Protein–RNA interactions for Protein: Q8N1B4

VPS52, Vacuolar protein sorting-associated protein 52 homolog, humanhuman

Predictions only

Length 723 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS52Q8N1B4 B3GAT3-201ENST00000265471 1641 ntAPPRIS P1 TSL 1 (best) BASIC23.78■■□□□ 1.4
VPS52Q8N1B4 PYCARD-201ENST00000247470 990 ntAPPRIS P1 TSL 1 (best) BASIC23.78■■□□□ 1.4
VPS52Q8N1B4 INS-202ENST00000381330 597 ntAPPRIS P1 TSL 1 (best) BASIC23.78■■□□□ 1.4
VPS52Q8N1B4 LHPP-203ENST00000392757 840 ntTSL 3 BASIC23.78■■□□□ 1.4
VPS52Q8N1B4 ATP6V0E2-204ENST00000464662 513 ntAPPRIS P1 TSL 2 BASIC23.78■■□□□ 1.4
VPS52Q8N1B4 AC024267.6-201ENST00000580603 583 ntTSL 3 BASIC23.78■■□□□ 1.4
VPS52Q8N1B4 POLR2E-214ENST00000619917 932 ntTSL 5 BASIC23.78■■□□□ 1.4
VPS52Q8N1B4 ADPRHL2-201ENST00000373178 1668 ntAPPRIS P1 TSL 1 (best) BASIC23.78■■□□□ 1.4
VPS52Q8N1B4 RHBDL3-204ENST00000538145 1338 ntAPPRIS ALT2 TSL 1 (best) BASIC23.78■■□□□ 1.4
VPS52Q8N1B4 NKIRAS2-204ENST00000393880 1644 ntAPPRIS P1 TSL 2 BASIC23.77■■□□□ 1.4
VPS52Q8N1B4 C1QTNF4-201ENST00000302514 1664 ntAPPRIS P1 TSL 1 (best) BASIC23.77■■□□□ 1.4
VPS52Q8N1B4 PON2-218ENST00000633531 1653 ntAPPRIS P1 TSL 1 (best) BASIC23.77■■□□□ 1.4
VPS52Q8N1B4 LINC01529-204ENST00000636474 1715 ntBASIC23.77■■□□□ 1.4
VPS52Q8N1B4 C5orf38-201ENST00000334000 890 ntAPPRIS P3 TSL 1 (best) BASIC23.77■■□□□ 1.4
VPS52Q8N1B4 CD47-202ENST00000361309 1285 ntTSL 1 (best) BASIC23.77■■□□□ 1.4
VPS52Q8N1B4 MELTF-AS1-202ENST00000415244 951 ntTSL 1 (best) BASIC23.77■■□□□ 1.4
VPS52Q8N1B4 GXYLT1P2-201ENST00000433312 1230 ntBASIC23.77■■□□□ 1.4
VPS52Q8N1B4 ATE1-AS1-201ENST00000437593 951 ntTSL 2 BASIC23.77■■□□□ 1.4
VPS52Q8N1B4 GALNS-211ENST00000568311 703 ntTSL 1 (best) BASIC23.77■■□□□ 1.4
VPS52Q8N1B4 LIMD2-205ENST00000578402 1534 ntAPPRIS P1 TSL 1 (best) BASIC23.77■■□□□ 1.4
VPS52Q8N1B4 NAAA-204ENST00000507187 1750 ntTSL 1 (best) BASIC23.77■■□□□ 1.4
VPS52Q8N1B4 MESP2-201ENST00000341735 1552 ntAPPRIS P1 TSL 1 (best) BASIC23.77■■□□□ 1.4
VPS52Q8N1B4 RNASEH2B-201ENST00000336617 1629 ntAPPRIS P1 TSL 1 (best) BASIC23.77■■□□□ 1.4
VPS52Q8N1B4 AC144652.1-201ENST00000609974 1624 ntBASIC23.77■■□□□ 1.4
VPS52Q8N1B4 TARSL2-207ENST00000615656 2356 ntAPPRIS ALT2 TSL 5 BASIC23.77■■□□□ 1.4
VPS52Q8N1B4 AC133561.1-201ENST00000568600 2415 ntBASIC23.76■■□□□ 1.39
VPS52Q8N1B4 GALK1-201ENST00000225614 1445 ntAPPRIS P1 TSL 2 BASIC23.76■■□□□ 1.39
VPS52Q8N1B4 ARF1-213ENST00000540651 1972 ntAPPRIS P1 TSL 2 BASIC23.76■■□□□ 1.39
VPS52Q8N1B4 RILP-201ENST00000301336 1771 ntAPPRIS P1 TSL 1 (best) BASIC23.76■■□□□ 1.39
VPS52Q8N1B4 PPP2R2C-203ENST00000382599 1807 ntAPPRIS P1 TSL 1 (best) BASIC23.76■■□□□ 1.39
VPS52Q8N1B4 SLC35A2-205ENST00000376529 865 ntTSL 3 BASIC23.76■■□□□ 1.39
VPS52Q8N1B4 PRMT2-204ENST00000397628 954 ntTSL 2 BASIC23.76■■□□□ 1.39
VPS52Q8N1B4 AC004911.1-201ENST00000416316 871 ntBASIC23.76■■□□□ 1.39
VPS52Q8N1B4 USF3-203ENST00000491165 2133 ntAPPRIS ALT2 TSL 1 (best) BASIC23.76■■□□□ 1.39
VPS52Q8N1B4 AP005435.1-201ENST00000529293 1178 ntBASIC23.76■■□□□ 1.39
VPS52Q8N1B4 TSEN15-207ENST00000533373 618 ntTSL 2 BASIC23.76■■□□□ 1.39
VPS52Q8N1B4 KRT18P14-201ENST00000534205 1250 ntBASIC23.76■■□□□ 1.39
VPS52Q8N1B4 UQCR11-202ENST00000589880 504 ntAPPRIS P1 TSL 3 BASIC23.76■■□□□ 1.39
VPS52Q8N1B4 NTF6G-201ENST00000591094 616 ntBASIC23.76■■□□□ 1.39
VPS52Q8N1B4 IRF3-228ENST00000601291 1556 ntTSL 1 (best) BASIC23.76■■□□□ 1.39
VPS52Q8N1B4 PRMT5-213ENST00000553897 1857 ntTSL 2 BASIC23.76■■□□□ 1.39
VPS52Q8N1B4 AVPR2-203ENST00000370049 1307 ntTSL 1 (best) BASIC23.76■■□□□ 1.39
VPS52Q8N1B4 LINC02228-203ENST00000641970 1355 ntBASIC23.76■■□□□ 1.39
VPS52Q8N1B4 FAM102B-202ENST00000405454 1585 ntAPPRIS ALT2 TSL 5 BASIC23.75■■□□□ 1.39
VPS52Q8N1B4 MLF2-206ENST00000539187 1110 ntAPPRIS P1 TSL 1 (best) BASIC23.75■■□□□ 1.39
VPS52Q8N1B4 MRM1-203ENST00000612760 1284 ntTSL 1 (best) BASIC23.75■■□□□ 1.39
VPS52Q8N1B4 STK19-201ENST00000375331 1663 ntAPPRIS ALT2 TSL 1 (best) BASIC23.75■■□□□ 1.39
VPS52Q8N1B4 IRF3-207ENST00000593922 1494 ntTSL 1 (best) BASIC23.75■■□□□ 1.39
VPS52Q8N1B4 C1QL2-201ENST00000272520 2043 ntAPPRIS P1 TSL 1 (best) BASIC23.74■■□□□ 1.39
VPS52Q8N1B4 KDELR1-203ENST00000597017 1594 ntTSL 2 BASIC23.74■■□□□ 1.39
VPS52Q8N1B4 SLC9A3-203ENST00000514375 2504 ntAPPRIS ALT2 TSL 1 (best) BASIC23.74■■□□□ 1.39
VPS52Q8N1B4 SAMD8-202ENST00000372690 1654 ntTSL 1 (best) BASIC23.74■■□□□ 1.39
VPS52Q8N1B4 AC012645.1-201ENST00000515455 1650 ntTSL 1 (best) BASIC23.74■■□□□ 1.39
VPS52Q8N1B4 XBP1-207ENST00000611155 1794 ntTSL 5 BASIC23.74■■□□□ 1.39
VPS52Q8N1B4 AIDA-202ENST00000355727 1072 ntTSL 5 BASIC23.74■■□□□ 1.39
VPS52Q8N1B4 GRPEL2-202ENST00000416916 1006 ntTSL 2 BASIC23.74■■□□□ 1.39
VPS52Q8N1B4 PRKCQ-AS1-202ENST00000445427 1133 ntTSL 1 (best) BASIC23.74■■□□□ 1.39
VPS52Q8N1B4 C17orf49-202ENST00000546495 996 ntAPPRIS ALT1 TSL 2 BASIC23.74■■□□□ 1.39
VPS52Q8N1B4 TERF1P2-201ENST00000583350 1212 ntBASIC23.74■■□□□ 1.39
VPS52Q8N1B4 WT1-AS-205ENST00000494911 1320 ntTSL 4 BASIC23.74■■□□□ 1.39
VPS52Q8N1B4 SETD9-211ENST00000628593 1306 ntTSL 1 (best) BASIC23.74■■□□□ 1.39
VPS52Q8N1B4 NDUFAF1-201ENST00000260361 1461 ntAPPRIS P1 TSL 1 (best) BASIC23.74■■□□□ 1.39
VPS52Q8N1B4 MRPL37-202ENST00000360840 1483 ntAPPRIS P1 TSL 1 (best) BASIC23.74■■□□□ 1.39
VPS52Q8N1B4 CCDC154-201ENST00000389176 2212 ntAPPRIS P5 TSL 5 BASIC23.74■■□□□ 1.39
VPS52Q8N1B4 CCZ1B-201ENST00000316731 2885 ntAPPRIS P1 TSL 1 (best) BASIC23.74■■□□□ 1.39
VPS52Q8N1B4 B3GNT4-201ENST00000324189 1642 ntTSL 1 (best) BASIC23.73■■□□□ 1.39
VPS52Q8N1B4 FAM110A-206ENST00000541082 1614 ntAPPRIS P1 TSL 3 BASIC23.73■■□□□ 1.39
VPS52Q8N1B4 THRA-209ENST00000584985 2421 ntTSL 1 (best) BASIC23.73■■□□□ 1.39
VPS52Q8N1B4 PYCR3-203ENST00000433751 1000 ntAPPRIS ALT2 TSL 2 BASIC23.73■■□□□ 1.39
VPS52Q8N1B4 AMZ2P1-201ENST00000397713 2259 ntTSL 1 (best) BASIC23.73■■□□□ 1.39
VPS52Q8N1B4 PPP1R1B-201ENST00000254079 1845 ntAPPRIS P1 TSL 1 (best) BASIC23.73■■□□□ 1.39
VPS52Q8N1B4 ZNF444-211ENST00000592949 1906 ntAPPRIS ALT2 TSL 1 (best) BASIC23.72■■□□□ 1.39
VPS52Q8N1B4 CTSF-201ENST00000310325 2035 ntAPPRIS P1 TSL 1 (best) BASIC23.72■■□□□ 1.39
VPS52Q8N1B4 ST3GAL5-268ENST00000640982 2465 ntAPPRIS ALT2 TSL 5 BASIC23.72■■□□□ 1.39
VPS52Q8N1B4 SRXN1-201ENST00000381962 2698 ntAPPRIS P1 TSL 1 (best) BASIC23.72■■□□□ 1.39
VPS52Q8N1B4 MIR31HG-201ENST00000304425 745 ntTSL 2 BASIC23.72■■□□□ 1.39
VPS52Q8N1B4 NT5C3AP1-201ENST00000394500 1012 ntBASIC23.72■■□□□ 1.39
VPS52Q8N1B4 SLC26A1-203ENST00000398520 1111 ntTSL 1 (best) BASIC23.72■■□□□ 1.39
VPS52Q8N1B4 AP2S1-203ENST00000593442 636 ntTSL 2 BASIC23.72■■□□□ 1.39
VPS52Q8N1B4 MPST-204ENST00000404393 1329 ntTSL 5 BASIC23.72■■□□□ 1.39
VPS52Q8N1B4 HMGA2-205ENST00000425208 1444 ntTSL 1 (best) BASIC23.72■■□□□ 1.39
VPS52Q8N1B4 SIRT7-201ENST00000328666 1743 ntAPPRIS P1 TSL 1 (best) BASIC23.72■■□□□ 1.39
VPS52Q8N1B4 NIPSNAP2-205ENST00000446778 1882 ntTSL 2 BASIC23.72■■□□□ 1.39
VPS52Q8N1B4 LINC01578-209ENST00000557682 2683 ntTSL 2 BASIC23.72■■□□□ 1.39
VPS52Q8N1B4 SOX10-201ENST00000360880 2861 ntAPPRIS P1 TSL 1 (best) BASIC23.72■■□□□ 1.39
VPS52Q8N1B4 SOX10-202ENST00000396884 2879 ntAPPRIS P1 TSL 1 (best) BASIC23.72■■□□□ 1.39
VPS52Q8N1B4 HOMER2-201ENST00000304231 1990 ntAPPRIS P4 TSL 5 BASIC23.71■■□□□ 1.39
VPS52Q8N1B4 GAS2L1-201ENST00000406549 1803 ntTSL 1 (best) BASIC23.71■■□□□ 1.39
VPS52Q8N1B4 FKBP8-209ENST00000597960 1781 ntAPPRIS P3 TSL 5 BASIC23.71■■□□□ 1.39
VPS52Q8N1B4 SHD-204ENST00000599689 1729 ntTSL 5 BASIC23.71■■□□□ 1.39
VPS52Q8N1B4 NMI-201ENST00000243346 1623 ntAPPRIS P1 TSL 1 (best) BASIC23.71■■□□□ 1.39
VPS52Q8N1B4 SLC25A5-AS1-202ENST00000445759 1616 ntTSL 1 (best) BASIC23.71■■□□□ 1.39
VPS52Q8N1B4 MTX2-201ENST00000249442 1364 ntAPPRIS P1 TSL 1 (best) BASIC23.71■■□□□ 1.39
VPS52Q8N1B4 TNFRSF18-202ENST00000379265 705 ntAPPRIS ALT2 TSL 1 (best) BASIC23.71■■□□□ 1.39
VPS52Q8N1B4 RNF208-201ENST00000391553 1077 ntAPPRIS P1 BASIC23.71■■□□□ 1.39
VPS52Q8N1B4 RNF208-202ENST00000392827 1135 ntAPPRIS P1 TSL 5 BASIC23.71■■□□□ 1.39
VPS52Q8N1B4 AC062017.1-203ENST00000413029 455 ntTSL 2 BASIC23.71■■□□□ 1.39
VPS52Q8N1B4 DLX3-202ENST00000512495 834 ntTSL 2 BASIC23.71■■□□□ 1.39
VPS52Q8N1B4 ASRGL1-210ENST00000534571 639 ntTSL 2 BASIC23.71■■□□□ 1.39
VPS52Q8N1B4 ELANE-202ENST00000590230 1028 ntAPPRIS P1 TSL 5 BASIC23.71■■□□□ 1.39
Retrieved 100 of 98,524 protein–RNA pairs in 24 ms