Protein–RNA interactions for Protein: Q7Z3B4

NUP54, Nucleoporin p54, humanhuman

Predictions only

Length 507 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54Q7Z3B4 AC005837.3-201ENST00000612163 286 ntBASIC20.32■□□□□ 0.84
NUP54Q7Z3B4 ME2-208ENST00000638937 2471 ntTSL 5 BASIC20.32■□□□□ 0.84
NUP54Q7Z3B4 OBSL1-214ENST00000603926 5520 ntTSL 5 BASIC20.32■□□□□ 0.84
NUP54Q7Z3B4 SNUPN-201ENST00000308588 1513 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
NUP54Q7Z3B4 DYRK2-202ENST00000344096 8912 ntAPPRIS P4 TSL 1 (best) BASIC20.32■□□□□ 0.84
NUP54Q7Z3B4 HUNK-201ENST00000270112 7385 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
NUP54Q7Z3B4 PARD3-210ENST00000374794 5669 ntAPPRIS ALT2 TSL 1 (best) BASIC20.31■□□□□ 0.84
NUP54Q7Z3B4 ANKLE2-201ENST00000357997 4646 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
NUP54Q7Z3B4 HAS1-201ENST00000222115 2087 ntAPPRIS P3 TSL 1 (best) BASIC20.31■□□□□ 0.84
NUP54Q7Z3B4 MAGED2-206ENST00000375068 2189 ntAPPRIS P2 TSL 1 (best) BASIC20.31■□□□□ 0.84
NUP54Q7Z3B4 PHC2-202ENST00000373418 2550 ntAPPRIS ALT2 TSL 1 (best) BASIC20.31■□□□□ 0.84
NUP54Q7Z3B4 HNRNPUL2-201ENST00000301785 5106 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
NUP54Q7Z3B4 GRAMD4P4-201ENST00000613563 1115 ntBASIC20.31■□□□□ 0.84
NUP54Q7Z3B4 BAG1-212ENST00000641048 1038 ntAPPRIS P3 BASIC20.31■□□□□ 0.84
NUP54Q7Z3B4 BTBD17-201ENST00000375366 1805 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
NUP54Q7Z3B4 CCDC154-201ENST00000389176 2212 ntAPPRIS P5 TSL 5 BASIC20.31■□□□□ 0.84
NUP54Q7Z3B4 PRSS22-201ENST00000161006 1386 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
NUP54Q7Z3B4 ZYX-201ENST00000322764 2493 ntAPPRIS P2 TSL 1 (best) BASIC20.31■□□□□ 0.84
NUP54Q7Z3B4 AL121749.1-201ENST00000635993 1768 ntTSL 5 BASIC20.31■□□□□ 0.84
NUP54Q7Z3B4 LACTBL1-201ENST00000426928 1641 ntAPPRIS P5 TSL 5 BASIC20.31■□□□□ 0.84
NUP54Q7Z3B4 STK19-202ENST00000375333 1557 ntAPPRIS P3 TSL 1 (best) BASIC20.3■□□□□ 0.84
NUP54Q7Z3B4 C1orf122-202ENST00000373043 2229 ntAPPRIS ALT2 TSL 1 (best) BASIC20.3■□□□□ 0.84
NUP54Q7Z3B4 IGF2-AS-201ENST00000381361 2063 ntTSL 2 BASIC20.3■□□□□ 0.84
NUP54Q7Z3B4 PTGES2-202ENST00000338961 2331 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
NUP54Q7Z3B4 AP002761.3-201ENST00000546324 1695 ntTSL 2 BASIC20.3■□□□□ 0.84
NUP54Q7Z3B4 BX842568.3-201ENST00000418104 571 ntBASIC20.3■□□□□ 0.84
NUP54Q7Z3B4 UBE2E2-203ENST00000425792 1248 ntAPPRIS P1 TSL 2 BASIC20.3■□□□□ 0.84
NUP54Q7Z3B4 OR2I1P-207ENST00000453522 948 ntBASIC20.3■□□□□ 0.84
NUP54Q7Z3B4 AC093249.6-202ENST00000568500 1142 ntTSL 2 BASIC20.3■□□□□ 0.84
NUP54Q7Z3B4 UTS2R-201ENST00000313135 1357 ntAPPRIS P1 BASIC20.3■□□□□ 0.84
NUP54Q7Z3B4 SDSL-201ENST00000345635 1397 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
NUP54Q7Z3B4 LLGL2-202ENST00000375227 1374 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
NUP54Q7Z3B4 AC004687.1-201ENST00000579003 1625 ntBASIC20.3■□□□□ 0.84
NUP54Q7Z3B4 RBM42-203ENST00000588161 1609 ntAPPRIS ALT1 TSL 1 (best) BASIC20.3■□□□□ 0.84
NUP54Q7Z3B4 AC109460.3-201ENST00000569969 5296 ntTSL 2 BASIC20.3■□□□□ 0.84
NUP54Q7Z3B4 SLC39A4-202ENST00000301305 2174 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
NUP54Q7Z3B4 KLF9-201ENST00000377126 5175 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
NUP54Q7Z3B4 GCA-201ENST00000233612 1694 ntTSL 2 BASIC20.29■□□□□ 0.84
NUP54Q7Z3B4 MTMR14-206ENST00000420925 1427 ntAPPRIS ALT2 TSL 2 BASIC20.29■□□□□ 0.84
NUP54Q7Z3B4 AC096677.1-201ENST00000454651 1516 ntTSL 2 BASIC20.29■□□□□ 0.84
NUP54Q7Z3B4 TRIR-201ENST00000242784 970 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
NUP54Q7Z3B4 AURKAIP1-204ENST00000378853 875 ntAPPRIS P1 TSL 2 BASIC20.29■□□□□ 0.84
NUP54Q7Z3B4 AC068580.1-201ENST00000446489 252 ntTSL 3 BASIC20.29■□□□□ 0.84
NUP54Q7Z3B4 AL031432.3-201ENST00000607698 485 ntBASIC20.29■□□□□ 0.84
NUP54Q7Z3B4 ABHD6-205ENST00000478253 2482 ntAPPRIS P1 TSL 2 BASIC20.29■□□□□ 0.84
NUP54Q7Z3B4 SMAD1-201ENST00000302085 1966 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
NUP54Q7Z3B4 MRPS2-202ENST00000371785 1640 ntAPPRIS P1 TSL 3 BASIC20.28■□□□□ 0.84
NUP54Q7Z3B4 DTX4-201ENST00000227451 5642 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
NUP54Q7Z3B4 GDI1-204ENST00000447750 2474 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
NUP54Q7Z3B4 GLT8D2-205ENST00000548660 1835 ntAPPRIS P1 TSL 2 BASIC20.28■□□□□ 0.84
NUP54Q7Z3B4 PIKFYVE-203ENST00000392202 2039 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
NUP54Q7Z3B4 STX10-202ENST00000343587 1128 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
NUP54Q7Z3B4 FGF8-204ENST00000347978 823 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
NUP54Q7Z3B4 SNX3-202ENST00000349379 890 ntTSL 2 BASIC20.28■□□□□ 0.84
NUP54Q7Z3B4 SUDS3P1-201ENST00000505831 966 ntBASIC20.28■□□□□ 0.84
NUP54Q7Z3B4 AP006621.3-202ENST00000530083 765 ntTSL 3 BASIC20.28■□□□□ 0.84
NUP54Q7Z3B4 AC233992.3-201ENST00000607491 485 ntBASIC20.28■□□□□ 0.84
NUP54Q7Z3B4 NEDD4L-237ENST00000617539 728 ntTSL 2 BASIC20.28■□□□□ 0.84
NUP54Q7Z3B4 CADPS-202ENST00000357948 5190 ntAPPRIS ALT2 TSL 1 (best) BASIC20.28■□□□□ 0.84
NUP54Q7Z3B4 CACNB1-203ENST00000394310 1753 ntAPPRIS ALT1 TSL 1 (best) BASIC20.28■□□□□ 0.84
NUP54Q7Z3B4 ALG1L9P-201ENST00000508969 2165 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
NUP54Q7Z3B4 HRK-201ENST00000257572 5789 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
NUP54Q7Z3B4 C12orf75-208ENST00000612117 1329 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
NUP54Q7Z3B4 APBB3-204ENST00000358580 2020 ntTSL 5 BASIC20.27■□□□□ 0.84
NUP54Q7Z3B4 AC133561.1-201ENST00000568600 2415 ntBASIC20.27■□□□□ 0.84
NUP54Q7Z3B4 AC098864.1-205ENST00000315302 2260 ntTSL 2 BASIC20.27■□□□□ 0.84
NUP54Q7Z3B4 SERGEF-219ENST00000532265 1124 ntTSL 2 BASIC20.27■□□□□ 0.84
NUP54Q7Z3B4 SCO2-204ENST00000543927 1051 ntAPPRIS P1 TSL 2 BASIC20.27■□□□□ 0.84
NUP54Q7Z3B4 GRK4-206ENST00000504933 1971 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
NUP54Q7Z3B4 STX4-202ENST00000394998 1498 ntTSL 2 BASIC20.26■□□□□ 0.83
NUP54Q7Z3B4 AL161908.1-203ENST00000425370 506 ntTSL 2 BASIC20.26■□□□□ 0.83
NUP54Q7Z3B4 CREB3L2-203ENST00000452463 1105 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
NUP54Q7Z3B4 AC142381.2-201ENST00000566120 298 ntBASIC20.26■□□□□ 0.83
NUP54Q7Z3B4 SRRM2-231ENST00000630499 1207 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
NUP54Q7Z3B4 SPOCK3-222ENST00000512681 1457 ntTSL 2 BASIC20.25■□□□□ 0.83
NUP54Q7Z3B4 RASSF5-202ENST00000579436 2064 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
NUP54Q7Z3B4 KLC1-227ENST00000634686 2229 ntTSL 5 BASIC20.25■□□□□ 0.83
NUP54Q7Z3B4 SLC47A1P1-202ENST00000449666 945 ntBASIC20.25■□□□□ 0.83
NUP54Q7Z3B4 ATP6V0E2-204ENST00000464662 513 ntAPPRIS P1 TSL 2 BASIC20.25■□□□□ 0.83
NUP54Q7Z3B4 AP001330.3-201ENST00000520123 633 ntBASIC20.25■□□□□ 0.83
NUP54Q7Z3B4 AC008764.7-201ENST00000593779 1081 ntBASIC20.25■□□□□ 0.83
NUP54Q7Z3B4 AL136967.2-201ENST00000623968 743 ntBASIC20.25■□□□□ 0.83
NUP54Q7Z3B4 SNCB-206ENST00000614675 1407 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
NUP54Q7Z3B4 KCTD8-201ENST00000360029 2587 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
NUP54Q7Z3B4 SYT8-201ENST00000341958 1556 ntAPPRIS ALT2 TSL 5 BASIC20.25■□□□□ 0.83
NUP54Q7Z3B4 C2CD4B-201ENST00000380392 1579 ntAPPRIS P1 TSL 2 BASIC20.25■□□□□ 0.83
NUP54Q7Z3B4 C7orf25-203ENST00000431882 1645 ntTSL 2 BASIC20.24■□□□□ 0.83
NUP54Q7Z3B4 TSKS-202ENST00000358830 1367 ntAPPRIS ALT2 TSL 1 (best) BASIC20.24■□□□□ 0.83
NUP54Q7Z3B4 LGR4-202ENST00000389858 5163 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
NUP54Q7Z3B4 ADAM22-209ENST00000439864 2576 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
NUP54Q7Z3B4 CRTAC1-202ENST00000370591 2348 ntAPPRIS P2 TSL 5 BASIC20.24■□□□□ 0.83
NUP54Q7Z3B4 ARHGAP27-207ENST00000528273 2319 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
NUP54Q7Z3B4 STK19-201ENST00000375331 1663 ntAPPRIS ALT2 TSL 1 (best) BASIC20.24■□□□□ 0.83
NUP54Q7Z3B4 MAP2K5-204ENST00000395476 1689 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
NUP54Q7Z3B4 CTAG2-202ENST00000369585 748 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
NUP54Q7Z3B4 LIN7B-202ENST00000391864 582 ntTSL 3 BASIC20.24■□□□□ 0.83
NUP54Q7Z3B4 MIR939-201ENST00000401314 82 ntBASIC20.24■□□□□ 0.83
NUP54Q7Z3B4 NDUFAF8-201ENST00000431388 615 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
NUP54Q7Z3B4 AC027682.1-201ENST00000562846 899 ntBASIC20.24■□□□□ 0.83
NUP54Q7Z3B4 AF213884.3-201ENST00000563833 479 ntBASIC20.24■□□□□ 0.83
Retrieved 100 of 98,524 protein–RNA pairs in 74.2 ms