Protein–RNA interactions for Protein: Q9H9A6

LRRC40, Leucine-rich repeat-containing protein 40, humanhuman

Predictions only

Length 602 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LRRC40Q9H9A6 THOC6-202ENST00000326266 1419 ntAPPRIS P1 TSL 1 (best) BASIC22.31■■□□□ 1.16
LRRC40Q9H9A6 ADAD2-201ENST00000268624 2283 ntAPPRIS P3 TSL 2 BASIC22.31■■□□□ 1.16
LRRC40Q9H9A6 NRL-203ENST00000397002 1976 ntAPPRIS P1 TSL 1 (best) BASIC22.3■■□□□ 1.16
LRRC40Q9H9A6 TPM4-201ENST00000300933 2666 ntTSL 1 (best) BASIC22.3■■□□□ 1.16
LRRC40Q9H9A6 CERS4-205ENST00000558331 1803 ntTSL 5 BASIC22.3■■□□□ 1.16
LRRC40Q9H9A6 KRAS-204ENST00000557334 1052 ntTSL 5 BASIC22.3■■□□□ 1.16
LRRC40Q9H9A6 GTSE1-AS1-202ENST00000623117 1518 ntBASIC22.3■■□□□ 1.16
LRRC40Q9H9A6 AC004980.1-201ENST00000418663 2667 ntTSL 1 (best) BASIC22.3■■□□□ 1.16
LRRC40Q9H9A6 AC073188.6-202ENST00000616616 2281 ntTSL 1 (best) BASIC22.29■■□□□ 1.16
LRRC40Q9H9A6 IER2-201ENST00000292433 2085 ntAPPRIS P1 TSL 1 (best) BASIC22.29■■□□□ 1.16
LRRC40Q9H9A6 SOHLH1-201ENST00000298466 1987 ntAPPRIS P3 TSL 1 (best) BASIC22.29■■□□□ 1.16
LRRC40Q9H9A6 NKIRAS2-204ENST00000393880 1644 ntAPPRIS P1 TSL 2 BASIC22.29■■□□□ 1.16
LRRC40Q9H9A6 AL512631.2-201ENST00000604634 923 ntBASIC22.29■■□□□ 1.16
LRRC40Q9H9A6 SCUBE1-208ENST00000615096 1119 ntTSL 2 BASIC22.29■■□□□ 1.16
LRRC40Q9H9A6 AP002761.3-201ENST00000546324 1695 ntTSL 2 BASIC22.29■■□□□ 1.16
LRRC40Q9H9A6 RIOX1-201ENST00000304061 2429 ntAPPRIS P1 BASIC22.29■■□□□ 1.16
LRRC40Q9H9A6 SIMC1-202ENST00000341199 2056 ntAPPRIS P3 TSL 2 BASIC22.29■■□□□ 1.16
LRRC40Q9H9A6 IER5L-201ENST00000372491 2711 ntAPPRIS P1 BASIC22.29■■□□□ 1.16
LRRC40Q9H9A6 LRRC34-201ENST00000446859 1718 ntAPPRIS ALT2 TSL 2 BASIC22.28■■□□□ 1.16
LRRC40Q9H9A6 FRAT1-201ENST00000371021 2649 ntAPPRIS P1 BASIC22.28■■□□□ 1.16
LRRC40Q9H9A6 DISC1-223ENST00000628350 2363 ntAPPRIS ALT2 TSL 1 (best) BASIC22.28■■□□□ 1.16
LRRC40Q9H9A6 ST7L-201ENST00000343210 1866 ntAPPRIS P1 TSL 1 (best) BASIC22.28■■□□□ 1.16
LRRC40Q9H9A6 LEFTY1-201ENST00000272134 1626 ntAPPRIS P1 TSL 1 (best) BASIC22.28■■□□□ 1.16
LRRC40Q9H9A6 POLD2-218ENST00000610533 1619 ntTSL 1 (best) BASIC22.28■■□□□ 1.16
LRRC40Q9H9A6 NR0B1-202ENST00000378970 2021 ntAPPRIS P1 TSL 1 (best) BASIC22.28■■□□□ 1.16
LRRC40Q9H9A6 KLC3-204ENST00000585434 1764 ntAPPRIS ALT1 TSL 1 (best) BASIC22.28■■□□□ 1.16
LRRC40Q9H9A6 PLK5-202ENST00000454744 1930 ntAPPRIS P2 TSL 2 BASIC22.28■■□□□ 1.16
LRRC40Q9H9A6 NDUFV2-201ENST00000318388 930 ntAPPRIS P1 TSL 1 (best) BASIC22.28■■□□□ 1.16
LRRC40Q9H9A6 AC006455.2-201ENST00000429931 906 ntBASIC22.28■■□□□ 1.16
LRRC40Q9H9A6 SRD5A1P1-201ENST00000442297 786 ntBASIC22.28■■□□□ 1.16
LRRC40Q9H9A6 SUMF1-205ENST00000458465 1102 ntTSL 2 BASIC22.28■■□□□ 1.16
LRRC40Q9H9A6 QDPR-206ENST00000508623 601 ntTSL 3 BASIC22.28■■□□□ 1.16
LRRC40Q9H9A6 AC099791.2-201ENST00000605725 427 ntBASIC22.28■■□□□ 1.16
LRRC40Q9H9A6 SNHG7-201ENST00000414282 2357 ntTSL 2 BASIC22.28■■□□□ 1.16
LRRC40Q9H9A6 MXRA7-201ENST00000355797 5661 ntAPPRIS P4 TSL 2 BASIC22.28■■□□□ 1.16
LRRC40Q9H9A6 TOX2-201ENST00000341197 1880 ntAPPRIS P1 TSL 2 BASIC22.28■■□□□ 1.16
LRRC40Q9H9A6 ACTL10-201ENST00000330271 2028 ntAPPRIS P1 BASIC22.28■■□□□ 1.16
LRRC40Q9H9A6 TMEM165-201ENST00000381334 1928 ntAPPRIS P1 TSL 1 (best) BASIC22.27■■□□□ 1.16
LRRC40Q9H9A6 KIF2A-202ENST00000401507 2539 ntAPPRIS P1 TSL 1 (best) BASIC22.27■■□□□ 1.16
LRRC40Q9H9A6 PPP5C-201ENST00000012443 2109 ntAPPRIS P1 TSL 1 (best) BASIC22.27■■□□□ 1.16
LRRC40Q9H9A6 SPHK1-201ENST00000323374 2138 ntTSL 1 (best) BASIC22.27■■□□□ 1.16
LRRC40Q9H9A6 MOSPD3-204ENST00000424091 1115 ntTSL 1 (best) BASIC22.27■■□□□ 1.16
LRRC40Q9H9A6 NPAS1-202ENST00000449844 2043 ntAPPRIS P1 TSL 1 (best) BASIC22.27■■□□□ 1.16
LRRC40Q9H9A6 CDKN2A-207ENST00000497750 565 ntTSL 4 BASIC22.27■■□□□ 1.16
LRRC40Q9H9A6 ARFIP2-205ENST00000525235 852 ntTSL 2 BASIC22.27■■□□□ 1.16
LRRC40Q9H9A6 CCDC189-211ENST00000545825 1046 ntTSL 1 (best) BASIC22.27■■□□□ 1.16
LRRC40Q9H9A6 LINC00565-201ENST00000562710 2331 ntBASIC22.27■■□□□ 1.16
LRRC40Q9H9A6 SRR-208ENST00000576848 588 ntTSL 4 BASIC22.27■■□□□ 1.16
LRRC40Q9H9A6 CDKN2A-212ENST00000578845 678 ntTSL 2 BASIC22.27■■□□□ 1.16
LRRC40Q9H9A6 NR2F1-AS1-210ENST00000606739 1431 ntTSL 2 BASIC22.27■■□□□ 1.16
LRRC40Q9H9A6 SLC35A3-216ENST00000639221 1032 ntTSL 5 BASIC22.27■■□□□ 1.16
LRRC40Q9H9A6 GAS2L1-206ENST00000610653 2238 ntTSL 1 (best) BASIC22.27■■□□□ 1.16
LRRC40Q9H9A6 C14orf80-201ENST00000329886 1947 ntAPPRIS ALT2 TSL 1 (best) BASIC22.27■■□□□ 1.16
LRRC40Q9H9A6 BIN1-209ENST00000393040 2293 ntAPPRIS ALT2 TSL 1 (best) BASIC22.27■■□□□ 1.16
LRRC40Q9H9A6 EPCAM-202ENST00000405271 1530 ntTSL 5 BASIC22.26■■□□□ 1.15
LRRC40Q9H9A6 ECHDC1-203ENST00000368291 1354 ntTSL 2 BASIC22.26■■□□□ 1.15
LRRC40Q9H9A6 TARBP2-201ENST00000266987 1867 ntAPPRIS P1 TSL 1 (best) BASIC22.26■■□□□ 1.15
LRRC40Q9H9A6 RYK-208ENST00000620660 2942 ntAPPRIS P3 TSL 1 (best) BASIC22.26■■□□□ 1.15
LRRC40Q9H9A6 HEXB-201ENST00000261416 1901 ntAPPRIS P1 TSL 1 (best) BASIC22.26■■□□□ 1.15
LRRC40Q9H9A6 PARD3-209ENST00000374790 5825 ntTSL 5 BASIC22.26■■□□□ 1.15
LRRC40Q9H9A6 PCMTD2-202ENST00000299468 1049 ntTSL 5 BASIC22.26■■□□□ 1.15
LRRC40Q9H9A6 NAXE-201ENST00000368233 1012 ntTSL 2 BASIC22.26■■□□□ 1.15
LRRC40Q9H9A6 U2AF1-202ENST00000380276 940 ntAPPRIS ALT2 TSL 1 (best) BASIC22.26■■□□□ 1.15
LRRC40Q9H9A6 UQCR11-202ENST00000589880 504 ntAPPRIS P1 TSL 3 BASIC22.26■■□□□ 1.15
LRRC40Q9H9A6 pRNA.6-201ENST00000610482 90 ntBASIC22.26■■□□□ 1.15
LRRC40Q9H9A6 pRNA.5-201ENST00000612139 90 ntBASIC22.26■■□□□ 1.15
LRRC40Q9H9A6 FAM228B-208ENST00000613899 1238 ntAPPRIS ALT2 TSL 1 (best) BASIC22.26■■□□□ 1.15
LRRC40Q9H9A6 pRNA.11-201ENST00000618423 90 ntBASIC22.26■■□□□ 1.15
LRRC40Q9H9A6 pRNA.13-201ENST00000619112 90 ntBASIC22.26■■□□□ 1.15
LRRC40Q9H9A6 NKX6-2-201ENST00000368592 2673 ntAPPRIS P1 TSL 1 (best) BASIC22.26■■□□□ 1.15
LRRC40Q9H9A6 SKIDA1-201ENST00000444772 2667 ntAPPRIS ALT2 TSL 5 BASIC22.26■■□□□ 1.15
LRRC40Q9H9A6 IRF3-207ENST00000593922 1494 ntTSL 1 (best) BASIC22.26■■□□□ 1.15
LRRC40Q9H9A6 UHRF1BP1L-202ENST00000356828 2023 ntAPPRIS ALT2 TSL 1 (best) BASIC22.26■■□□□ 1.15
LRRC40Q9H9A6 CASP9-203ENST00000375890 1351 ntTSL 2 BASIC22.25■■□□□ 1.15
LRRC40Q9H9A6 P2RX5-201ENST00000225328 2309 ntAPPRIS P3 TSL 1 (best) BASIC22.25■■□□□ 1.15
LRRC40Q9H9A6 LSM14B-201ENST00000279068 2548 ntAPPRIS P1 TSL 5 BASIC22.25■■□□□ 1.15
LRRC40Q9H9A6 FMNL2-201ENST00000288670 5575 ntAPPRIS P1 TSL 1 (best) BASIC22.25■■□□□ 1.15
LRRC40Q9H9A6 AVPR2-201ENST00000337474 1622 ntAPPRIS P1 TSL 1 (best) BASIC22.25■■□□□ 1.15
LRRC40Q9H9A6 DMRT1-201ENST00000382276 2222 ntAPPRIS P1 TSL 1 (best) BASIC22.25■■□□□ 1.15
LRRC40Q9H9A6 DNAJC4-202ENST00000321685 1288 ntAPPRIS P3 TSL 1 (best) BASIC22.25■■□□□ 1.15
LRRC40Q9H9A6 CTAG1B-202ENST00000359887 998 ntTSL 2 BASIC22.25■■□□□ 1.15
LRRC40Q9H9A6 AC092171.4-201ENST00000609130 632 ntBASIC22.25■■□□□ 1.15
LRRC40Q9H9A6 LINC01881-206ENST00000614114 957 ntTSL 2 BASIC22.25■■□□□ 1.15
LRRC40Q9H9A6 DNAJC4-212ENST00000628077 938 ntTSL 5 BASIC22.25■■□□□ 1.15
LRRC40Q9H9A6 AL391650.1-201ENST00000448923 1468 ntAPPRIS P1 TSL 2 BASIC22.25■■□□□ 1.15
LRRC40Q9H9A6 HOXC8-201ENST00000040584 1889 ntAPPRIS P1 TSL 1 (best) BASIC22.25■■□□□ 1.15
LRRC40Q9H9A6 PLEKHO1-201ENST00000369124 2050 ntAPPRIS P1 TSL 1 (best) BASIC22.25■■□□□ 1.15
LRRC40Q9H9A6 AC133637.1-201ENST00000624115 1537 ntBASIC22.25■■□□□ 1.15
LRRC40Q9H9A6 AC005906.2-202ENST00000638821 2168 ntTSL 5 BASIC22.25■■□□□ 1.15
LRRC40Q9H9A6 AC080038.3-201ENST00000623346 1952 ntBASIC22.25■■□□□ 1.15
LRRC40Q9H9A6 STK19-202ENST00000375333 1557 ntAPPRIS P3 TSL 1 (best) BASIC22.25■■□□□ 1.15
LRRC40Q9H9A6 NEIL1-206ENST00000564784 2019 ntAPPRIS P1 TSL 2 BASIC22.24■■□□□ 1.15
LRRC40Q9H9A6 GPRC5B-210ENST00000569847 1830 ntAPPRIS P2 TSL 2 BASIC22.24■■□□□ 1.15
LRRC40Q9H9A6 NFIX-203ENST00000397661 3143 ntTSL 5 BASIC22.24■■□□□ 1.15
LRRC40Q9H9A6 SYNDIG1-201ENST00000376862 2522 ntAPPRIS P1 TSL 1 (best) BASIC22.24■■□□□ 1.15
LRRC40Q9H9A6 SPATA2L-201ENST00000289805 2335 ntAPPRIS P1 TSL 1 (best) BASIC22.24■■□□□ 1.15
LRRC40Q9H9A6 P4HA2-202ENST00000360568 2313 ntAPPRIS ALT1 TSL 1 (best) BASIC22.24■■□□□ 1.15
LRRC40Q9H9A6 IGFBP1-201ENST00000275525 1653 ntAPPRIS P2 TSL 1 (best) BASIC22.24■■□□□ 1.15
LRRC40Q9H9A6 C4orf36-201ENST00000295898 881 ntAPPRIS P1 TSL 1 (best) BASIC22.24■■□□□ 1.15
LRRC40Q9H9A6 SURF2-201ENST00000371964 842 ntAPPRIS P1 TSL 1 (best) BASIC22.24■■□□□ 1.15
Retrieved 100 of 98,524 protein–RNA pairs in 32.7 ms