Protein–RNA interactions for Protein: Q8N1M1

BEST3, Bestrophin-3, humanhuman

Predictions only

Length 668 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BEST3Q8N1M1 BLOC1S4-201ENST00000320776 1617 ntAPPRIS P1 BASIC20.37■□□□□ 0.85
BEST3Q8N1M1 CEBPB-AS1-201ENST00000613921 2648 ntTSL 3 BASIC20.37■□□□□ 0.85
BEST3Q8N1M1 BTBD17-201ENST00000375366 1805 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
BEST3Q8N1M1 AC099805.1-201ENST00000523987 1797 ntTSL 1 (best) BASIC20.36■□□□□ 0.85
BEST3Q8N1M1 OSCAR-209ENST00000616215 2016 ntAPPRIS ALT2 TSL 5 BASIC20.36■□□□□ 0.85
BEST3Q8N1M1 CT47B1-201ENST00000371311 1328 ntAPPRIS P1 TSL 5 BASIC20.36■□□□□ 0.85
BEST3Q8N1M1 DXO-201ENST00000337523 1628 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
BEST3Q8N1M1 FAM110A-206ENST00000541082 1614 ntAPPRIS P1 TSL 3 BASIC20.36■□□□□ 0.85
BEST3Q8N1M1 AC004687.1-201ENST00000579003 1625 ntBASIC20.36■□□□□ 0.85
BEST3Q8N1M1 NMRAL1-202ENST00000404295 1233 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
BEST3Q8N1M1 GALNS-211ENST00000568311 703 ntTSL 1 (best) BASIC20.36■□□□□ 0.85
BEST3Q8N1M1 SLC12A5-217ENST00000626937 1224 ntTSL 1 (best) BASIC20.36■□□□□ 0.85
BEST3Q8N1M1 STK19-202ENST00000375333 1557 ntAPPRIS P3 TSL 1 (best) BASIC20.36■□□□□ 0.85
BEST3Q8N1M1 SPON2-222ENST00000617421 2156 ntAPPRIS P1 TSL 5 BASIC20.36■□□□□ 0.85
BEST3Q8N1M1 DTNB-211ENST00000407661 2420 ntAPPRIS ALT1 TSL 1 (best) BASIC20.36■□□□□ 0.85
BEST3Q8N1M1 PDS5A-202ENST00000503396 2685 ntTSL 1 (best) BASIC20.36■□□□□ 0.85
BEST3Q8N1M1 ROR1-202ENST00000371080 2305 ntTSL 1 (best) BASIC20.36■□□□□ 0.85
BEST3Q8N1M1 HMGA2-205ENST00000425208 1444 ntTSL 1 (best) BASIC20.36■□□□□ 0.85
BEST3Q8N1M1 DTNB-206ENST00000404103 2384 ntAPPRIS ALT2 TSL 5 BASIC20.35■□□□□ 0.85
BEST3Q8N1M1 PARP9-207ENST00000492382 1837 ntTSL 1 (best) BASIC20.35■□□□□ 0.85
BEST3Q8N1M1 CPOX-201ENST00000264193 2825 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
BEST3Q8N1M1 BCAP29-209ENST00000465919 942 ntTSL 2 BASIC20.35■□□□□ 0.85
BEST3Q8N1M1 AL162430.1-201ENST00000480705 870 ntBASIC20.35■□□□□ 0.85
BEST3Q8N1M1 AP005435.1-201ENST00000529293 1178 ntBASIC20.35■□□□□ 0.85
BEST3Q8N1M1 MIR6084-201ENST00000622012 110 ntBASIC20.35■□□□□ 0.85
BEST3Q8N1M1 AL358852.1-201ENST00000623174 1268 ntBASIC20.35■□□□□ 0.85
BEST3Q8N1M1 FAM43A-201ENST00000329759 2494 ntAPPRIS P1 BASIC20.35■□□□□ 0.85
BEST3Q8N1M1 ALG1L9P-201ENST00000508969 2165 ntTSL 1 (best) BASIC20.35■□□□□ 0.85
BEST3Q8N1M1 MID1IP1-203ENST00000457894 1902 ntAPPRIS P1 TSL 3 BASIC20.35■□□□□ 0.85
BEST3Q8N1M1 LYRM1-201ENST00000219168 1626 ntAPPRIS P1 TSL 2 BASIC20.35■□□□□ 0.85
BEST3Q8N1M1 R3HDM4-201ENST00000361574 1815 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
BEST3Q8N1M1 PRMT2-204ENST00000397628 954 ntTSL 2 BASIC20.34■□□□□ 0.85
BEST3Q8N1M1 HES6-202ENST00000409002 1286 ntAPPRIS ALT2 TSL 1 (best) BASIC20.34■□□□□ 0.85
BEST3Q8N1M1 PARL-206ENST00000435888 1098 ntTSL 5 BASIC20.34■□□□□ 0.85
BEST3Q8N1M1 AC012414.1-201ENST00000556676 535 ntBASIC20.34■□□□□ 0.85
BEST3Q8N1M1 AC007326.4-201ENST00000638240 1669 ntAPPRIS P1 TSL 5 BASIC20.34■□□□□ 0.85
BEST3Q8N1M1 TMEM230-205ENST00000379279 1636 ntAPPRIS P1 TSL 2 BASIC20.34■□□□□ 0.85
BEST3Q8N1M1 ZDHHC1-201ENST00000348579 2047 ntAPPRIS P2 TSL 1 (best) BASIC20.34■□□□□ 0.85
BEST3Q8N1M1 C5orf49-201ENST00000399810 2385 ntAPPRIS P2 TSL 1 (best) BASIC20.34■□□□□ 0.85
BEST3Q8N1M1 TMEM102-201ENST00000323206 1973 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
BEST3Q8N1M1 TMEM102-202ENST00000396568 1962 ntAPPRIS P1 TSL 2 BASIC20.34■□□□□ 0.85
BEST3Q8N1M1 ZFAND2B-202ENST00000409097 1765 ntTSL 2 BASIC20.34■□□□□ 0.85
BEST3Q8N1M1 NEURL4-201ENST00000315614 5182 ntAPPRIS ALT2 TSL 1 (best) BASIC20.33■□□□□ 0.85
BEST3Q8N1M1 UCHL5-201ENST00000367448 1534 ntTSL 1 (best) BASIC20.33■□□□□ 0.85
BEST3Q8N1M1 AK8-201ENST00000298545 2072 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
BEST3Q8N1M1 MRPL37-202ENST00000360840 1483 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
BEST3Q8N1M1 TMEM268-202ENST00000374049 4578 ntAPPRIS ALT1 TSL 5 BASIC20.33■□□□□ 0.85
BEST3Q8N1M1 NINJ1-201ENST00000375446 1281 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
BEST3Q8N1M1 INS-202ENST00000381330 597 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
BEST3Q8N1M1 GDNF-203ENST00000381826 778 ntTSL 1 (best) BASIC20.33■□□□□ 0.85
BEST3Q8N1M1 GDNF-204ENST00000427982 856 ntTSL 1 (best) BASIC20.33■□□□□ 0.85
BEST3Q8N1M1 NEBL-AS1-202ENST00000439097 661 ntTSL 2 BASIC20.33■□□□□ 0.85
BEST3Q8N1M1 YBX1P1-201ENST00000445822 960 ntBASIC20.33■□□□□ 0.85
BEST3Q8N1M1 STOML2-202ENST00000452248 1296 ntTSL 2 BASIC20.33■□□□□ 0.85
BEST3Q8N1M1 OTUB1-212ENST00000543988 1259 ntTSL 1 (best) BASIC20.33■□□□□ 0.85
BEST3Q8N1M1 STOML2-205ENST00000619795 1293 ntTSL 3 BASIC20.33■□□□□ 0.85
BEST3Q8N1M1 FAM167A-204ENST00000528897 1620 ntAPPRIS P1 TSL 2 BASIC20.33■□□□□ 0.84
BEST3Q8N1M1 KCTD15-207ENST00000589786 1625 ntAPPRIS P1 TSL 2 BASIC20.33■□□□□ 0.84
BEST3Q8N1M1 NEURL4-202ENST00000399464 5200 ntAPPRIS P4 TSL 1 (best) BASIC20.33■□□□□ 0.84
BEST3Q8N1M1 NIPSNAP2-201ENST00000322090 1999 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.84
BEST3Q8N1M1 CAMK2N1-201ENST00000375078 2336 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.84
BEST3Q8N1M1 CFP-202ENST00000377005 1435 ntAPPRIS ALT2 TSL 1 (best) BASIC20.33■□□□□ 0.84
BEST3Q8N1M1 CBWD5-207ENST00000382405 1791 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.84
BEST3Q8N1M1 EPS8L1-205ENST00000586329 2130 ntTSL 5 BASIC20.33■□□□□ 0.84
BEST3Q8N1M1 KDELR1-203ENST00000597017 1594 ntTSL 2 BASIC20.33■□□□□ 0.84
BEST3Q8N1M1 BX088645.1-201ENST00000636699 1728 ntAPPRIS P1 TSL 5 BASIC20.33■□□□□ 0.84
BEST3Q8N1M1 YAP1-210ENST00000615667 5398 ntAPPRIS ALT2 TSL 5 BASIC20.32■□□□□ 0.84
BEST3Q8N1M1 LEF1-AS1-207ENST00000512637 1675 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
BEST3Q8N1M1 DGAT2-201ENST00000228027 2453 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
BEST3Q8N1M1 RAB11FIP3-201ENST00000262305 4831 ntAPPRIS P2 TSL 1 (best) BASIC20.32■□□□□ 0.84
BEST3Q8N1M1 OAZ2-201ENST00000326005 1934 ntAPPRIS P1 TSL 5 BASIC20.32■□□□□ 0.84
BEST3Q8N1M1 PTPRM-211ENST00000580170 5941 ntAPPRIS ALT2 TSL 1 (best) BASIC20.32■□□□□ 0.84
BEST3Q8N1M1 JARID2-AS1-201ENST00000441978 455 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
BEST3Q8N1M1 AL354811.1-201ENST00000610286 706 ntBASIC20.32■□□□□ 0.84
BEST3Q8N1M1 ANKRD28-201ENST00000399451 6564 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
BEST3Q8N1M1 H1FX-201ENST00000333762 1507 ntAPPRIS P1 BASIC20.32■□□□□ 0.84
BEST3Q8N1M1 ASCC1-204ENST00000394915 1510 ntTSL 5 BASIC20.32■□□□□ 0.84
BEST3Q8N1M1 BRD3-202ENST00000371834 2529 ntAPPRIS ALT2 TSL 1 (best) BASIC20.31■□□□□ 0.84
BEST3Q8N1M1 CCDC157-202ENST00000399824 1759 ntAPPRIS ALT2 TSL 1 (best) BASIC20.31■□□□□ 0.84
BEST3Q8N1M1 SCN1B-206ENST00000638536 1600 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
BEST3Q8N1M1 CDIPT-210ENST00000570016 1346 ntAPPRIS P1 TSL 5 BASIC20.31■□□□□ 0.84
BEST3Q8N1M1 TMEM8B-203ENST00000377996 2473 ntTSL 2 BASIC20.31■□□□□ 0.84
BEST3Q8N1M1 AGTR1-203ENST00000404754 2252 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
BEST3Q8N1M1 RTCA-202ENST00000370126 538 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
BEST3Q8N1M1 ASPDH-202ENST00000389208 1040 ntAPPRIS P1 TSL 5 BASIC20.31■□□□□ 0.84
BEST3Q8N1M1 AC027612.3-201ENST00000413684 1047 ntBASIC20.31■□□□□ 0.84
BEST3Q8N1M1 CKLF-205ENST00000417030 628 ntAPPRIS ALT2 TSL 4 BASIC20.31■□□□□ 0.84
BEST3Q8N1M1 TMEM185B-201ENST00000426077 2131 ntAPPRIS P1 BASIC20.31■□□□□ 0.84
BEST3Q8N1M1 PYCARD-AS1-201ENST00000561916 1095 ntTSL 2 BASIC20.31■□□□□ 0.84
BEST3Q8N1M1 AL031602.1-201ENST00000633169 911 ntBASIC20.31■□□□□ 0.84
BEST3Q8N1M1 TBX1-202ENST00000332710 2084 ntAPPRIS P4 TSL 1 (best) BASIC20.31■□□□□ 0.84
BEST3Q8N1M1 SEPT4-205ENST00000426861 1906 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
BEST3Q8N1M1 TRIM28-202ENST00000341753 2709 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
BEST3Q8N1M1 BCL11B-203ENST00000443726 2599 ntAPPRIS ALT2 TSL 5 BASIC20.31■□□□□ 0.84
BEST3Q8N1M1 SETD9-211ENST00000628593 1306 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
BEST3Q8N1M1 ADARB2-202ENST00000381310 1810 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
BEST3Q8N1M1 KLC1-205ENST00000380038 2322 ntTSL 2 BASIC20.3■□□□□ 0.84
BEST3Q8N1M1 MRPL14-201ENST00000372014 959 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
BEST3Q8N1M1 LHPP-203ENST00000392757 840 ntTSL 3 BASIC20.3■□□□□ 0.84
BEST3Q8N1M1 POLR2H-204ENST00000438240 994 ntTSL 3 BASIC20.3■□□□□ 0.84
Retrieved 100 of 98,524 protein–RNA pairs in 27.4 ms