Protein–RNA interactions for Protein: Q9Y566

SHANK1, SH3 and multiple ankyrin repeat domains protein 1, humanhuman

Predictions only

Length 2,161 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHANK1Q9Y566 AC105219.1-201ENST00000531565 1963 ntTSL 1 (best) BASIC19.98■□□□□ 0.79
SHANK1Q9Y566 LINC02043-201ENST00000419745 1832 ntTSL 2 BASIC19.98■□□□□ 0.79
SHANK1Q9Y566 FJX1-201ENST00000317811 2450 ntAPPRIS P1 BASIC19.98■□□□□ 0.79
SHANK1Q9Y566 SLC22A18-201ENST00000312221 1628 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
SHANK1Q9Y566 IRX4-202ENST00000505790 2538 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
SHANK1Q9Y566 PTH1R-201ENST00000313049 2123 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
SHANK1Q9Y566 LEF1-AS1-207ENST00000512637 1675 ntTSL 1 (best) BASIC19.97■□□□□ 0.79
SHANK1Q9Y566 PRDM13-202ENST00000369215 2429 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
SHANK1Q9Y566 EMC7-201ENST00000256545 1155 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
SHANK1Q9Y566 POLR3GL-201ENST00000369313 818 ntTSL 2 BASIC19.97■□□□□ 0.79
SHANK1Q9Y566 AC142086.2-201ENST00000569753 217 ntBASIC19.97■□□□□ 0.79
SHANK1Q9Y566 SEPT4-215ENST00000580809 952 ntTSL 1 (best) BASIC19.97■□□□□ 0.79
SHANK1Q9Y566 ARHGEF7-205ENST00000375739 5375 ntTSL 1 (best) BASIC19.97■□□□□ 0.79
SHANK1Q9Y566 PRR35-201ENST00000409413 2216 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
SHANK1Q9Y566 FOXG1-201ENST00000313071 4890 ntAPPRIS P1 BASIC19.97■□□□□ 0.79
SHANK1Q9Y566 AC011511.3-201ENST00000587088 355 ntTSL 2 BASIC19.97■□□□□ 0.79
SHANK1Q9Y566 FIZ1-205ENST00000592585 489 ntTSL 5 BASIC19.97■□□□□ 0.79
SHANK1Q9Y566 ATAD3B-201ENST00000308647 2448 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
SHANK1Q9Y566 C1QL2-201ENST00000272520 2043 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
SHANK1Q9Y566 ANO8-204ENST00000630631 1905 ntTSL 5 BASIC19.96■□□□□ 0.79
SHANK1Q9Y566 ZNF451-202ENST00000370702 458 ntTSL 2 BASIC19.96■□□□□ 0.79
SHANK1Q9Y566 CDH18-AS1-201ENST00000513573 424 ntTSL 2 BASIC19.96■□□□□ 0.79
SHANK1Q9Y566 SMOX-202ENST00000305958 2233 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
SHANK1Q9Y566 GATA1-202ENST00000376670 1497 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
SHANK1Q9Y566 P4HA3-201ENST00000331597 2274 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
SHANK1Q9Y566 SLC35A2-210ENST00000616181 1614 ntTSL 2 BASIC19.96■□□□□ 0.79
SHANK1Q9Y566 UBE2J2-203ENST00000360466 1047 ntAPPRIS P1 TSL 2 BASIC19.95■□□□□ 0.78
SHANK1Q9Y566 MDK-204ENST00000395569 686 ntTSL 1 (best) BASIC19.95■□□□□ 0.78
SHANK1Q9Y566 PIGP-203ENST00000399098 972 ntTSL 1 (best) BASIC19.95■□□□□ 0.78
SHANK1Q9Y566 RELL2-205ENST00000518856 1419 ntTSL 5 BASIC19.95■□□□□ 0.78
SHANK1Q9Y566 PSIP1-202ENST00000380716 1889 ntTSL 5 BASIC19.95■□□□□ 0.78
SHANK1Q9Y566 BMP2K-204ENST00000502871 3195 ntAPPRIS P3 TSL 1 (best) BASIC19.95■□□□□ 0.78
SHANK1Q9Y566 AC142381.3-201ENST00000568208 1670 ntBASIC19.95■□□□□ 0.78
SHANK1Q9Y566 NUDT14-202ENST00000392568 845 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
SHANK1Q9Y566 C12orf75-205ENST00000549893 719 ntTSL 3 BASIC19.95■□□□□ 0.78
SHANK1Q9Y566 AC092368.3-201ENST00000562549 1107 ntTSL 5 BASIC19.95■□□□□ 0.78
SHANK1Q9Y566 AC012313.6-201ENST00000599889 790 ntTSL 3 BASIC19.95■□□□□ 0.78
SHANK1Q9Y566 POU5F1-209ENST00000638788 369 ntTSL 5 BASIC19.95■□□□□ 0.78
SHANK1Q9Y566 RNASEH2B-201ENST00000336617 1629 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
SHANK1Q9Y566 DCAF4-206ENST00000509153 1521 ntAPPRIS ALT2 TSL 2 BASIC19.95■□□□□ 0.78
SHANK1Q9Y566 ZDHHC14-204ENST00000414563 3134 ntTSL 1 (best) BASIC19.95■□□□□ 0.78
SHANK1Q9Y566 XBP1-201ENST00000216037 1850 ntAPPRIS P2 TSL 1 (best) BASIC19.94■□□□□ 0.78
SHANK1Q9Y566 HAGH-201ENST00000397353 1257 ntAPPRIS ALT1 TSL 5 BASIC19.94■□□□□ 0.78
SHANK1Q9Y566 AL645608.9-201ENST00000442292 829 ntTSL 1 (best) BASIC19.94■□□□□ 0.78
SHANK1Q9Y566 UCHL5-201ENST00000367448 1534 ntTSL 1 (best) BASIC19.94■□□□□ 0.78
SHANK1Q9Y566 ARRB2-210ENST00000572457 1660 ntTSL 5 BASIC19.94■□□□□ 0.78
SHANK1Q9Y566 AP2M1-202ENST00000382456 2091 ntAPPRIS ALT1 TSL 1 (best) BASIC19.94■□□□□ 0.78
SHANK1Q9Y566 ZC3H14-223ENST00000557607 1983 ntTSL 5 BASIC19.94■□□□□ 0.78
SHANK1Q9Y566 UBTD1-201ENST00000370664 1706 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
SHANK1Q9Y566 LAYN-209ENST00000533265 1703 ntTSL 5 BASIC19.94■□□□□ 0.78
SHANK1Q9Y566 KRT10-201ENST00000269576 2124 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
SHANK1Q9Y566 ZNF767P-202ENST00000472212 2100 ntTSL 1 (best) BASIC19.94■□□□□ 0.78
SHANK1Q9Y566 NIPSNAP2-205ENST00000446778 1882 ntTSL 2 BASIC19.94■□□□□ 0.78
SHANK1Q9Y566 ARRDC2-202ENST00000379656 2528 ntTSL 2 BASIC19.94■□□□□ 0.78
SHANK1Q9Y566 OAZ2-201ENST00000326005 1934 ntAPPRIS P1 TSL 5 BASIC19.94■□□□□ 0.78
SHANK1Q9Y566 CTBP1-203ENST00000382952 2467 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
SHANK1Q9Y566 NAE1-204ENST00000394074 1654 ntTSL 5 BASIC19.94■□□□□ 0.78
SHANK1Q9Y566 AP002761.3-201ENST00000546324 1695 ntTSL 2 BASIC19.94■□□□□ 0.78
SHANK1Q9Y566 PHPT1-201ENST00000247665 890 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
SHANK1Q9Y566 UBE2C-203ENST00000352551 665 ntTSL 2 BASIC19.94■□□□□ 0.78
SHANK1Q9Y566 MLLT10-204ENST00000377091 905 ntTSL 1 (best) BASIC19.94■□□□□ 0.78
SHANK1Q9Y566 CCDC74B-203ENST00000409128 789 ntAPPRIS ALT2 TSL 2 BASIC19.94■□□□□ 0.78
SHANK1Q9Y566 AC092143.4-201ENST00000570217 559 ntTSL 4 BASIC19.94■□□□□ 0.78
SHANK1Q9Y566 TRAPPC5-203ENST00000595985 411 ntTSL 3 BASIC19.94■□□□□ 0.78
SHANK1Q9Y566 TMEM191A-211ENST00000637163 1067 ntBASIC19.94■□□□□ 0.78
SHANK1Q9Y566 CAPN10-207ENST00000391984 2644 ntAPPRIS P2 TSL 1 (best) BASIC19.94■□□□□ 0.78
SHANK1Q9Y566 SHD-204ENST00000599689 1729 ntTSL 5 BASIC19.94■□□□□ 0.78
SHANK1Q9Y566 NR2F6-201ENST00000291442 2404 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
SHANK1Q9Y566 ZNF205-202ENST00000382192 2062 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
SHANK1Q9Y566 MMD-201ENST00000262065 2735 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
SHANK1Q9Y566 LIN7B-201ENST00000221459 755 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
SHANK1Q9Y566 APTR-205ENST00000447009 902 ntTSL 2 BASIC19.93■□□□□ 0.78
SHANK1Q9Y566 C4orf19-202ENST00000381980 1943 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
SHANK1Q9Y566 WT1-210ENST00000639563 1494 ntAPPRIS ALT2 TSL 1 (best) BASIC19.93■□□□□ 0.78
SHANK1Q9Y566 ERI3-201ENST00000372257 1684 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
SHANK1Q9Y566 CCDC151-202ENST00000586836 1867 ntTSL 2 BASIC19.93■□□□□ 0.78
SHANK1Q9Y566 GATA3-AS1-201ENST00000355358 2214 ntTSL 2 BASIC19.93■□□□□ 0.78
SHANK1Q9Y566 TMEM54-202ENST00000373463 999 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
SHANK1Q9Y566 AC061979.1-201ENST00000532061 434 ntTSL 5 BASIC19.93■□□□□ 0.78
SHANK1Q9Y566 TMEM202-AS1-202ENST00000565181 2325 ntBASIC19.92■□□□□ 0.78
SHANK1Q9Y566 LINC01578-209ENST00000557682 2683 ntTSL 2 BASIC19.92■□□□□ 0.78
SHANK1Q9Y566 TSEN34-201ENST00000302937 2294 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
SHANK1Q9Y566 RNPEP-202ENST00000367286 2282 ntTSL 5 BASIC19.92■□□□□ 0.78
SHANK1Q9Y566 AARD-201ENST00000378279 2299 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
SHANK1Q9Y566 STK19-202ENST00000375333 1557 ntAPPRIS P3 TSL 1 (best) BASIC19.92■□□□□ 0.78
SHANK1Q9Y566 ID4-201ENST00000378700 2344 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
SHANK1Q9Y566 RARA-203ENST00000394086 2008 ntTSL 2 BASIC19.92■□□□□ 0.78
SHANK1Q9Y566 GPX1P1-201ENST00000388829 606 ntBASIC19.92■□□□□ 0.78
SHANK1Q9Y566 VGLL4-208ENST00000424529 1025 ntTSL 1 (best) BASIC19.92■□□□□ 0.78
SHANK1Q9Y566 RPS15-210ENST00000592623 873 ntTSL 1 (best) BASIC19.92■□□□□ 0.78
SHANK1Q9Y566 GBX2-201ENST00000306318 2123 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
SHANK1Q9Y566 FAHD1-203ENST00000427358 1974 ntAPPRIS P1 BASIC19.92■□□□□ 0.78
SHANK1Q9Y566 SH2D3A-202ENST00000437152 2013 ntTSL 2 BASIC19.92■□□□□ 0.78
SHANK1Q9Y566 STX4-202ENST00000394998 1498 ntTSL 2 BASIC19.91■□□□□ 0.78
SHANK1Q9Y566 COMT-206ENST00000407537 1457 ntAPPRIS P3 TSL 5 BASIC19.91■□□□□ 0.78
SHANK1Q9Y566 FITM1-201ENST00000267426 1194 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
SHANK1Q9Y566 HSD17B14-204ENST00000599157 991 ntTSL 3 BASIC19.91■□□□□ 0.78
SHANK1Q9Y566 FAM167A-204ENST00000528897 1620 ntAPPRIS P1 TSL 2 BASIC19.91■□□□□ 0.78
SHANK1Q9Y566 SLC22A15-201ENST00000369502 1230 ntTSL 2 BASIC19.91■□□□□ 0.78
SHANK1Q9Y566 CHPF-202ENST00000373891 1079 ntTSL 2 BASIC19.91■□□□□ 0.78
Retrieved 100 of 98,524 protein–RNA pairs in 39.4 ms