Protein–RNA interactions for Protein: A0A087X0R7

SENP3-EIF4A1, SENP3-EIF4A1 readthrough (NMD candidate) (Fragment), humanhuman

Predictions only

Length 540 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SENP3-EIF4A1A0A087X0R7 SRPK3-202ENST00000370101 1958 ntAPPRIS P3 TSL 1 (best) BASIC29.44■■■□□ 2.3
SENP3-EIF4A1A0A087X0R7 NANOS2-201ENST00000341294 1657 ntAPPRIS P1 BASIC29.44■■■□□ 2.3
SENP3-EIF4A1A0A087X0R7 GRK3-203ENST00000619906 2873 ntTSL 5 BASIC29.43■■■□□ 2.3
SENP3-EIF4A1A0A087X0R7 DMRT1-201ENST00000382276 2222 ntAPPRIS P1 TSL 1 (best) BASIC29.43■■■□□ 2.3
SENP3-EIF4A1A0A087X0R7 SLC25A29-202ENST00000392908 2242 ntTSL 2 BASIC29.43■■■□□ 2.3
SENP3-EIF4A1A0A087X0R7 CCDC7-201ENST00000277657 1899 ntAPPRIS P2 TSL 1 (best) BASIC29.43■■■□□ 2.3
SENP3-EIF4A1A0A087X0R7 MANEAL-203ENST00000397631 2327 ntTSL 1 (best) BASIC29.43■■■□□ 2.3
SENP3-EIF4A1A0A087X0R7 SLC29A1-207ENST00000393841 2485 ntAPPRIS P1 TSL 2 BASIC29.43■■■□□ 2.3
SENP3-EIF4A1A0A087X0R7 IQCD-203ENST00000546692 1872 ntTSL 5 BASIC29.42■■■□□ 2.3
SENP3-EIF4A1A0A087X0R7 MOGS-202ENST00000409065 2668 ntTSL 5 BASIC29.42■■■□□ 2.3
SENP3-EIF4A1A0A087X0R7 SURF2-201ENST00000371964 842 ntAPPRIS P1 TSL 1 (best) BASIC29.42■■■□□ 2.3
SENP3-EIF4A1A0A087X0R7 GRAMD1B-217ENST00000640939 1212 ntTSL 5 BASIC29.42■■■□□ 2.3
SENP3-EIF4A1A0A087X0R7 CLN6-201ENST00000249806 2243 ntAPPRIS P1 TSL 1 (best) BASIC29.42■■■□□ 2.3
SENP3-EIF4A1A0A087X0R7 CCDC107-205ENST00000421582 1324 ntAPPRIS ALT2 TSL 2 BASIC29.42■■■□□ 2.3
SENP3-EIF4A1A0A087X0R7 DAZAP1-211ENST00000592522 2157 ntAPPRIS ALT1 TSL 5 BASIC29.42■■■□□ 2.3
SENP3-EIF4A1A0A087X0R7 SH3RF3-AS1-201ENST00000567491 1604 ntBASIC29.42■■■□□ 2.3
SENP3-EIF4A1A0A087X0R7 VGF-203ENST00000611537 1622 ntTSL 5 BASIC29.42■■■□□ 2.3
SENP3-EIF4A1A0A087X0R7 C1QTNF4-201ENST00000302514 1664 ntAPPRIS P1 TSL 1 (best) BASIC29.41■■■□□ 2.3
SENP3-EIF4A1A0A087X0R7 NAE1-204ENST00000394074 1654 ntTSL 5 BASIC29.41■■■□□ 2.3
SENP3-EIF4A1A0A087X0R7 NRL-203ENST00000397002 1976 ntAPPRIS P1 TSL 1 (best) BASIC29.41■■■□□ 2.3
SENP3-EIF4A1A0A087X0R7 FGF8-204ENST00000347978 823 ntTSL 1 (best) BASIC29.41■■■□□ 2.3
SENP3-EIF4A1A0A087X0R7 FUS-210ENST00000568685 1785 ntAPPRIS ALT2 TSL 5 BASIC29.41■■■□□ 2.3
SENP3-EIF4A1A0A087X0R7 HOXD4-201ENST00000306324 1464 ntAPPRIS P1 TSL 1 (best) BASIC29.41■■■□□ 2.3
SENP3-EIF4A1A0A087X0R7 AC080038.3-201ENST00000623346 1952 ntBASIC29.41■■■□□ 2.3
SENP3-EIF4A1A0A087X0R7 HAGHL-212ENST00000564537 1667 ntTSL 2 BASIC29.4■■■□□ 2.3
SENP3-EIF4A1A0A087X0R7 NRG3-201ENST00000372141 2158 ntAPPRIS P3 TSL 1 (best) BASIC29.4■■■□□ 2.3
SENP3-EIF4A1A0A087X0R7 AMER2-202ENST00000515384 3197 ntAPPRIS P1 BASIC29.4■■■□□ 2.3
SENP3-EIF4A1A0A087X0R7 TANGO2-210ENST00000432883 2084 ntTSL 2 BASIC29.4■■■□□ 2.3
SENP3-EIF4A1A0A087X0R7 ASPSCR1-208ENST00000580534 1776 ntTSL 2 BASIC29.4■■■□□ 2.3
SENP3-EIF4A1A0A087X0R7 C2orf82-201ENST00000331342 465 ntAPPRIS P2 TSL 1 (best) BASIC29.4■■■□□ 2.3
SENP3-EIF4A1A0A087X0R7 ABHD17AP1-201ENST00000358206 933 ntBASIC29.4■■■□□ 2.3
SENP3-EIF4A1A0A087X0R7 MOSPD3-203ENST00000393950 1191 ntAPPRIS P1 TSL 1 (best) BASIC29.4■■■□□ 2.3
SENP3-EIF4A1A0A087X0R7 GPSM1-204ENST00000429455 2057 ntTSL 3 BASIC29.4■■■□□ 2.3
SENP3-EIF4A1A0A087X0R7 SLC39A4-202ENST00000301305 2174 ntAPPRIS P1 TSL 1 (best) BASIC29.39■■■□□ 2.3
SENP3-EIF4A1A0A087X0R7 LEFTY1-201ENST00000272134 1626 ntAPPRIS P1 TSL 1 (best) BASIC29.39■■■□□ 2.3
SENP3-EIF4A1A0A087X0R7 SMCO4-201ENST00000298966 1104 ntAPPRIS P1 TSL 1 (best) BASIC29.39■■■□□ 2.3
SENP3-EIF4A1A0A087X0R7 UNC93B3-201ENST00000308076 687 ntBASIC29.39■■■□□ 2.3
SENP3-EIF4A1A0A087X0R7 STX10-202ENST00000343587 1128 ntTSL 1 (best) BASIC29.39■■■□□ 2.3
SENP3-EIF4A1A0A087X0R7 AL136162.1-201ENST00000607711 1078 ntBASIC29.39■■■□□ 2.3
SENP3-EIF4A1A0A087X0R7 AL355001.2-201ENST00000620617 1191 ntBASIC29.39■■■□□ 2.3
SENP3-EIF4A1A0A087X0R7 CDKN1C-202ENST00000414822 2051 ntAPPRIS P3 TSL 1 (best) BASIC29.39■■■□□ 2.3
SENP3-EIF4A1A0A087X0R7 P4HTM-201ENST00000343546 2268 ntTSL 1 (best) BASIC29.39■■■□□ 2.3
SENP3-EIF4A1A0A087X0R7 GUSBP5-202ENST00000510805 1989 ntBASIC29.39■■■□□ 2.29
SENP3-EIF4A1A0A087X0R7 ECHDC1-203ENST00000368291 1354 ntTSL 2 BASIC29.39■■■□□ 2.29
SENP3-EIF4A1A0A087X0R7 DBP-201ENST00000222122 2229 ntAPPRIS P1 TSL 1 (best) BASIC29.39■■■□□ 2.29
SENP3-EIF4A1A0A087X0R7 ANKHD1-221ENST00000616482 2064 ntTSL 1 (best) BASIC29.38■■■□□ 2.29
SENP3-EIF4A1A0A087X0R7 GCA-201ENST00000233612 1694 ntTSL 2 BASIC29.38■■■□□ 2.29
SENP3-EIF4A1A0A087X0R7 B3GALT4-204ENST00000451237 1694 ntAPPRIS P1 BASIC29.38■■■□□ 2.29
SENP3-EIF4A1A0A087X0R7 IGSF21-201ENST00000251296 1943 ntAPPRIS P1 TSL 1 (best) BASIC29.38■■■□□ 2.29
SENP3-EIF4A1A0A087X0R7 CD47-202ENST00000361309 1285 ntTSL 1 (best) BASIC29.38■■■□□ 2.29
SENP3-EIF4A1A0A087X0R7 CEP104-201ENST00000378223 1121 ntTSL 1 (best) BASIC29.38■■■□□ 2.29
SENP3-EIF4A1A0A087X0R7 OIP5-AS1-208ENST00000560706 473 ntTSL 5 BASIC29.38■■■□□ 2.29
SENP3-EIF4A1A0A087X0R7 ANAPC11-219ENST00000583839 499 ntAPPRIS P1 TSL 2 BASIC29.38■■■□□ 2.29
SENP3-EIF4A1A0A087X0R7 AC010336.5-201ENST00000594308 317 ntTSL 3 BASIC29.38■■■□□ 2.29
SENP3-EIF4A1A0A087X0R7 AC092902.2-206ENST00000625484 846 ntTSL 5 BASIC29.38■■■□□ 2.29
SENP3-EIF4A1A0A087X0R7 NPY4R-201ENST00000374312 1956 ntAPPRIS P1 TSL 1 (best) BASIC29.38■■■□□ 2.29
SENP3-EIF4A1A0A087X0R7 NPY4R2-201ENST00000576178 1956 ntAPPRIS P1 TSL 1 (best) BASIC29.38■■■□□ 2.29
SENP3-EIF4A1A0A087X0R7 USP12-201ENST00000282344 4511 ntAPPRIS P1 TSL 1 (best) BASIC29.38■■■□□ 2.29
SENP3-EIF4A1A0A087X0R7 TSPAN17-207ENST00000508164 2457 ntTSL 1 (best) BASIC29.37■■■□□ 2.29
SENP3-EIF4A1A0A087X0R7 CXCL14-201ENST00000337225 1971 ntAPPRIS P2 TSL 1 (best) BASIC29.37■■■□□ 2.29
SENP3-EIF4A1A0A087X0R7 CREG1-201ENST00000370509 1974 ntAPPRIS P1 TSL 1 (best) BASIC29.37■■■□□ 2.29
SENP3-EIF4A1A0A087X0R7 TMEM159-201ENST00000233047 2014 ntAPPRIS P1 TSL 1 (best) BASIC29.37■■■□□ 2.29
SENP3-EIF4A1A0A087X0R7 ANKHD1-204ENST00000394722 2035 ntTSL 1 (best) BASIC29.37■■■□□ 2.29
SENP3-EIF4A1A0A087X0R7 ACAD8-202ENST00000374752 1797 ntTSL 2 BASIC29.37■■■□□ 2.29
SENP3-EIF4A1A0A087X0R7 SMOX-212ENST00000621355 2322 ntTSL 1 (best) BASIC29.37■■■□□ 2.29
SENP3-EIF4A1A0A087X0R7 MYB-221ENST00000527615 2381 ntTSL 5 BASIC29.37■■■□□ 2.29
SENP3-EIF4A1A0A087X0R7 PRELID2-201ENST00000334744 2140 ntTSL 2 BASIC29.37■■■□□ 2.29
SENP3-EIF4A1A0A087X0R7 LINC01632-201ENST00000615763 496 ntTSL 3 BASIC29.37■■■□□ 2.29
SENP3-EIF4A1A0A087X0R7 HAUS3-202ENST00000443786 2430 ntAPPRIS P1 TSL 1 (best) BASIC29.37■■■□□ 2.29
SENP3-EIF4A1A0A087X0R7 SPPL2B-211ENST00000614794 1559 ntTSL 1 (best) BASIC29.37■■■□□ 2.29
SENP3-EIF4A1A0A087X0R7 ZDHHC16-203ENST00000353979 1647 ntTSL 1 (best) BASIC29.37■■■□□ 2.29
SENP3-EIF4A1A0A087X0R7 PRKAR1B-211ENST00000537384 2533 ntAPPRIS P1 TSL 5 BASIC29.37■■■□□ 2.29
SENP3-EIF4A1A0A087X0R7 WRAP73-201ENST00000270708 1665 ntAPPRIS P1 TSL 1 (best) BASIC29.37■■■□□ 2.29
SENP3-EIF4A1A0A087X0R7 DDN-AS1-202ENST00000547866 2114 ntTSL 3 BASIC29.36■■■□□ 2.29
SENP3-EIF4A1A0A087X0R7 GTSE1-AS1-202ENST00000623117 1518 ntBASIC29.36■■■□□ 2.29
SENP3-EIF4A1A0A087X0R7 ANXA8-204ENST00000583911 1874 ntTSL 2 BASIC29.36■■■□□ 2.29
SENP3-EIF4A1A0A087X0R7 KAT5-201ENST00000341318 2296 ntTSL 1 (best) BASIC29.36■■■□□ 2.29
SENP3-EIF4A1A0A087X0R7 FAM19A5-202ENST00000358295 2638 ntAPPRIS P1 TSL 2 BASIC29.36■■■□□ 2.29
SENP3-EIF4A1A0A087X0R7 AL117328.2-201ENST00000624617 1940 ntBASIC29.36■■■□□ 2.29
SENP3-EIF4A1A0A087X0R7 DYRK1B-204ENST00000593685 2724 ntAPPRIS P3 TSL 5 BASIC29.36■■■□□ 2.29
SENP3-EIF4A1A0A087X0R7 EDA-201ENST00000338901 1233 ntBASIC29.36■■■□□ 2.29
SENP3-EIF4A1A0A087X0R7 YJEFN3-201ENST00000436027 878 ntAPPRIS P1 TSL 1 (best) BASIC29.36■■■□□ 2.29
SENP3-EIF4A1A0A087X0R7 CCDC189-211ENST00000545825 1046 ntTSL 1 (best) BASIC29.36■■■□□ 2.29
SENP3-EIF4A1A0A087X0R7 AC066615.1-201ENST00000640911 628 ntBASIC29.36■■■□□ 2.29
SENP3-EIF4A1A0A087X0R7 TMEM64-203ENST00000458549 4997 ntAPPRIS P1 TSL 1 (best) BASIC29.36■■■□□ 2.29
SENP3-EIF4A1A0A087X0R7 STK19-201ENST00000375331 1663 ntAPPRIS ALT2 TSL 1 (best) BASIC29.36■■■□□ 2.29
SENP3-EIF4A1A0A087X0R7 CTCF-202ENST00000401394 2978 ntTSL 1 (best) BASIC29.36■■■□□ 2.29
SENP3-EIF4A1A0A087X0R7 ST3GAL4-213ENST00000530591 1459 ntAPPRIS P3 TSL 1 (best) BASIC29.36■■■□□ 2.29
SENP3-EIF4A1A0A087X0R7 ASCC1-204ENST00000394915 1510 ntTSL 5 BASIC29.35■■■□□ 2.29
SENP3-EIF4A1A0A087X0R7 EN1-201ENST00000295206 2457 ntAPPRIS P1 TSL 2 BASIC29.35■■■□□ 2.29
SENP3-EIF4A1A0A087X0R7 SYT8-201ENST00000341958 1556 ntAPPRIS ALT2 TSL 5 BASIC29.35■■■□□ 2.29
SENP3-EIF4A1A0A087X0R7 LTK-202ENST00000355166 2940 ntAPPRIS ALT2 TSL 1 (best) BASIC29.35■■■□□ 2.29
SENP3-EIF4A1A0A087X0R7 ABCG4-204ENST00000615496 2459 ntAPPRIS P1 TSL 2 BASIC29.35■■■□□ 2.29
SENP3-EIF4A1A0A087X0R7 AP002761.3-201ENST00000546324 1695 ntTSL 2 BASIC29.35■■■□□ 2.29
SENP3-EIF4A1A0A087X0R7 AC113189.4-201ENST00000575331 5553 ntTSL 1 (best) BASIC29.35■■■□□ 2.29
SENP3-EIF4A1A0A087X0R7 STOML2-201ENST00000356493 1278 ntAPPRIS P1 TSL 1 (best) BASIC29.35■■■□□ 2.29
SENP3-EIF4A1A0A087X0R7 AC022517.1-201ENST00000592429 346 ntBASIC29.35■■■□□ 2.29
SENP3-EIF4A1A0A087X0R7 LSM14B-201ENST00000279068 2548 ntAPPRIS P1 TSL 5 BASIC29.35■■■□□ 2.29
SENP3-EIF4A1A0A087X0R7 RNF39-202ENST00000376751 1970 ntTSL 1 (best) BASIC29.35■■■□□ 2.29
SENP3-EIF4A1A0A087X0R7 NAPRT-204ENST00000449291 1965 ntAPPRIS P1 TSL 1 (best) BASIC29.35■■■□□ 2.29
Retrieved 100 of 98,524 protein–RNA pairs in 88.8 ms