Protein–RNA interactions for Protein: P78527

PRKDC, DNA-dependent protein kinase catalytic subunit, humanhuman

Known RBP Predictions only

Length 4,128 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PRKDCP78527 AC027682.4-201ENST00000605277 798 ntTSL 5 BASIC16.21■□□□□ 0.19
PRKDCP78527 MAPKAPK2-201ENST00000294981 2171 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
PRKDCP78527 MAPKAP1-207ENST00000394060 1586 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
PRKDCP78527 NOXA1-202ENST00000392815 1464 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
PRKDCP78527 NKIRAS2-204ENST00000393880 1644 ntAPPRIS P1 TSL 2 BASIC16.21■□□□□ 0.19
PRKDCP78527 OIP5-201ENST00000220514 1236 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
PRKDCP78527 PUSL1-201ENST00000379031 1287 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
PRKDCP78527 AC021087.1-201ENST00000512642 522 ntTSL 2 BASIC16.21■□□□□ 0.19
PRKDCP78527 HAR1A-201ENST00000433161 1882 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
PRKDCP78527 PEX7-202ENST00000367756 680 ntTSL 3 BASIC16.21■□□□□ 0.19
PRKDCP78527 HYAL2-202ENST00000395139 2136 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
PRKDCP78527 BRI3-207ENST00000539286 699 ntTSL 2 BASIC16.21■□□□□ 0.19
PRKDCP78527 AL390816.2-201ENST00000554252 737 ntTSL 3 BASIC16.21■□□□□ 0.19
PRKDCP78527 SLC6A10P-202ENST00000431994 2058 ntBASIC16.21■□□□□ 0.19
PRKDCP78527 AC064853.3-201ENST00000641801 1658 ntAPPRIS P1 BASIC16.21■□□□□ 0.18
PRKDCP78527 SNAP23-210ENST00000564153 775 ntTSL 2 BASIC16.21■□□□□ 0.18
PRKDCP78527 UCHL5-201ENST00000367448 1534 ntTSL 1 (best) BASIC16.21■□□□□ 0.18
PRKDCP78527 F8A2-201ENST00000369505 1116 ntAPPRIS P1 BASIC16.2■□□□□ 0.18
PRKDCP78527 IGFALS-203ENST00000568221 730 ntTSL 4 BASIC16.2■□□□□ 0.18
PRKDCP78527 SNTB1-202ENST00000517992 2273 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
PRKDCP78527 CKLF-201ENST00000264001 669 ntAPPRIS P4 TSL 1 (best) BASIC16.2■□□□□ 0.18
PRKDCP78527 CLN6-207ENST00000566347 981 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
PRKDCP78527 SMIM8-209ENST00000608868 815 ntAPPRIS P1 TSL 5 BASIC16.2■□□□□ 0.18
PRKDCP78527 ELOC-206ENST00000520242 1573 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
PRKDCP78527 AC138649.1-201ENST00000619611 1449 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
PRKDCP78527 PPP1CA-202ENST00000358239 1054 ntTSL 2 BASIC16.2■□□□□ 0.18
PRKDCP78527 TSTD1-202ENST00000368023 574 ntAPPRIS ALT2 TSL 2 BASIC16.2■□□□□ 0.18
PRKDCP78527 RHOG-202ENST00000396978 1066 ntAPPRIS P1 TSL 3 BASIC16.2■□□□□ 0.18
PRKDCP78527 RTBDN-203ENST00000458671 1066 ntAPPRIS ALT2 TSL 1 (best) BASIC16.2■□□□□ 0.18
PRKDCP78527 AP004608.1-201ENST00000531319 1402 ntTSL 2 BASIC16.2■□□□□ 0.18
PRKDCP78527 LIPT2-201ENST00000310109 1018 ntAPPRIS P1 TSL 2 BASIC16.19■□□□□ 0.18
PRKDCP78527 CUEDC1-201ENST00000360238 2193 ntAPPRIS P1 TSL 2 BASIC16.19■□□□□ 0.18
PRKDCP78527 CREB3L3-202ENST00000595923 1491 ntAPPRIS ALT2 TSL 1 (best) BASIC16.19■□□□□ 0.18
PRKDCP78527 ADORA2B-201ENST00000304222 1735 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
PRKDCP78527 VWA1-201ENST00000338660 2147 ntTSL 2 BASIC16.19■□□□□ 0.18
PRKDCP78527 FNDC11-201ENST00000370097 1119 ntAPPRIS P1 TSL 2 BASIC16.19■□□□□ 0.18
PRKDCP78527 LINC01023-201ENST00000606054 436 ntBASIC16.19■□□□□ 0.18
PRKDCP78527 AL160396.2-202ENST00000636692 566 ntAPPRIS ALT2 TSL 5 BASIC16.19■□□□□ 0.18
PRKDCP78527 TXNL4A-203ENST00000585474 1185 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
PRKDCP78527 CCZ1B-215ENST00000626257 2211 ntTSL 2 BASIC16.19■□□□□ 0.18
PRKDCP78527 FLT1-202ENST00000539099 1911 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
PRKDCP78527 CAPZB-203ENST00000375142 1686 ntAPPRIS ALT1 TSL 5 BASIC16.18■□□□□ 0.18
PRKDCP78527 RCN1P1-201ENST00000400413 996 ntBASIC16.18■□□□□ 0.18
PRKDCP78527 SMIM1-201ENST00000444870 546 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
PRKDCP78527 MME-217ENST00000616757 1315 ntTSL 5 BASIC16.18■□□□□ 0.18
PRKDCP78527 IMPA2-201ENST00000269159 1534 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
PRKDCP78527 LRRC3C-201ENST00000377924 891 ntAPPRIS P1 TSL 3 BASIC16.18■□□□□ 0.18
PRKDCP78527 C2orf82-203ENST00000409533 561 ntAPPRIS P2 TSL 4 BASIC16.18■□□□□ 0.18
PRKDCP78527 PDCD6-206ENST00000507528 1088 ntAPPRIS ALT1 TSL 1 (best) BASIC16.18■□□□□ 0.18
PRKDCP78527 AL049874.3-201ENST00000557618 868 ntTSL 3 BASIC16.18■□□□□ 0.18
PRKDCP78527 IRX5-204ENST00000560154 879 ntTSL 5 BASIC16.18■□□□□ 0.18
PRKDCP78527 FAM219B-212ENST00000565772 1249 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
PRKDCP78527 IRX5-205ENST00000620085 881 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
PRKDCP78527 SLC35A2-210ENST00000616181 1614 ntTSL 2 BASIC16.18■□□□□ 0.18
PRKDCP78527 CYHR1-201ENST00000306145 1409 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
PRKDCP78527 TTC9B-201ENST00000311308 843 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
PRKDCP78527 ESRRAP1-201ENST00000400596 1257 ntBASIC16.18■□□□□ 0.18
PRKDCP78527 POLR2F-203ENST00000407936 582 ntTSL 3 BASIC16.18■□□□□ 0.18
PRKDCP78527 POLR2F-207ENST00000460648 518 ntTSL 4 BASIC16.18■□□□□ 0.18
PRKDCP78527 AC127029.2-201ENST00000577329 502 ntTSL 3 BASIC16.18■□□□□ 0.18
PRKDCP78527 ELAC1-204ENST00000591429 975 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
PRKDCP78527 OSCAR-205ENST00000359649 1892 ntAPPRIS P4 TSL 2 BASIC16.18■□□□□ 0.18
PRKDCP78527 ZNF511-202ENST00000361518 1520 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
PRKDCP78527 MKRN4P-201ENST00000444706 1521 ntBASIC16.18■□□□□ 0.18
PRKDCP78527 MAD2L2-201ENST00000235310 1860 ntAPPRIS P1 TSL 2 BASIC16.18■□□□□ 0.18
PRKDCP78527 PHPT1-201ENST00000247665 890 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
PRKDCP78527 AL360181.5-201ENST00000368554 1044 ntAPPRIS P1 TSL 2 BASIC16.17■□□□□ 0.18
PRKDCP78527 ZCCHC9-204ENST00000438268 1248 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
PRKDCP78527 AC012313.1-203ENST00000597980 570 ntTSL 4 BASIC16.17■□□□□ 0.18
PRKDCP78527 ALDH3A2-224ENST00000626500 995 ntTSL 5 BASIC16.17■□□□□ 0.18
PRKDCP78527 TANGO2-214ENST00000447208 2086 ntTSL 3 BASIC16.17■□□□□ 0.18
PRKDCP78527 CLK2-203ENST00000368361 2166 ntAPPRIS ALT1 TSL 1 (best) BASIC16.17■□□□□ 0.18
PRKDCP78527 CHST13-201ENST00000319340 1789 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
PRKDCP78527 LHPP-201ENST00000368839 1522 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
PRKDCP78527 TRA2B-203ENST00000382191 976 ntTSL 2 BASIC16.17■□□□□ 0.18
PRKDCP78527 ABHD14A-204ENST00000491470 674 ntTSL 3 BASIC16.17■□□□□ 0.18
PRKDCP78527 AC010501.1-201ENST00000606270 1962 ntBASIC16.17■□□□□ 0.18
PRKDCP78527 GGTA1P-203ENST00000481799 1487 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
PRKDCP78527 GGTLC1-202ENST00000286890 1028 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
PRKDCP78527 C6orf132-202ENST00000356542 894 ntAPPRIS ALT2 TSL 2 BASIC16.17■□□□□ 0.18
PRKDCP78527 AC142381.4-202ENST00000563973 229 ntBASIC16.17■□□□□ 0.18
PRKDCP78527 COL13A1-213ENST00000520267 2276 ntAPPRIS ALT2 TSL 5 BASIC16.17■□□□□ 0.18
PRKDCP78527 MBNL3-202ENST00000370844 1643 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
PRKDCP78527 TWF2-201ENST00000305533 1718 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
PRKDCP78527 VKORC1-202ENST00000319788 1077 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
PRKDCP78527 AC073111.3-201ENST00000478789 635 ntAPPRIS P1 TSL 3 BASIC16.17■□□□□ 0.18
PRKDCP78527 MNX1-AS1-201ENST00000480284 1041 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
PRKDCP78527 MYO19-221ENST00000620640 1186 ntTSL 2 BASIC16.17■□□□□ 0.18
PRKDCP78527 MAPK14-210ENST00000622903 1003 ntTSL 5 BASIC16.17■□□□□ 0.18
PRKDCP78527 NIPSNAP2-205ENST00000446778 1882 ntTSL 2 BASIC16.17■□□□□ 0.18
PRKDCP78527 SMUG1-215ENST00000508394 1697 ntAPPRIS P1 TSL 2 BASIC16.16■□□□□ 0.18
PRKDCP78527 AP002761.3-201ENST00000546324 1695 ntTSL 2 BASIC16.16■□□□□ 0.18
PRKDCP78527 CKMT1B-207ENST00000441322 1747 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
PRKDCP78527 TESC-201ENST00000335209 1041 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
PRKDCP78527 LYRM9-201ENST00000379102 501 ntAPPRIS P1 TSL 2 BASIC16.16■□□□□ 0.18
PRKDCP78527 HDAC11-205ENST00000404548 577 ntTSL 4 BASIC16.16■□□□□ 0.18
PRKDCP78527 LYRM9-206ENST00000508862 807 ntTSL 3 BASIC16.16■□□□□ 0.18
PRKDCP78527 ACYP1-205ENST00000555463 789 ntTSL 2 BASIC16.16■□□□□ 0.18
PRKDCP78527 CDH24-206ENST00000610348 2037 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
PRKDCP78527 SLC25A6-201ENST00000381401 2062 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
Retrieved 100 of 98,524 protein–RNA pairs in 27.8 ms