Protein–RNA interactions for Protein: Q9UND3

NPIPA1, Nuclear pore complex-interacting protein family member A1, humanhuman

Predictions only

Length 350 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPIPA1Q9UND3 THRA-209ENST00000584985 2421 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
NPIPA1Q9UND3 NDUFV2-201ENST00000318388 930 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
NPIPA1Q9UND3 BCAP29-209ENST00000465919 942 ntTSL 2 BASIC20.21■□□□□ 0.83
NPIPA1Q9UND3 PYCARD-AS1-201ENST00000561916 1095 ntTSL 2 BASIC20.21■□□□□ 0.83
NPIPA1Q9UND3 IRF3-201ENST00000309877 1691 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
NPIPA1Q9UND3 SLC22A17-201ENST00000206544 2284 ntAPPRIS P4 TSL 1 (best) BASIC20.21■□□□□ 0.83
NPIPA1Q9UND3 DACT3-201ENST00000300875 2526 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
NPIPA1Q9UND3 MTMR14-202ENST00000351233 2105 ntAPPRIS ALT2 TSL 1 (best) BASIC20.21■□□□□ 0.83
NPIPA1Q9UND3 CACTIN-AS1-201ENST00000592274 1913 ntTSL 2 BASIC20.21■□□□□ 0.83
NPIPA1Q9UND3 GDI1-204ENST00000447750 2474 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
NPIPA1Q9UND3 MTURN-201ENST00000324453 5937 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
NPIPA1Q9UND3 C21orf2-203ENST00000397956 1634 ntAPPRIS ALT2 TSL 1 (best) BASIC20.2■□□□□ 0.82
NPIPA1Q9UND3 SESN3-202ENST00000416495 1408 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
NPIPA1Q9UND3 ERMP1-202ENST00000339450 5376 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
NPIPA1Q9UND3 AC092068.2-201ENST00000590491 1708 ntBASIC20.2■□□□□ 0.82
NPIPA1Q9UND3 CCDC28B-201ENST00000373602 1089 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
NPIPA1Q9UND3 LINC01678-201ENST00000411694 863 ntTSL 5 BASIC20.2■□□□□ 0.82
NPIPA1Q9UND3 AL138963.3-201ENST00000610057 588 ntTSL 4 BASIC20.2■□□□□ 0.82
NPIPA1Q9UND3 SNUPN-201ENST00000308588 1513 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
NPIPA1Q9UND3 PLPP1-201ENST00000264775 1550 ntAPPRIS P4 TSL 1 (best) BASIC20.2■□□□□ 0.82
NPIPA1Q9UND3 DLL3-201ENST00000205143 2332 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
NPIPA1Q9UND3 BTBD7-205ENST00000554565 2697 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
NPIPA1Q9UND3 ZSCAN18-212ENST00000600404 1934 ntAPPRIS ALT2 TSL 2 BASIC20.19■□□□□ 0.82
NPIPA1Q9UND3 SPAG7-205ENST00000573366 1668 ntTSL 3 BASIC20.19■□□□□ 0.82
NPIPA1Q9UND3 REXO1-201ENST00000170168 4591 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
NPIPA1Q9UND3 TNFRSF10B-202ENST00000347739 1723 ntAPPRIS ALT2 TSL 1 (best) BASIC20.19■□□□□ 0.82
NPIPA1Q9UND3 PXK-202ENST00000356151 2037 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
NPIPA1Q9UND3 FAM86JP-203ENST00000485843 2012 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
NPIPA1Q9UND3 SAP30L-201ENST00000297109 6226 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
NPIPA1Q9UND3 IPO9-AS1-201ENST00000413035 839 ntTSL 3 BASIC20.19■□□□□ 0.82
NPIPA1Q9UND3 LINC01167-201ENST00000423232 604 ntTSL 3 BASIC20.19■□□□□ 0.82
NPIPA1Q9UND3 IGHV3-19-201ENST00000521488 291 ntBASIC20.19■□□□□ 0.82
NPIPA1Q9UND3 AC005775.1-201ENST00000592413 850 ntTSL 5 BASIC20.19■□□□□ 0.82
NPIPA1Q9UND3 AL499627.2-201ENST00000606283 725 ntBASIC20.19■□□□□ 0.82
NPIPA1Q9UND3 IQCJ-SCHIP1-202ENST00000460298 1884 ntAPPRIS ALT2 TSL 1 (best) BASIC20.19■□□□□ 0.82
NPIPA1Q9UND3 NMI-201ENST00000243346 1623 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
NPIPA1Q9UND3 ZNF213-208ENST00000576416 2240 ntAPPRIS P1 TSL 2 BASIC20.19■□□□□ 0.82
NPIPA1Q9UND3 FP325331.1-202ENST00000623531 1380 ntBASIC20.19■□□□□ 0.82
NPIPA1Q9UND3 DOHH-201ENST00000427575 2031 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
NPIPA1Q9UND3 LTK-203ENST00000453182 2412 ntTSL 2 BASIC20.18■□□□□ 0.82
NPIPA1Q9UND3 GFRA3-202ENST00000378362 1837 ntAPPRIS ALT2 TSL 1 (best) BASIC20.18■□□□□ 0.82
NPIPA1Q9UND3 KCNIP2-206ENST00000356640 1989 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
NPIPA1Q9UND3 POU2F3-206ENST00000543440 1953 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
NPIPA1Q9UND3 CCDC115-202ENST00000409127 1247 ntTSL 2 BASIC20.18■□□□□ 0.82
NPIPA1Q9UND3 SHMT1-203ENST00000354098 1656 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
NPIPA1Q9UND3 CDX1-201ENST00000231656 1758 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
NPIPA1Q9UND3 ACAD8-202ENST00000374752 1797 ntTSL 2 BASIC20.18■□□□□ 0.82
NPIPA1Q9UND3 PCDH1-204ENST00000503492 2373 ntTSL 5 BASIC20.17■□□□□ 0.82
NPIPA1Q9UND3 NRXN2-205ENST00000409571 6381 ntAPPRIS ALT2 TSL 5 BASIC20.17■□□□□ 0.82
NPIPA1Q9UND3 KCNN1-204ENST00000615435 1691 ntAPPRIS ALT1 TSL 5 BASIC20.17■□□□□ 0.82
NPIPA1Q9UND3 C7orf26-202ENST00000359073 1762 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
NPIPA1Q9UND3 CLYBL-202ENST00000376354 1127 ntTSL 5 BASIC20.17■□□□□ 0.82
NPIPA1Q9UND3 NMRAL1-202ENST00000404295 1233 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
NPIPA1Q9UND3 NDUFAF8-201ENST00000431388 615 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
NPIPA1Q9UND3 AC034268.1-201ENST00000441047 882 ntBASIC20.17■□□□□ 0.82
NPIPA1Q9UND3 FRMD8-208ENST00000531296 366 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
NPIPA1Q9UND3 TUNAR-203ENST00000554321 767 ntAPPRIS P1 TSL 4 BASIC20.17■□□□□ 0.82
NPIPA1Q9UND3 AC010525.1-201ENST00000585559 441 ntBASIC20.17■□□□□ 0.82
NPIPA1Q9UND3 HYAL2-207ENST00000442581 2318 ntAPPRIS P1 TSL 2 BASIC20.17■□□□□ 0.82
NPIPA1Q9UND3 CDC16-206ENST00000375310 2156 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
NPIPA1Q9UND3 NAE1-204ENST00000394074 1654 ntTSL 5 BASIC20.16■□□□□ 0.82
NPIPA1Q9UND3 ATP5G2-201ENST00000338662 1792 ntTSL 2 BASIC20.16■□□□□ 0.82
NPIPA1Q9UND3 AL121749.1-201ENST00000635993 1768 ntTSL 5 BASIC20.16■□□□□ 0.82
NPIPA1Q9UND3 PITX2-209ENST00000557119 1889 ntTSL 2 BASIC20.16■□□□□ 0.82
NPIPA1Q9UND3 SRXN1-201ENST00000381962 2698 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
NPIPA1Q9UND3 H19-210ENST00000439725 1929 ntTSL 2 BASIC20.16■□□□□ 0.82
NPIPA1Q9UND3 PRDX4-202ENST00000379341 1005 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
NPIPA1Q9UND3 GDNF-203ENST00000381826 778 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
NPIPA1Q9UND3 GDNF-204ENST00000427982 856 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
NPIPA1Q9UND3 NEBL-AS1-202ENST00000439097 661 ntTSL 2 BASIC20.16■□□□□ 0.82
NPIPA1Q9UND3 YBX1P1-201ENST00000445822 960 ntBASIC20.16■□□□□ 0.82
NPIPA1Q9UND3 ZFYVE28-207ENST00000509171 1135 ntTSL 2 BASIC20.16■□□□□ 0.82
NPIPA1Q9UND3 SSPN-204ENST00000535504 419 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
NPIPA1Q9UND3 AP003419.1-201ENST00000535922 470 ntTSL 3 BASIC20.16■□□□□ 0.82
NPIPA1Q9UND3 DUX4L4-201ENST00000566884 1269 ntBASIC20.16■□□□□ 0.82
NPIPA1Q9UND3 HOMER3-206ENST00000594439 982 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
NPIPA1Q9UND3 FZD8-201ENST00000374694 4030 ntAPPRIS P1 BASIC20.16■□□□□ 0.82
NPIPA1Q9UND3 KRTAP5-7-201ENST00000398536 1408 ntAPPRIS P1 BASIC20.16■□□□□ 0.82
NPIPA1Q9UND3 RANBP10-206ENST00000602677 2374 ntTSL 5 BASIC20.16■□□□□ 0.82
NPIPA1Q9UND3 NUDT18-201ENST00000611621 1497 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
NPIPA1Q9UND3 ACP1-201ENST00000272065 1549 ntAPPRIS P5 TSL 1 (best) BASIC20.16■□□□□ 0.82
NPIPA1Q9UND3 POLD2-218ENST00000610533 1619 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
NPIPA1Q9UND3 SAMD8-202ENST00000372690 1654 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
NPIPA1Q9UND3 ANKRD53-204ENST00000457410 1671 ntTSL 5 BASIC20.16■□□□□ 0.82
NPIPA1Q9UND3 ROGDI-201ENST00000322048 1735 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
NPIPA1Q9UND3 HOMER3-204ENST00000539827 1979 ntAPPRIS P3 TSL 1 (best) BASIC20.15■□□□□ 0.82
NPIPA1Q9UND3 POLDIP2-201ENST00000540200 2121 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
NPIPA1Q9UND3 BMP2K-204ENST00000502871 3195 ntAPPRIS P3 TSL 1 (best) BASIC20.15■□□□□ 0.82
NPIPA1Q9UND3 RTCA-202ENST00000370126 538 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
NPIPA1Q9UND3 ASPDH-202ENST00000389208 1040 ntAPPRIS P1 TSL 5 BASIC20.15■□□□□ 0.82
NPIPA1Q9UND3 MCRIP1-205ENST00000572645 1038 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
NPIPA1Q9UND3 SCUBE1-208ENST00000615096 1119 ntTSL 2 BASIC20.15■□□□□ 0.82
NPIPA1Q9UND3 AL358852.1-201ENST00000623174 1268 ntBASIC20.15■□□□□ 0.82
NPIPA1Q9UND3 TSKS-202ENST00000358830 1367 ntAPPRIS ALT2 TSL 1 (best) BASIC20.15■□□□□ 0.82
NPIPA1Q9UND3 POMZP3-202ENST00000310842 1490 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
NPIPA1Q9UND3 COMT-206ENST00000407537 1457 ntAPPRIS P3 TSL 5 BASIC20.15■□□□□ 0.82
NPIPA1Q9UND3 SPRED3-204ENST00000587013 1539 ntTSL 5 BASIC20.15■□□□□ 0.82
NPIPA1Q9UND3 SH3RF3-AS1-201ENST00000567491 1604 ntBASIC20.15■□□□□ 0.82
NPIPA1Q9UND3 USP36-218ENST00000590546 1771 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
NPIPA1Q9UND3 METTL9-202ENST00000396014 1817 ntAPPRIS ALT1 TSL 1 (best) BASIC20.15■□□□□ 0.82
Retrieved 100 of 98,524 protein–RNA pairs in 21.8 ms