Protein–RNA interactions for Protein: Q8IWA6

CCDC60, Coiled-coil domain-containing protein 60, humanhuman

Predicted RBP Predictions only

Length 550 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC60Q8IWA6 SRPK3-203ENST00000370104 1753 ntAPPRIS ALT2 TSL 1 (best) BASIC24.57■■□□□ 1.52
CCDC60Q8IWA6 FAM120B-204ENST00000625626 1794 ntAPPRIS ALT2 TSL 2 BASIC24.57■■□□□ 1.52
CCDC60Q8IWA6 TMEM64-201ENST00000418210 4663 ntTSL 2 BASIC24.57■■□□□ 1.52
CCDC60Q8IWA6 B4GAT1-201ENST00000311181 2072 ntAPPRIS P1 TSL 1 (best) BASIC24.57■■□□□ 1.52
CCDC60Q8IWA6 IGF2-AS-201ENST00000381361 2063 ntTSL 2 BASIC24.57■■□□□ 1.52
CCDC60Q8IWA6 AC027612.3-201ENST00000413684 1047 ntBASIC24.57■■□□□ 1.52
CCDC60Q8IWA6 YBX1P1-201ENST00000445822 960 ntBASIC24.57■■□□□ 1.52
CCDC60Q8IWA6 C1QTNF5-203ENST00000530681 1046 ntAPPRIS P1 TSL 1 (best) BASIC24.57■■□□□ 1.52
CCDC60Q8IWA6 AL354811.1-201ENST00000610286 706 ntBASIC24.57■■□□□ 1.52
CCDC60Q8IWA6 MMD-201ENST00000262065 2735 ntAPPRIS P1 TSL 1 (best) BASIC24.57■■□□□ 1.52
CCDC60Q8IWA6 EID2B-201ENST00000326282 1865 ntAPPRIS P1 BASIC24.57■■□□□ 1.52
CCDC60Q8IWA6 RARA-203ENST00000394086 2008 ntTSL 2 BASIC24.57■■□□□ 1.52
CCDC60Q8IWA6 RAB24-201ENST00000303251 1311 ntAPPRIS P1 TSL 1 (best) BASIC24.57■■□□□ 1.52
CCDC60Q8IWA6 USP36-218ENST00000590546 1771 ntTSL 1 (best) BASIC24.57■■□□□ 1.52
CCDC60Q8IWA6 VGLL2-201ENST00000326274 2212 ntAPPRIS P1 TSL 1 (best) BASIC24.57■■□□□ 1.52
CCDC60Q8IWA6 SHD-201ENST00000543264 2577 ntAPPRIS P1 TSL 1 (best) BASIC24.56■■□□□ 1.52
CCDC60Q8IWA6 CCND3-202ENST00000372988 2133 ntTSL 1 (best) BASIC24.56■■□□□ 1.52
CCDC60Q8IWA6 PPP1R12B-202ENST00000356764 1687 ntTSL 1 (best) BASIC24.56■■□□□ 1.52
CCDC60Q8IWA6 SRPK3-204ENST00000370108 1863 ntAPPRIS ALT2 TSL 5 BASIC24.56■■□□□ 1.52
CCDC60Q8IWA6 CCKBR-206ENST00000532715 1734 ntTSL 3 BASIC24.56■■□□□ 1.52
CCDC60Q8IWA6 PRKCQ-AS1-204ENST00000455810 920 ntTSL 2 BASIC24.56■■□□□ 1.52
CCDC60Q8IWA6 AC061979.1-201ENST00000532061 434 ntTSL 5 BASIC24.56■■□□□ 1.52
CCDC60Q8IWA6 SLC25A39-201ENST00000225308 1607 ntAPPRIS P3 TSL 1 (best) BASIC24.56■■□□□ 1.52
CCDC60Q8IWA6 STX4-201ENST00000313843 1481 ntAPPRIS P1 TSL 1 (best) BASIC24.56■■□□□ 1.52
CCDC60Q8IWA6 THRA-202ENST00000394121 2260 ntTSL 2 BASIC24.55■■□□□ 1.52
CCDC60Q8IWA6 DUSP8P3-201ENST00000399571 1760 ntBASIC24.55■■□□□ 1.52
CCDC60Q8IWA6 CEBPD-201ENST00000408965 2178 ntAPPRIS P1 BASIC24.55■■□□□ 1.52
CCDC60Q8IWA6 ITGA9-AS1-210ENST00000457661 738 ntTSL 4 BASIC24.55■■□□□ 1.52
CCDC60Q8IWA6 FRMD8-208ENST00000531296 366 ntTSL 1 (best) BASIC24.55■■□□□ 1.52
CCDC60Q8IWA6 LINC02136-201ENST00000567469 530 ntTSL 4 BASIC24.55■■□□□ 1.52
CCDC60Q8IWA6 SLC12A5-217ENST00000626937 1224 ntTSL 1 (best) BASIC24.55■■□□□ 1.52
CCDC60Q8IWA6 C1orf122-202ENST00000373043 2229 ntAPPRIS ALT2 TSL 1 (best) BASIC24.55■■□□□ 1.52
CCDC60Q8IWA6 EPCAM-202ENST00000405271 1530 ntTSL 5 BASIC24.55■■□□□ 1.52
CCDC60Q8IWA6 NKIRAS2-206ENST00000393885 1909 ntAPPRIS P1 TSL 1 (best) BASIC24.55■■□□□ 1.52
CCDC60Q8IWA6 MTX2-201ENST00000249442 1364 ntAPPRIS P1 TSL 1 (best) BASIC24.54■■□□□ 1.52
CCDC60Q8IWA6 FAM136A-201ENST00000037869 1810 ntAPPRIS P1 TSL 1 (best) BASIC24.54■■□□□ 1.52
CCDC60Q8IWA6 CERS4-205ENST00000558331 1803 ntTSL 5 BASIC24.54■■□□□ 1.52
CCDC60Q8IWA6 MBOAT7-205ENST00000431666 2471 ntTSL 1 (best) BASIC24.54■■□□□ 1.52
CCDC60Q8IWA6 MPND-202ENST00000359935 1475 ntAPPRIS ALT2 TSL 2 BASIC24.54■■□□□ 1.52
CCDC60Q8IWA6 AC009506.1-201ENST00000418474 1494 ntTSL 2 BASIC24.54■■□□□ 1.52
CCDC60Q8IWA6 FAM219A-202ENST00000379078 770 ntTSL 3 BASIC24.54■■□□□ 1.52
CCDC60Q8IWA6 FAM219A-205ENST00000379084 893 ntTSL 5 BASIC24.54■■□□□ 1.52
CCDC60Q8IWA6 POLR2F-203ENST00000407936 582 ntTSL 3 BASIC24.54■■□□□ 1.52
CCDC60Q8IWA6 POLR2F-207ENST00000460648 518 ntTSL 4 BASIC24.54■■□□□ 1.52
CCDC60Q8IWA6 BCAP29-209ENST00000465919 942 ntTSL 2 BASIC24.54■■□□□ 1.52
CCDC60Q8IWA6 POLR2E-214ENST00000619917 932 ntTSL 5 BASIC24.54■■□□□ 1.52
CCDC60Q8IWA6 AC105233.4-201ENST00000642045 216 ntBASIC24.54■■□□□ 1.52
CCDC60Q8IWA6 FBXL22-201ENST00000360587 1526 ntAPPRIS P2 TSL 1 (best) BASIC24.54■■□□□ 1.52
CCDC60Q8IWA6 ETS1-201ENST00000319397 2231 ntAPPRIS P1 TSL 1 (best) BASIC24.54■■□□□ 1.52
CCDC60Q8IWA6 CLN3-207ENST00000395653 1430 ntTSL 5 BASIC24.53■■□□□ 1.52
CCDC60Q8IWA6 RELL2-205ENST00000518856 1419 ntTSL 5 BASIC24.53■■□□□ 1.52
CCDC60Q8IWA6 SMAD1-201ENST00000302085 1966 ntAPPRIS P1 TSL 1 (best) BASIC24.53■■□□□ 1.52
CCDC60Q8IWA6 CACNB1-203ENST00000394310 1753 ntAPPRIS ALT1 TSL 1 (best) BASIC24.53■■□□□ 1.52
CCDC60Q8IWA6 PCMT1-201ENST00000367378 1293 ntAPPRIS P3 TSL 1 (best) BASIC24.53■■□□□ 1.52
CCDC60Q8IWA6 RTCA-202ENST00000370126 538 ntTSL 1 (best) BASIC24.53■■□□□ 1.52
CCDC60Q8IWA6 TMEM61-201ENST00000371268 1097 ntAPPRIS P1 TSL 1 (best) BASIC24.53■■□□□ 1.52
CCDC60Q8IWA6 ASPDH-202ENST00000389208 1040 ntAPPRIS P1 TSL 5 BASIC24.53■■□□□ 1.52
CCDC60Q8IWA6 LRRC75A-AS1-202ENST00000470491 1057 ntTSL 1 (best) BASIC24.53■■□□□ 1.52
CCDC60Q8IWA6 AC068587.7-201ENST00000641602 218 ntBASIC24.53■■□□□ 1.52
CCDC60Q8IWA6 PLEKHJ1-206ENST00000587962 1311 ntTSL 2 BASIC24.53■■□□□ 1.52
CCDC60Q8IWA6 ZDHHC16-203ENST00000353979 1647 ntTSL 1 (best) BASIC24.53■■□□□ 1.52
CCDC60Q8IWA6 UTS2R-201ENST00000313135 1357 ntAPPRIS P1 BASIC24.53■■□□□ 1.52
CCDC60Q8IWA6 SLC22A17-201ENST00000206544 2284 ntAPPRIS P4 TSL 1 (best) BASIC24.52■■□□□ 1.52
CCDC60Q8IWA6 PTP4A3-204ENST00000521578 1717 ntAPPRIS P1 TSL 5 BASIC24.52■■□□□ 1.52
CCDC60Q8IWA6 MAPK8IP1P2-201ENST00000580257 1472 ntBASIC24.52■■□□□ 1.52
CCDC60Q8IWA6 AL162430.1-201ENST00000480705 870 ntBASIC24.52■■□□□ 1.52
CCDC60Q8IWA6 LDB1-201ENST00000361198 2285 ntAPPRIS P1 TSL 1 (best) BASIC24.52■■□□□ 1.52
CCDC60Q8IWA6 IGFBP1-201ENST00000275525 1653 ntAPPRIS P2 TSL 1 (best) BASIC24.52■■□□□ 1.52
CCDC60Q8IWA6 DDN-AS1-202ENST00000547866 2114 ntTSL 3 BASIC24.52■■□□□ 1.52
CCDC60Q8IWA6 CAPG-201ENST00000263867 1442 ntAPPRIS P1 TSL 1 (best) BASIC24.52■■□□□ 1.52
CCDC60Q8IWA6 XPA-201ENST00000375128 1417 ntAPPRIS P1 TSL 1 (best) BASIC24.52■■□□□ 1.52
CCDC60Q8IWA6 PICK1-202ENST00000404072 2164 ntAPPRIS P1 TSL 2 BASIC24.52■■□□□ 1.52
CCDC60Q8IWA6 HACD1-201ENST00000326961 773 ntTSL 2 BASIC24.51■■□□□ 1.51
CCDC60Q8IWA6 ZFAS1-206ENST00000450535 1075 ntTSL 3 BASIC24.51■■□□□ 1.51
CCDC60Q8IWA6 RAB43-208ENST00000615093 783 ntTSL 5 BASIC24.51■■□□□ 1.51
CCDC60Q8IWA6 DAZAP1-201ENST00000233078 2160 ntAPPRIS P2 TSL 1 (best) BASIC24.51■■□□□ 1.51
CCDC60Q8IWA6 KLC1-201ENST00000246489 2294 ntAPPRIS P1 TSL 5 BASIC24.51■■□□□ 1.51
CCDC60Q8IWA6 KLC1-224ENST00000557450 2265 ntTSL 5 BASIC24.51■■□□□ 1.51
CCDC60Q8IWA6 CNTD2-202ENST00000430325 1817 ntAPPRIS P2 TSL 2 BASIC24.51■■□□□ 1.51
CCDC60Q8IWA6 CASP9-203ENST00000375890 1351 ntTSL 2 BASIC24.51■■□□□ 1.51
CCDC60Q8IWA6 TBR1-202ENST00000410035 1454 ntTSL 2 BASIC24.51■■□□□ 1.51
CCDC60Q8IWA6 NECTIN2-202ENST00000252485 2112 ntAPPRIS P3 TSL 1 (best) BASIC24.5■■□□□ 1.51
CCDC60Q8IWA6 ERF-201ENST00000222329 2698 ntAPPRIS P1 TSL 1 (best) BASIC24.5■■□□□ 1.51
CCDC60Q8IWA6 CDYL-203ENST00000397588 2184 ntAPPRIS P1 TSL 1 (best) BASIC24.5■■□□□ 1.51
CCDC60Q8IWA6 TMEM44-202ENST00000347147 2245 ntAPPRIS P1 TSL 1 (best) BASIC24.5■■□□□ 1.51
CCDC60Q8IWA6 PHPT1-201ENST00000247665 890 ntAPPRIS P1 TSL 1 (best) BASIC24.5■■□□□ 1.51
CCDC60Q8IWA6 PRKCZ-AS1-201ENST00000333854 1253 ntTSL 2 BASIC24.5■■□□□ 1.51
CCDC60Q8IWA6 MRPL14-201ENST00000372014 959 ntAPPRIS P1 TSL 1 (best) BASIC24.5■■□□□ 1.51
CCDC60Q8IWA6 AL355877.1-204ENST00000451482 1078 ntTSL 1 (best) BASIC24.5■■□□□ 1.51
CCDC60Q8IWA6 AC010141.3-201ENST00000456659 717 ntBASIC24.5■■□□□ 1.51
CCDC60Q8IWA6 PYCARD-AS1-201ENST00000561916 1095 ntTSL 2 BASIC24.5■■□□□ 1.51
CCDC60Q8IWA6 EPM2A-209ENST00000638262 2679 ntTSL 1 (best) BASIC24.5■■□□□ 1.51
CCDC60Q8IWA6 SPAG7-205ENST00000573366 1668 ntTSL 3 BASIC24.5■■□□□ 1.51
CCDC60Q8IWA6 P3H3-201ENST00000290510 2632 ntAPPRIS P1 TSL 1 (best) BASIC24.49■■□□□ 1.51
CCDC60Q8IWA6 RAX2-202ENST00000555978 2145 ntAPPRIS P1 TSL 1 (best) BASIC24.49■■□□□ 1.51
CCDC60Q8IWA6 HORMAD2-201ENST00000336726 2187 ntAPPRIS P1 TSL 1 (best) BASIC24.49■■□□□ 1.51
CCDC60Q8IWA6 GADD45G-202ENST00000375769 977 ntTSL 2 BASIC24.49■■□□□ 1.51
CCDC60Q8IWA6 AC123595.1-201ENST00000440769 1046 ntBASIC24.49■■□□□ 1.51
CCDC60Q8IWA6 PEX11G-203ENST00000593942 1345 ntTSL 5 BASIC24.49■■□□□ 1.51
CCDC60Q8IWA6 USP45-205ENST00000472914 1617 ntTSL 5 BASIC24.49■■□□□ 1.51
Retrieved 100 of 98,524 protein–RNA pairs in 23.1 ms