC3O43542 KRT18P55-201ENST00000577198 1950 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
XRCC3O43542 PRRT4-207ENST00000535159 2897 ntAPPRIS P1 TSL 5 BASIC18.71■□□□□ 0.59
XRCC3O43542 SERTAD3-201ENST00000322354 1734 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
XRCC3O43542 LINC01529-204ENST00000636474 1715 ntBASIC18.71■□□□□ 0.59
XRCC3O43542 R3HCC1-202ENST00000411463 1467 ntAPPRIS P5 TSL 5 BASIC18.71■□□□□ 0.59
XRCC3O43542 IRF3-207ENST00000593922 1494 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
XRCC3O43542 PRMT5-201ENST00000216350 2271 ntTSL 2 BASIC18.71■□□□□ 0.59
XRCC3O43542 KLHDC1-201ENST00000359332 2691 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
XRCC3O43542 TNFAIP8L3-202ENST00000637513 2002 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
XRCC3O43542 DENND4B-201ENST00000361217 5706 ntAPPRIS P2 TSL 1 (best) BASIC18.71■□□□□ 0.59
XRCC3O43542 TMEM161A-202ENST00000450333 1930 ntTSL 2 BASIC18.71■□□□□ 0.59
XRCC3O43542 CNPY3-202ENST00000394142 954 ntTSL 5 BASIC18.71■□□□□ 0.59
XRCC3O43542 AC068134.2-201ENST00000437095 576 ntTSL 3 BASIC18.71■□□□□ 0.59
XRCC3O43542 MTX2-204ENST00000443241 799 ntTSL 3 BASIC18.71■□□□□ 0.59
XRCC3O43542 AC104002.3-202ENST00000557170 1100 ntTSL 3 BASIC18.71■□□□□ 0.59
XRCC3O43542 FAM222B-205ENST00000577682 549 ntTSL 4 BASIC18.71■□□□□ 0.59
XRCC3O43542 R3HDM4-208ENST00000626716 138 ntTSL 5 BASIC18.71■□□□□ 0.59
XRCC3O43542 PHOX2B-201ENST00000226382 3030 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
XRCC3O43542 EEF1D-204ENST00000423316 2378 ntAPPRIS P4 TSL 5 BASIC18.71■□□□□ 0.59
XRCC3O43542 EDC4-201ENST00000358933 4800 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
XRCC3O43542 SP9-201ENST00000394967 2554 ntAPPRIS P1 TSL 5 BASIC18.71■□□□□ 0.59
XRCC3O43542 MAP7-206ENST00000611373 2317 ntAPPRIS ALT2 TSL 5 BASIC18.71■□□□□ 0.58
XRCC3O43542 ODF3L2-201ENST00000315489 1604 ntAPPRIS P2 TSL 1 (best) BASIC18.71■□□□□ 0.58
XRCC3O43542 MDFI-203ENST00000373051 1622 ntAPPRIS P1 TSL 5 BASIC18.71■□□□□ 0.58
XRCC3O43542 NOX4-209ENST00000527626 1774 ntTSL 2 BASIC18.7■□□□□ 0.58
XRCC3O43542 MEGF6-202ENST00000356575 5455 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
XRCC3O43542 HADH-201ENST00000309522 1912 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
XRCC3O43542 MAP3K3-201ENST00000361357 4818 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
XRCC3O43542 TMEM250-205ENST00000561457 2804 ntAPPRIS P1 TSL 2 BASIC18.7■□□□□ 0.58
XRCC3O43542 DNAAF4-201ENST00000321149 1993 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
XRCC3O43542 ZNF497-202ENST00000425453 2261 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
XRCC3O43542 MDK-206ENST00000407067 1026 ntAPPRIS P2 TSL 1 (best) BASIC18.7■□□□□ 0.58
XRCC3O43542 SMKR1-201ENST00000462322 1035 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
XRCC3O43542 GCH1-206ENST00000543643 1897 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
XRCC3O43542 PMS1-222ENST00000639501 2506 ntTSL 5 BASIC18.7■□□□□ 0.58
XRCC3O43542 GPR6-202ENST00000414000 1945 ntTSL 2 BASIC18.7■□□□□ 0.58
XRCC3O43542 CHN1-203ENST00000409156 1761 ntTSL 2 BASIC18.7■□□□□ 0.58
XRCC3O43542 COL15A1-205ENST00000610452 5422 ntAPPRIS ALT2 TSL 5 BASIC18.7■□□□□ 0.58
XRCC3O43542 CIZ1-203ENST00000357558 2907 ntAPPRIS ALT2 TSL 5 BASIC18.7■□□□□ 0.58
XRCC3O43542 KPTN-201ENST00000338134 1691 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
XRCC3O43542 WDR86-207ENST00000621812 1542 ntTSL 5 BASIC18.69■□□□□ 0.58
XRCC3O43542 GSPT1-203ENST00000439887 2509 ntAPPRIS ALT2 TSL 1 (best) BASIC18.69■□□□□ 0.58
XRCC3O43542 DENND2D-202ENST00000369752 1894 ntAPPRIS ALT2 TSL 2 BASIC18.69■□□□□ 0.58
XRCC3O43542 ZNF446-208ENST00000622313 1884 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
XRCC3O43542 DCK-201ENST00000286648 2716 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
XRCC3O43542 DHRS11-215ENST00000618403 1598 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
XRCC3O43542 TBC1D12-201ENST00000225235 5272 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
XRCC3O43542 DOK3-201ENST00000312943 2292 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
XRCC3O43542 RSPO4-202ENST00000400634 722 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
XRCC3O43542 MCRIP1-210ENST00000576431 577 ntTSL 5 BASIC18.69■□□□□ 0.58
XRCC3O43542 LSM7-203ENST00000585409 512 ntTSL 2 BASIC18.69■□□□□ 0.58
XRCC3O43542 ESR2-204ENST00000353772 2454 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
XRCC3O43542 TOP1MT-201ENST00000329245 1958 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
XRCC3O43542 CCDC88B-203ENST00000359902 2326 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
XRCC3O43542 AL391650.1-201ENST00000448923 1468 ntAPPRIS P1 TSL 2 BASIC18.69■□□□□ 0.58
XRCC3O43542 OBSL1-214ENST00000603926 5520 ntTSL 5 BASIC18.69■□□□□ 0.58
XRCC3O43542 PPP1R12B-202ENST00000356764 1687 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
XRCC3O43542 ABHD17B-202ENST00000377041 1312 ntAPPRIS P4 TSL 1 (best) BASIC18.69■□□□□ 0.58
XRCC3O43542 FP325331.1-202ENST00000623531 1380 ntBASIC18.68■□□□□ 0.58
Retrieved 100 of 98,524 protein–RNA pairs in 16.1 ms