Protein–RNA interactions for Protein: P48436

SOX9, Transcription factor SOX-9, humanhuman

Predictions only

Length 509 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX9P48436 CDCA4P2-201ENST00000441182 718 ntBASIC22.58■■□□□ 1.21
SOX9P48436 YIF1A-205ENST00000471387 854 ntTSL 5 BASIC22.58■■□□□ 1.21
SOX9P48436 ZNF696-205ENST00000521537 705 ntTSL 2 BASIC22.58■■□□□ 1.21
SOX9P48436 RAP2CP1-201ENST00000605103 478 ntBASIC22.58■■□□□ 1.21
SOX9P48436 RNF114-202ENST00000622920 1284 ntTSL 5 BASIC22.58■■□□□ 1.21
SOX9P48436 AC073111.5-205ENST00000641717 521 ntBASIC22.58■■□□□ 1.21
SOX9P48436 SEC22C-207ENST00000423701 1458 ntTSL 1 (best) BASIC22.58■■□□□ 1.2
SOX9P48436 AC135048.1-201ENST00000566056 1318 ntTSL 2 BASIC22.57■■□□□ 1.2
SOX9P48436 FAM185A-201ENST00000409231 1446 ntAPPRIS ALT2 TSL 2 BASIC22.57■■□□□ 1.2
SOX9P48436 SHD-204ENST00000599689 1729 ntTSL 5 BASIC22.57■■□□□ 1.2
SOX9P48436 HOXA4-204ENST00000610970 1728 ntAPPRIS P1 TSL 1 (best) BASIC22.57■■□□□ 1.2
SOX9P48436 HSD17B14-201ENST00000263278 1238 ntAPPRIS P1 TSL 1 (best) BASIC22.57■■□□□ 1.2
SOX9P48436 AC073343.2-201ENST00000413182 548 ntTSL 4 BASIC22.57■■□□□ 1.2
SOX9P48436 POLE4-205ENST00000483063 1248 ntAPPRIS P1 TSL 1 (best) BASIC22.57■■□□□ 1.2
SOX9P48436 ARHGAP24-206ENST00000503995 1273 ntTSL 1 (best) BASIC22.57■■□□□ 1.2
SOX9P48436 AC092368.3-201ENST00000562549 1107 ntTSL 5 BASIC22.57■■□□□ 1.2
SOX9P48436 FIZ1-205ENST00000592585 489 ntTSL 5 BASIC22.57■■□□□ 1.2
SOX9P48436 CDX1-201ENST00000231656 1758 ntAPPRIS P1 TSL 1 (best) BASIC22.57■■□□□ 1.2
SOX9P48436 CCND3-202ENST00000372988 2133 ntTSL 1 (best) BASIC22.57■■□□□ 1.2
SOX9P48436 EI24-211ENST00000534546 1544 ntTSL 2 BASIC22.57■■□□□ 1.2
SOX9P48436 SMOX-201ENST00000278795 2164 ntTSL 1 (best) BASIC22.56■■□□□ 1.2
SOX9P48436 AC020928.2-201ENST00000588717 2197 ntBASIC22.56■■□□□ 1.2
SOX9P48436 TBC1D22A-202ENST00000355704 1886 ntTSL 1 (best) BASIC22.56■■□□□ 1.2
SOX9P48436 CBWD5-207ENST00000382405 1791 ntAPPRIS P1 TSL 1 (best) BASIC22.56■■□□□ 1.2
SOX9P48436 SRR-201ENST00000344595 2728 ntAPPRIS P1 TSL 1 (best) BASIC22.56■■□□□ 1.2
SOX9P48436 PLEKHF1-204ENST00000592810 1357 ntAPPRIS P1 TSL 1 (best) BASIC22.56■■□□□ 1.2
SOX9P48436 URAD-201ENST00000332715 931 ntAPPRIS P1 TSL 5 BASIC22.56■■□□□ 1.2
SOX9P48436 AC084116.4-201ENST00000524320 484 ntTSL 2 BASIC22.56■■□□□ 1.2
SOX9P48436 AC091138.1-202ENST00000578967 457 ntTSL 2 BASIC22.56■■□□□ 1.2
SOX9P48436 SH3GL1-201ENST00000269886 2516 ntAPPRIS P1 TSL 1 (best) BASIC22.56■■□□□ 1.2
SOX9P48436 LRRC34-206ENST00000522526 1899 ntAPPRIS P3 TSL 1 (best) BASIC22.56■■□□□ 1.2
SOX9P48436 SNTA1-201ENST00000217381 2342 ntAPPRIS P1 TSL 1 (best) BASIC22.56■■□□□ 1.2
SOX9P48436 GP1BB-201ENST00000366425 1553 ntAPPRIS P1 TSL 1 (best) BASIC22.55■■□□□ 1.2
SOX9P48436 GATA1-202ENST00000376670 1497 ntAPPRIS P1 TSL 1 (best) BASIC22.55■■□□□ 1.2
SOX9P48436 RAB40B-201ENST00000269347 2189 ntTSL 2 BASIC22.55■■□□□ 1.2
SOX9P48436 ACYP1-205ENST00000555463 789 ntTSL 2 BASIC22.55■■□□□ 1.2
SOX9P48436 MRPS2-202ENST00000371785 1640 ntAPPRIS P1 TSL 3 BASIC22.55■■□□□ 1.2
SOX9P48436 BX005040.4-201ENST00000637145 1518 ntBASIC22.55■■□□□ 1.2
SOX9P48436 AL591684.2-201ENST00000605970 1594 ntTSL 5 BASIC22.55■■□□□ 1.2
SOX9P48436 CHST6-202ENST00000390664 2093 ntAPPRIS P1 TSL 1 (best) BASIC22.54■■□□□ 1.2
SOX9P48436 AMIGO1-201ENST00000369862 2229 ntAPPRIS P1 TSL 5 BASIC22.54■■□□□ 1.2
SOX9P48436 ESRRA-203ENST00000406310 2218 ntAPPRIS ALT1 TSL 1 (best) BASIC22.54■■□□□ 1.2
SOX9P48436 KRT10-201ENST00000269576 2124 ntAPPRIS P1 TSL 1 (best) BASIC22.54■■□□□ 1.2
SOX9P48436 TCP1-202ENST00000392168 1878 ntTSL 5 BASIC22.54■■□□□ 1.2
SOX9P48436 ORAI3-204ENST00000566237 1393 ntTSL 5 BASIC22.54■■□□□ 1.2
SOX9P48436 AZIN2-204ENST00000373443 2048 ntAPPRIS P1 TSL 1 (best) BASIC22.54■■□□□ 1.2
SOX9P48436 BCKDHB-203ENST00000369760 743 ntTSL 3 BASIC22.54■■□□□ 1.2
SOX9P48436 HSCB-202ENST00000398941 955 ntTSL 2 BASIC22.54■■□□□ 1.2
SOX9P48436 VGLL4-208ENST00000424529 1025 ntTSL 1 (best) BASIC22.54■■□□□ 1.2
SOX9P48436 AC092468.1-201ENST00000491321 562 ntTSL 4 BASIC22.54■■□□□ 1.2
SOX9P48436 TMEM41B-205ENST00000533723 723 ntTSL 2 BASIC22.54■■□□□ 1.2
SOX9P48436 LINC02091-201ENST00000576171 1185 ntTSL 5 BASIC22.54■■□□□ 1.2
SOX9P48436 CPLX1-201ENST00000304062 2181 ntAPPRIS P1 TSL 1 (best) BASIC22.53■■□□□ 1.2
SOX9P48436 ALDH16A1-203ENST00000540132 2174 ntTSL 2 BASIC22.53■■□□□ 1.2
SOX9P48436 MSX2-201ENST00000239243 2241 ntAPPRIS P1 TSL 1 (best) BASIC22.53■■□□□ 1.2
SOX9P48436 REXO4-202ENST00000371942 2360 ntAPPRIS P1 TSL 1 (best) BASIC22.53■■□□□ 1.2
SOX9P48436 UCHL1-201ENST00000284440 1172 ntAPPRIS P1 TSL 1 (best) BASIC22.53■■□□□ 1.2
SOX9P48436 ADAMTS13-204ENST00000371911 1155 ntTSL 1 (best) BASIC22.53■■□□□ 1.2
SOX9P48436 TNFRSF18-203ENST00000379268 1179 ntAPPRIS ALT2 TSL 1 (best) BASIC22.53■■□□□ 1.2
SOX9P48436 UCHL1-210ENST00000512788 785 ntTSL 3 BASIC22.53■■□□□ 1.2
SOX9P48436 IDH2-203ENST00000559482 1278 ntTSL 5 BASIC22.53■■□□□ 1.2
SOX9P48436 Z97986.1-201ENST00000565879 476 ntTSL 5 BASIC22.53■■□□□ 1.2
SOX9P48436 CFP-202ENST00000377005 1435 ntAPPRIS ALT2 TSL 1 (best) BASIC22.53■■□□□ 1.2
SOX9P48436 HECA-201ENST00000367658 5614 ntAPPRIS P1 TSL 1 (best) BASIC22.53■■□□□ 1.2
SOX9P48436 FAM120B-204ENST00000625626 1794 ntAPPRIS ALT2 TSL 2 BASIC22.53■■□□□ 1.2
SOX9P48436 H1FX-201ENST00000333762 1507 ntAPPRIS P1 BASIC22.52■■□□□ 1.2
SOX9P48436 UBA5-208ENST00000473651 1513 ntTSL 5 BASIC22.52■■□□□ 1.2
SOX9P48436 RPS6-203ENST00000380384 1355 ntTSL 1 (best) BASIC22.52■■□□□ 1.2
SOX9P48436 HTATIP2-204ENST00000451739 1748 ntAPPRIS P1 TSL 1 (best) BASIC22.52■■□□□ 1.2
SOX9P48436 PTP4A3-204ENST00000521578 1717 ntAPPRIS P1 TSL 5 BASIC22.52■■□□□ 1.2
SOX9P48436 NELFB-201ENST00000343053 2698 ntAPPRIS ALT2 TSL 1 (best) BASIC22.52■■□□□ 1.2
SOX9P48436 MIS18A-201ENST00000290130 1575 ntAPPRIS P1 TSL 1 (best) BASIC22.52■■□□□ 1.2
SOX9P48436 ABHD14A-202ENST00000458031 1113 ntTSL 5 BASIC22.52■■□□□ 1.2
SOX9P48436 NDUFA6-AS1-207ENST00000595777 833 ntTSL 5 BASIC22.52■■□□□ 1.2
SOX9P48436 AC012313.1-203ENST00000597980 570 ntTSL 4 BASIC22.52■■□□□ 1.2
SOX9P48436 HACD3-205ENST00000562901 1797 ntTSL 5 BASIC22.52■■□□□ 1.2
SOX9P48436 SPOCK3-222ENST00000512681 1457 ntTSL 2 BASIC22.52■■□□□ 1.2
SOX9P48436 KCTD5-201ENST00000301738 2482 ntAPPRIS P1 TSL 1 (best) BASIC22.52■■□□□ 1.2
SOX9P48436 SCAMP3-202ENST00000355379 1537 ntTSL 1 (best) BASIC22.52■■□□□ 1.19
SOX9P48436 LINC01124-201ENST00000409786 2117 ntBASIC22.51■■□□□ 1.19
SOX9P48436 AC092171.1-201ENST00000455866 753 ntTSL 2 BASIC22.51■■□□□ 1.19
SOX9P48436 SMUG1P1-201ENST00000590640 811 ntBASIC22.51■■□□□ 1.19
SOX9P48436 RPS15-210ENST00000592623 873 ntTSL 1 (best) BASIC22.51■■□□□ 1.19
SOX9P48436 KCNIP1-203ENST00000390656 2249 ntTSL 5 BASIC22.51■■□□□ 1.19
SOX9P48436 AC004812.2-201ENST00000611079 2094 ntBASIC22.51■■□□□ 1.19
SOX9P48436 AP000802.1-201ENST00000500537 1934 ntTSL 1 (best) BASIC22.51■■□□□ 1.19
SOX9P48436 ZNF419-203ENST00000354197 1569 ntTSL 5 BASIC22.5■■□□□ 1.19
SOX9P48436 IL17RE-203ENST00000421412 2158 ntAPPRIS ALT2 TSL 1 (best) BASIC22.5■■□□□ 1.19
SOX9P48436 CYHR1-201ENST00000306145 1409 ntTSL 1 (best) BASIC22.5■■□□□ 1.19
SOX9P48436 ARRDC1-AS1-201ENST00000371417 1409 ntTSL 1 (best) BASIC22.5■■□□□ 1.19
SOX9P48436 SMUG1-215ENST00000508394 1697 ntAPPRIS P1 TSL 2 BASIC22.5■■□□□ 1.19
SOX9P48436 PHPT1-201ENST00000247665 890 ntAPPRIS P1 TSL 1 (best) BASIC22.5■■□□□ 1.19
SOX9P48436 MT1M-201ENST00000379818 829 ntAPPRIS P1 TSL 1 (best) BASIC22.5■■□□□ 1.19
SOX9P48436 RASL12-202ENST00000421977 1523 ntTSL 2 BASIC22.5■■□□□ 1.19
SOX9P48436 BLOC1S4-201ENST00000320776 1617 ntAPPRIS P1 BASIC22.49■■□□□ 1.19
SOX9P48436 HNF4A-205ENST00000443598 1603 ntTSL 1 (best) BASIC22.49■■□□□ 1.19
SOX9P48436 PDIA2-201ENST00000219406 1698 ntAPPRIS P2 TSL 1 (best) BASIC22.49■■□□□ 1.19
SOX9P48436 AL353803.4-201ENST00000565882 1934 ntBASIC22.49■■□□□ 1.19
SOX9P48436 HCFC1R1-201ENST00000248089 965 ntTSL 1 (best) BASIC22.49■■□□□ 1.19
SOX9P48436 HCFC1R1-207ENST00000574980 845 ntTSL 5 BASIC22.49■■□□□ 1.19
Retrieved 100 of 98,524 protein–RNA pairs in 29.2 ms