Protein–RNA interactions for Protein: P34896

SHMT1, Serine hydroxymethyltransferase, cytosolic, humanhuman

Predictions only

Length 483 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1P34896 SLC35A2-205ENST00000376529 865 ntTSL 3 BASIC25.92■■□□□ 1.74
SHMT1P34896 ZNF696-205ENST00000521537 705 ntTSL 2 BASIC25.92■■□□□ 1.74
SHMT1P34896 RPLP2-207ENST00000530797 637 ntAPPRIS P1 TSL 1 (best) BASIC25.92■■□□□ 1.74
SHMT1P34896 AC022517.1-201ENST00000592429 346 ntBASIC25.92■■□□□ 1.74
SHMT1P34896 IKBKGP1-201ENST00000612193 1073 ntBASIC25.92■■□□□ 1.74
SHMT1P34896 H2AFB3-201ENST00000615853 591 ntAPPRIS P1 BASIC25.92■■□□□ 1.74
SHMT1P34896 AC068587.7-201ENST00000641602 218 ntBASIC25.92■■□□□ 1.74
SHMT1P34896 CAPN10-207ENST00000391984 2644 ntAPPRIS P2 TSL 1 (best) BASIC25.92■■□□□ 1.74
SHMT1P34896 DONSON-204ENST00000432378 1618 ntTSL 5 BASIC25.92■■□□□ 1.74
SHMT1P34896 LMTK3-202ENST00000600059 5113 ntAPPRIS ALT2 TSL 2 BASIC25.92■■□□□ 1.74
SHMT1P34896 RAD21L1-202ENST00000402452 1707 ntTSL 5 BASIC25.91■■□□□ 1.74
SHMT1P34896 AP1S1-201ENST00000337619 1306 ntAPPRIS P1 TSL 1 (best) BASIC25.91■■□□□ 1.74
SHMT1P34896 EEF1D-256ENST00000618139 2238 ntTSL 5 BASIC25.91■■□□□ 1.74
SHMT1P34896 SPI1-202ENST00000378538 1403 ntAPPRIS P3 TSL 1 (best) BASIC25.91■■□□□ 1.74
SHMT1P34896 SPI1-201ENST00000227163 1168 ntAPPRIS ALT1 TSL 2 BASIC25.91■■□□□ 1.74
SHMT1P34896 TNFRSF10B-202ENST00000347739 1723 ntAPPRIS ALT2 TSL 1 (best) BASIC25.91■■□□□ 1.74
SHMT1P34896 ST3GAL4-202ENST00000356132 1745 ntTSL 5 BASIC25.91■■□□□ 1.74
SHMT1P34896 PTP4A3-204ENST00000521578 1717 ntAPPRIS P1 TSL 5 BASIC25.91■■□□□ 1.74
SHMT1P34896 RASSF5-202ENST00000579436 2064 ntAPPRIS P1 TSL 1 (best) BASIC25.91■■□□□ 1.74
SHMT1P34896 BSPRY-201ENST00000374183 2339 ntAPPRIS P1 TSL 1 (best) BASIC25.9■■□□□ 1.74
SHMT1P34896 C5orf38-201ENST00000334000 890 ntAPPRIS P3 TSL 1 (best) BASIC25.9■■□□□ 1.74
SHMT1P34896 AC104986.2-201ENST00000521696 380 ntTSL 2 BASIC25.9■■□□□ 1.74
SHMT1P34896 AP001005.4-202ENST00000575325 560 ntTSL 4 BASIC25.9■■□□□ 1.74
SHMT1P34896 STX4-201ENST00000313843 1481 ntAPPRIS P1 TSL 1 (best) BASIC25.9■■□□□ 1.74
SHMT1P34896 EN1-201ENST00000295206 2457 ntAPPRIS P1 TSL 2 BASIC25.9■■□□□ 1.74
SHMT1P34896 ANKRD11-217ENST00000613312 1584 ntAPPRIS ALT2 TSL 5 BASIC25.9■■□□□ 1.74
SHMT1P34896 RBM42-203ENST00000588161 1609 ntAPPRIS ALT1 TSL 1 (best) BASIC25.89■■□□□ 1.74
SHMT1P34896 NDUFS3-201ENST00000263774 958 ntAPPRIS P1 TSL 1 (best) BASIC25.89■■□□□ 1.74
SHMT1P34896 MFF-208ENST00000409616 1247 ntTSL 5 BASIC25.89■■□□□ 1.74
SHMT1P34896 ELANE-202ENST00000590230 1028 ntAPPRIS P1 TSL 5 BASIC25.89■■□□□ 1.74
SHMT1P34896 TPRG1LP1-201ENST00000598702 760 ntBASIC25.89■■□□□ 1.74
SHMT1P34896 ZNF213-208ENST00000576416 2240 ntAPPRIS P1 TSL 2 BASIC25.89■■□□□ 1.74
SHMT1P34896 SEC22C-207ENST00000423701 1458 ntTSL 1 (best) BASIC25.89■■□□□ 1.73
SHMT1P34896 HOMER3-204ENST00000539827 1979 ntAPPRIS P3 TSL 1 (best) BASIC25.89■■□□□ 1.73
SHMT1P34896 ADGRB2-204ENST00000398542 5176 ntTSL 5 BASIC25.89■■□□□ 1.73
SHMT1P34896 PLEKHJ1-206ENST00000587962 1311 ntTSL 2 BASIC25.88■■□□□ 1.73
SHMT1P34896 RASD1-202ENST00000579152 1404 ntTSL 2 BASIC25.88■■□□□ 1.73
SHMT1P34896 NFKBID-201ENST00000396901 1834 ntAPPRIS P2 TSL 1 (best) BASIC25.88■■□□□ 1.73
SHMT1P34896 NFKBID-211ENST00000641389 1834 ntAPPRIS ALT2 BASIC25.88■■□□□ 1.73
SHMT1P34896 MRPL38-201ENST00000309352 1888 ntAPPRIS P1 TSL 1 (best) BASIC25.88■■□□□ 1.73
SHMT1P34896 EIF3J-202ENST00000424492 1550 ntTSL 4 BASIC25.88■■□□□ 1.73
SHMT1P34896 RNF208-201ENST00000391553 1077 ntAPPRIS P1 BASIC25.88■■□□□ 1.73
SHMT1P34896 RNF208-202ENST00000392827 1135 ntAPPRIS P1 TSL 5 BASIC25.88■■□□□ 1.73
SHMT1P34896 KRTAP5-2-201ENST00000412090 1118 ntAPPRIS P1 BASIC25.88■■□□□ 1.73
SHMT1P34896 AC010141.3-201ENST00000456659 717 ntBASIC25.88■■□□□ 1.73
SHMT1P34896 BRD2-214ENST00000496118 735 ntTSL 1 (best) BASIC25.88■■□□□ 1.73
SHMT1P34896 GLI4-210ENST00000523522 1297 ntAPPRIS P1 TSL 1 (best) BASIC25.88■■□□□ 1.73
SHMT1P34896 AC145207.2-202ENST00000576554 565 ntTSL 5 BASIC25.88■■□□□ 1.73
SHMT1P34896 MIF4GD-211ENST00000580571 952 ntTSL 2 BASIC25.88■■□□□ 1.73
SHMT1P34896 AC092437.1-201ENST00000624794 1048 ntBASIC25.88■■□□□ 1.73
SHMT1P34896 DACT3-202ENST00000391916 2834 ntAPPRIS P1 TSL 5 BASIC25.88■■□□□ 1.73
SHMT1P34896 SIX3-201ENST00000260653 2523 ntAPPRIS P1 TSL 1 (best) BASIC25.88■■□□□ 1.73
SHMT1P34896 AZIN2-204ENST00000373443 2048 ntAPPRIS P1 TSL 1 (best) BASIC25.88■■□□□ 1.73
SHMT1P34896 ROGDI-201ENST00000322048 1735 ntAPPRIS P1 TSL 1 (best) BASIC25.88■■□□□ 1.73
SHMT1P34896 EGR3-203ENST00000519492 1500 ntTSL 5 BASIC25.88■■□□□ 1.73
SHMT1P34896 CYHR1-201ENST00000306145 1409 ntTSL 1 (best) BASIC25.88■■□□□ 1.73
SHMT1P34896 LINC00969-219ENST00000453324 1439 ntTSL 1 (best) BASIC25.88■■□□□ 1.73
SHMT1P34896 DENND2D-202ENST00000369752 1894 ntAPPRIS ALT2 TSL 2 BASIC25.87■■□□□ 1.73
SHMT1P34896 PPP1R12B-202ENST00000356764 1687 ntTSL 1 (best) BASIC25.87■■□□□ 1.73
SHMT1P34896 NXT1-201ENST00000254998 1123 ntAPPRIS P1 TSL 1 (best) BASIC25.87■■□□□ 1.73
SHMT1P34896 CTNNAL1-202ENST00000374593 761 ntTSL 3 BASIC25.87■■□□□ 1.73
SHMT1P34896 NUDT14-202ENST00000392568 845 ntAPPRIS P1 TSL 1 (best) BASIC25.87■■□□□ 1.73
SHMT1P34896 EPCAM-202ENST00000405271 1530 ntTSL 5 BASIC25.87■■□□□ 1.73
SHMT1P34896 SLC19A1-212ENST00000567670 2029 ntAPPRIS ALT2 TSL 1 (best) BASIC25.87■■□□□ 1.73
SHMT1P34896 CKMT1B-207ENST00000441322 1747 ntAPPRIS P1 TSL 1 (best) BASIC25.86■■□□□ 1.73
SHMT1P34896 GPR35-204ENST00000430267 1399 ntAPPRIS ALT2 TSL 5 BASIC25.86■■□□□ 1.73
SHMT1P34896 SPATA22-214ENST00000575375 1374 ntAPPRIS P1 TSL 1 (best) BASIC25.86■■□□□ 1.73
SHMT1P34896 ZYX-201ENST00000322764 2493 ntAPPRIS P2 TSL 1 (best) BASIC25.86■■□□□ 1.73
SHMT1P34896 URAD-201ENST00000332715 931 ntAPPRIS P1 TSL 5 BASIC25.86■■□□□ 1.73
SHMT1P34896 ORMDL1-202ENST00000392349 1137 ntAPPRIS P1 TSL 1 (best) BASIC25.86■■□□□ 1.73
SHMT1P34896 AC019068.1-201ENST00000415226 552 ntTSL 4 BASIC25.86■■□□□ 1.73
SHMT1P34896 SMUG1P1-201ENST00000590640 811 ntBASIC25.86■■□□□ 1.73
SHMT1P34896 DUSP8P3-201ENST00000399571 1760 ntBASIC25.86■■□□□ 1.73
SHMT1P34896 CERS4-205ENST00000558331 1803 ntTSL 5 BASIC25.86■■□□□ 1.73
SHMT1P34896 EML2-209ENST00000587152 2763 ntAPPRIS ALT2 TSL 2 BASIC25.85■■□□□ 1.73
SHMT1P34896 MIR31HG-201ENST00000304425 745 ntTSL 2 BASIC25.85■■□□□ 1.73
SHMT1P34896 RASGRP2-203ENST00000377486 667 ntTSL 3 BASIC25.85■■□□□ 1.73
SHMT1P34896 PDCD5-204ENST00000586035 601 ntTSL 3 BASIC25.85■■□□□ 1.73
SHMT1P34896 CSNK1E-203ENST00000396832 2791 ntAPPRIS P1 TSL 1 (best) BASIC25.85■■□□□ 1.73
SHMT1P34896 C3orf58-207ENST00000495414 1876 ntTSL 2 BASIC25.85■■□□□ 1.73
SHMT1P34896 TALDO1-201ENST00000319006 1346 ntAPPRIS P1 TSL 1 (best) BASIC25.85■■□□□ 1.73
SHMT1P34896 GLI4-201ENST00000340042 1341 ntAPPRIS P1 TSL 1 (best) BASIC25.85■■□□□ 1.73
SHMT1P34896 MPND-202ENST00000359935 1475 ntAPPRIS ALT2 TSL 2 BASIC25.85■■□□□ 1.73
SHMT1P34896 LACTBL1-201ENST00000426928 1641 ntAPPRIS P5 TSL 5 BASIC25.85■■□□□ 1.73
SHMT1P34896 USP45-205ENST00000472914 1617 ntTSL 5 BASIC25.85■■□□□ 1.73
SHMT1P34896 PDLIM2-202ENST00000308354 2236 ntTSL 1 (best) BASIC25.84■■□□□ 1.73
SHMT1P34896 PDLIM2-203ENST00000339162 2226 ntTSL 1 (best) BASIC25.84■■□□□ 1.73
SHMT1P34896 CASP9-203ENST00000375890 1351 ntTSL 2 BASIC25.84■■□□□ 1.73
SHMT1P34896 SMUG1-215ENST00000508394 1697 ntAPPRIS P1 TSL 2 BASIC25.84■■□□□ 1.73
SHMT1P34896 HIST2H2AC-201ENST00000331380 390 ntAPPRIS P1 BASIC25.84■■□□□ 1.73
SHMT1P34896 ZNF419-203ENST00000354197 1569 ntTSL 5 BASIC25.84■■□□□ 1.73
SHMT1P34896 PHLDA3-201ENST00000367309 896 ntAPPRIS P1 TSL 5 BASIC25.84■■□□□ 1.73
SHMT1P34896 CNPY3-201ENST00000372836 1704 ntAPPRIS P1 TSL 1 (best) BASIC25.84■■□□□ 1.73
SHMT1P34896 FRS3-202ENST00000373018 2174 ntAPPRIS P1 TSL 3 BASIC25.84■■□□□ 1.73
SHMT1P34896 VGLL4-208ENST00000424529 1025 ntTSL 1 (best) BASIC25.84■■□□□ 1.73
SHMT1P34896 ATE1-AS1-201ENST00000437593 951 ntTSL 2 BASIC25.84■■□□□ 1.73
SHMT1P34896 KRT18P61-201ENST00000585825 1298 ntBASIC25.84■■□□□ 1.73
SHMT1P34896 NTF6G-201ENST00000591094 616 ntBASIC25.84■■□□□ 1.73
SHMT1P34896 SLC35A3-213ENST00000638988 1286 ntTSL 5 BASIC25.84■■□□□ 1.73
SHMT1P34896 TNFRSF11A-207ENST00000639222 855 ntAPPRIS ALT2 TSL 5 BASIC25.84■■□□□ 1.73
Retrieved 100 of 98,524 protein–RNA pairs in 25.6 ms