Protein–RNA interactions for Protein: C9J1S8

TRIM49D1, Tripartite motif-containing protein 49D, humanhuman

Predictions only

Length 452 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM49D1C9J1S8 CACNA1H-202ENST00000358590 8069 ntAPPRIS ALT2 TSL 5 BASIC21.94■■□□□ 1.1
TRIM49D1C9J1S8 FNDC4-201ENST00000264703 1657 ntAPPRIS P1 TSL 1 (best) BASIC21.94■■□□□ 1.1
TRIM49D1C9J1S8 ZNF669-201ENST00000343381 1951 ntAPPRIS P3 TSL 1 (best) BASIC21.94■■□□□ 1.1
TRIM49D1C9J1S8 GRK3-203ENST00000619906 2873 ntTSL 5 BASIC21.93■■□□□ 1.1
TRIM49D1C9J1S8 C1QTNF4-201ENST00000302514 1664 ntAPPRIS P1 TSL 1 (best) BASIC21.93■■□□□ 1.1
TRIM49D1C9J1S8 MXRA8-201ENST00000309212 2273 ntAPPRIS P1 TSL 1 (best) BASIC21.93■■□□□ 1.1
TRIM49D1C9J1S8 HADH-201ENST00000309522 1912 ntAPPRIS P1 TSL 1 (best) BASIC21.93■■□□□ 1.1
TRIM49D1C9J1S8 RFLNA-202ENST00000338359 652 ntAPPRIS P2 TSL 1 (best) BASIC21.93■■□□□ 1.1
TRIM49D1C9J1S8 CBWD5-207ENST00000382405 1791 ntAPPRIS P1 TSL 1 (best) BASIC21.93■■□□□ 1.1
TRIM49D1C9J1S8 CTCF-202ENST00000401394 2978 ntTSL 1 (best) BASIC21.93■■□□□ 1.1
TRIM49D1C9J1S8 ST20-MTHFS-201ENST00000479961 859 ntAPPRIS P1 TSL 3 BASIC21.93■■□□□ 1.1
TRIM49D1C9J1S8 TRADD-202ENST00000486556 1833 ntTSL 2 BASIC21.93■■□□□ 1.1
TRIM49D1C9J1S8 AC053527.1-201ENST00000502790 685 ntTSL 3 BASIC21.93■■□□□ 1.1
TRIM49D1C9J1S8 IGFBP7-203ENST00000514062 1251 ntAPPRIS ALT2 TSL 2 BASIC21.93■■□□□ 1.1
TRIM49D1C9J1S8 KLC3-204ENST00000585434 1764 ntAPPRIS ALT1 TSL 1 (best) BASIC21.93■■□□□ 1.1
TRIM49D1C9J1S8 AL031848.2-201ENST00000607670 837 ntBASIC21.93■■□□□ 1.1
TRIM49D1C9J1S8 ANKS6-201ENST00000353234 7164 ntAPPRIS P1 TSL 1 (best) BASIC21.92■■□□□ 1.1
TRIM49D1C9J1S8 CHST7-201ENST00000276055 2289 ntAPPRIS P1 TSL 1 (best) BASIC21.92■■□□□ 1.1
TRIM49D1C9J1S8 NPY4R-201ENST00000374312 1956 ntAPPRIS P1 TSL 1 (best) BASIC21.92■■□□□ 1.1
TRIM49D1C9J1S8 NPY4R2-201ENST00000576178 1956 ntAPPRIS P1 TSL 1 (best) BASIC21.92■■□□□ 1.1
TRIM49D1C9J1S8 SPN-202ENST00000395389 1935 ntAPPRIS P2 TSL 1 (best) BASIC21.92■■□□□ 1.1
TRIM49D1C9J1S8 TMEM9B-201ENST00000309134 1659 ntTSL 1 (best) BASIC21.92■■□□□ 1.1
TRIM49D1C9J1S8 UBAP1L-203ENST00000559089 1694 ntAPPRIS P1 TSL 1 (best) BASIC21.92■■□□□ 1.1
TRIM49D1C9J1S8 RUFY1-201ENST00000319449 2646 ntAPPRIS P3 TSL 1 (best) BASIC21.92■■□□□ 1.1
TRIM49D1C9J1S8 OSCAR-206ENST00000391760 629 ntTSL 2 BASIC21.92■■□□□ 1.1
TRIM49D1C9J1S8 MAF-202ENST00000393350 6384 ntAPPRIS ALT2 BASIC21.92■■□□□ 1.1
TRIM49D1C9J1S8 LINC01770-201ENST00000417917 634 ntTSL 2 BASIC21.92■■□□□ 1.1
TRIM49D1C9J1S8 TMEM151B-202ENST00000451188 4895 ntAPPRIS P2 TSL 5 BASIC21.92■■□□□ 1.1
TRIM49D1C9J1S8 KIF12-207ENST00000640217 2194 ntAPPRIS P5 TSL 5 BASIC21.92■■□□□ 1.1
TRIM49D1C9J1S8 ZIM2-201ENST00000593711 2083 ntAPPRIS P1 TSL 1 (best) BASIC21.92■■□□□ 1.1
TRIM49D1C9J1S8 SLC41A3-202ENST00000346785 1705 ntTSL 2 BASIC21.92■■□□□ 1.1
TRIM49D1C9J1S8 CERS1-205ENST00000623927 2558 ntAPPRIS P1 TSL 1 (best) BASIC21.92■■□□□ 1.1
TRIM49D1C9J1S8 ZPBP2-201ENST00000348931 1543 ntAPPRIS P4 TSL 1 (best) BASIC21.91■■□□□ 1.1
TRIM49D1C9J1S8 AC138028.2-201ENST00000440406 1539 ntTSL 2 BASIC21.91■■□□□ 1.1
TRIM49D1C9J1S8 TATDN2-201ENST00000287652 5342 ntAPPRIS P1 TSL 1 (best) BASIC21.91■■□□□ 1.1
TRIM49D1C9J1S8 PABPC1L2A-201ENST00000373519 2237 ntAPPRIS P1 BASIC21.91■■□□□ 1.1
TRIM49D1C9J1S8 CCNG2-204ENST00000502280 1459 ntAPPRIS P1 TSL 2 BASIC21.91■■□□□ 1.1
TRIM49D1C9J1S8 SPIRE2-202ENST00000393062 2172 ntAPPRIS ALT2 TSL 1 (best) BASIC21.91■■□□□ 1.1
TRIM49D1C9J1S8 APLP1-203ENST00000586861 2052 ntTSL 2 BASIC21.91■■□□□ 1.1
TRIM49D1C9J1S8 RSPO1-201ENST00000356545 2621 ntAPPRIS P1 TSL 1 (best) BASIC21.91■■□□□ 1.1
TRIM49D1C9J1S8 AC090587.2-201ENST00000430222 527 ntTSL 2 BASIC21.91■■□□□ 1.1
TRIM49D1C9J1S8 AC009163.4-201ENST00000567194 530 ntAPPRIS P1 TSL 2 BASIC21.91■■□□□ 1.1
TRIM49D1C9J1S8 ZNF180-205ENST00000587047 525 ntTSL 4 BASIC21.91■■□□□ 1.1
TRIM49D1C9J1S8 FBXL19-205ENST00000562319 2462 ntAPPRIS ALT2 TSL 2 BASIC21.91■■□□□ 1.1
TRIM49D1C9J1S8 COL23A1-201ENST00000390654 3061 ntAPPRIS P2 TSL 5 BASIC21.91■■□□□ 1.1
TRIM49D1C9J1S8 DTWD2-203ENST00000510708 2307 ntAPPRIS P1 TSL 1 (best) BASIC21.91■■□□□ 1.1
TRIM49D1C9J1S8 PPP1R13B-201ENST00000202556 4958 ntAPPRIS P1 TSL 1 (best) BASIC21.91■■□□□ 1.1
TRIM49D1C9J1S8 AC096677.1-201ENST00000454651 1516 ntTSL 2 BASIC21.9■■□□□ 1.1
TRIM49D1C9J1S8 AC092490.1-203ENST00000514568 1972 ntTSL 1 (best) BASIC21.9■■□□□ 1.1
TRIM49D1C9J1S8 GPR6-202ENST00000414000 1945 ntTSL 2 BASIC21.9■■□□□ 1.1
TRIM49D1C9J1S8 FOSL1-202ENST00000448083 1427 ntTSL 2 BASIC21.9■■□□□ 1.1
TRIM49D1C9J1S8 AC021242.3-201ENST00000607598 1377 ntBASIC21.9■■□□□ 1.1
TRIM49D1C9J1S8 PMPCA-201ENST00000371717 2174 ntAPPRIS P1 TSL 1 (best) BASIC21.9■■□□□ 1.1
TRIM49D1C9J1S8 CLTA-206ENST00000466396 695 ntTSL 2 BASIC21.9■■□□□ 1.1
TRIM49D1C9J1S8 KIAA0895-204ENST00000415803 2865 ntTSL 1 (best) BASIC21.9■■□□□ 1.1
TRIM49D1C9J1S8 LRCH4-209ENST00000497245 2014 ntTSL 5 BASIC21.9■■□□□ 1.1
TRIM49D1C9J1S8 DRD2-202ENST00000362072 2789 ntAPPRIS P2 TSL 1 (best) BASIC21.9■■□□□ 1.1
TRIM49D1C9J1S8 UBA5-208ENST00000473651 1513 ntTSL 5 BASIC21.9■■□□□ 1.1
TRIM49D1C9J1S8 PDXK-205ENST00000398081 2251 ntTSL 2 BASIC21.9■■□□□ 1.1
TRIM49D1C9J1S8 EIF2B4-211ENST00000616081 1754 ntTSL 5 BASIC21.89■■□□□ 1.1
TRIM49D1C9J1S8 AL353743.1-201ENST00000637846 1769 ntTSL 5 BASIC21.89■■□□□ 1.1
TRIM49D1C9J1S8 GSN-204ENST00000373818 2657 ntTSL 1 (best) BASIC21.89■■□□□ 1.1
TRIM49D1C9J1S8 TFG-201ENST00000240851 1978 ntAPPRIS P3 TSL 1 (best) BASIC21.89■■□□□ 1.09
TRIM49D1C9J1S8 DACT1-204ENST00000541264 2610 ntAPPRIS ALT2 TSL 2 BASIC21.89■■□□□ 1.09
TRIM49D1C9J1S8 RNASEH2B-201ENST00000336617 1629 ntAPPRIS P1 TSL 1 (best) BASIC21.89■■□□□ 1.09
TRIM49D1C9J1S8 DAPK3-202ENST00000545797 2257 ntAPPRIS P1 TSL 2 BASIC21.89■■□□□ 1.09
TRIM49D1C9J1S8 AL355490.1-201ENST00000445808 805 ntTSL 3 BASIC21.89■■□□□ 1.09
TRIM49D1C9J1S8 STK11-205ENST00000586243 2777 ntAPPRIS ALT2 TSL 5 BASIC21.89■■□□□ 1.09
TRIM49D1C9J1S8 UBE2J2-201ENST00000347370 2387 ntTSL 3 BASIC21.89■■□□□ 1.09
TRIM49D1C9J1S8 MIR222HG-202ENST00000602507 1758 ntTSL 5 BASIC21.89■■□□□ 1.09
TRIM49D1C9J1S8 D2HGDH-201ENST00000321264 2617 ntAPPRIS P1 TSL 1 (best) BASIC21.89■■□□□ 1.09
TRIM49D1C9J1S8 AL024507.2-201ENST00000606070 2574 ntBASIC21.89■■□□□ 1.09
TRIM49D1C9J1S8 NAE1-204ENST00000394074 1654 ntTSL 5 BASIC21.88■■□□□ 1.09
TRIM49D1C9J1S8 AC004687.1-201ENST00000579003 1625 ntBASIC21.88■■□□□ 1.09
TRIM49D1C9J1S8 BOD1-202ENST00000311086 1562 ntAPPRIS P1 TSL 1 (best) BASIC21.88■■□□□ 1.09
TRIM49D1C9J1S8 AC092384.1-201ENST00000378347 1812 ntTSL 2 BASIC21.88■■□□□ 1.09
TRIM49D1C9J1S8 PWWP2A-205ENST00000523662 1819 ntTSL 1 (best) BASIC21.88■■□□□ 1.09
TRIM49D1C9J1S8 USP21-202ENST00000368001 2095 ntTSL 1 (best) BASIC21.88■■□□□ 1.09
TRIM49D1C9J1S8 MZT2B-201ENST00000281871 933 ntAPPRIS P3 TSL 1 (best) BASIC21.88■■□□□ 1.09
TRIM49D1C9J1S8 MZT2A-201ENST00000309451 624 ntAPPRIS P1 TSL 1 (best) BASIC21.88■■□□□ 1.09
TRIM49D1C9J1S8 CHAC1-201ENST00000444189 1204 ntTSL 1 (best) BASIC21.88■■□□□ 1.09
TRIM49D1C9J1S8 EFHD1-201ENST00000264059 2259 ntAPPRIS P1 TSL 1 (best) BASIC21.88■■□□□ 1.09
TRIM49D1C9J1S8 OAF-201ENST00000328965 2525 ntAPPRIS P2 TSL 1 (best) BASIC21.88■■□□□ 1.09
TRIM49D1C9J1S8 IRF3-207ENST00000593922 1494 ntTSL 1 (best) BASIC21.88■■□□□ 1.09
TRIM49D1C9J1S8 ARRB2-201ENST00000269260 1895 ntAPPRIS P1 TSL 1 (best) BASIC21.88■■□□□ 1.09
TRIM49D1C9J1S8 ARHGEF25-201ENST00000286494 2552 ntTSL 1 (best) BASIC21.88■■□□□ 1.09
TRIM49D1C9J1S8 HSD11B1L-203ENST00000342970 1620 ntTSL 1 (best) BASIC21.88■■□□□ 1.09
TRIM49D1C9J1S8 SH3RF3-AS1-201ENST00000567491 1604 ntBASIC21.88■■□□□ 1.09
TRIM49D1C9J1S8 SMURF1-201ENST00000361125 5737 ntTSL 1 (best) BASIC21.87■■□□□ 1.09
TRIM49D1C9J1S8 ZYG11B-202ENST00000545132 2294 ntTSL 2 BASIC21.87■■□□□ 1.09
TRIM49D1C9J1S8 FAM193B-217ENST00000514747 2913 ntAPPRIS P1 TSL 5 BASIC21.87■■□□□ 1.09
TRIM49D1C9J1S8 PPP4C-214ENST00000627746 1301 ntTSL 5 BASIC21.87■■□□□ 1.09
TRIM49D1C9J1S8 PPP3CC-201ENST00000240139 2189 ntAPPRIS P3 TSL 1 (best) BASIC21.87■■□□□ 1.09
TRIM49D1C9J1S8 TEAD2-201ENST00000311227 2164 ntAPPRIS P3 TSL 1 (best) BASIC21.87■■□□□ 1.09
TRIM49D1C9J1S8 SKI-201ENST00000378536 5613 ntAPPRIS P1 TSL 1 (best) BASIC21.87■■□□□ 1.09
TRIM49D1C9J1S8 FBXO25-203ENST00000352684 2360 ntTSL 5 BASIC21.87■■□□□ 1.09
TRIM49D1C9J1S8 PHF7-201ENST00000327906 2130 ntAPPRIS P1 TSL 1 (best) BASIC21.87■■□□□ 1.09
TRIM49D1C9J1S8 FBXO27-202ENST00000509137 2130 ntAPPRIS P2 TSL 1 (best) BASIC21.87■■□□□ 1.09
TRIM49D1C9J1S8 NKILA-201ENST00000613231 537 ntTSL 4 BASIC21.87■■□□□ 1.09
TRIM49D1C9J1S8 KPTN-201ENST00000338134 1691 ntAPPRIS P1 TSL 1 (best) BASIC21.87■■□□□ 1.09
Retrieved 100 of 98,524 protein–RNA pairs in 30.1 ms