Protein–RNA interactions for Protein: P09429

HMGB1, High mobility group protein B1, humanhuman

Known RBP Predictions only

Length 215 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P09429 TMEM235-205ENST00000586400 2272 ntTSL 1 (best) BASIC25.98■■□□□ 1.75
HMGB1P09429 CRHR1-202ENST00000314537 2535 ntAPPRIS P1 TSL 1 (best) BASIC25.97■■□□□ 1.75
HMGB1P09429 POU2F2-215ENST00000560398 1788 ntTSL 5 BASIC25.97■■□□□ 1.75
HMGB1P09429 HAUS7-202ENST00000370211 1363 ntAPPRIS P2 TSL 1 (best) BASIC25.97■■□□□ 1.75
HMGB1P09429 CEBPB-AS1-201ENST00000613921 2648 ntTSL 3 BASIC25.97■■□□□ 1.75
HMGB1P09429 TIMM50-201ENST00000314349 1612 ntAPPRIS P2 TSL 1 (best) BASIC25.97■■□□□ 1.75
HMGB1P09429 ASRGL1-202ENST00000415229 2270 ntAPPRIS P1 TSL 1 (best) BASIC25.97■■□□□ 1.75
HMGB1P09429 CCZ1B-201ENST00000316731 2885 ntAPPRIS P1 TSL 1 (best) BASIC25.97■■□□□ 1.75
HMGB1P09429 CLTB-201ENST00000310418 1215 ntAPPRIS P4 TSL 1 (best) BASIC25.97■■□□□ 1.75
HMGB1P09429 CLTB-202ENST00000345807 1161 ntAPPRIS ALT1 TSL 1 (best) BASIC25.97■■□□□ 1.75
HMGB1P09429 UBE2J2-203ENST00000360466 1047 ntAPPRIS P1 TSL 2 BASIC25.97■■□□□ 1.75
HMGB1P09429 MYD88-205ENST00000424893 1279 ntAPPRIS ALT2 TSL 1 (best) BASIC25.97■■□□□ 1.75
HMGB1P09429 CNTD2-202ENST00000430325 1817 ntAPPRIS P2 TSL 2 BASIC25.97■■□□□ 1.75
HMGB1P09429 PTPRM-201ENST00000332175 6095 ntAPPRIS P3 TSL 1 (best) BASIC25.97■■□□□ 1.75
HMGB1P09429 MTCH2-201ENST00000302503 2587 ntAPPRIS P1 TSL 1 (best) BASIC25.97■■□□□ 1.75
HMGB1P09429 HNRNPM-202ENST00000348943 2568 ntAPPRIS ALT2 TSL 1 (best) BASIC25.96■■□□□ 1.75
HMGB1P09429 MAST4-206ENST00000406374 1066 ntTSL 1 (best) BASIC25.96■■□□□ 1.75
HMGB1P09429 AC073934.1-201ENST00000490314 495 ntTSL 4 BASIC25.96■■□□□ 1.75
HMGB1P09429 SF1-220ENST00000626028 704 ntTSL 2 BASIC25.96■■□□□ 1.75
HMGB1P09429 GRIN2D-201ENST00000263269 5093 ntAPPRIS P1 TSL 1 (best) BASIC25.96■■□□□ 1.75
HMGB1P09429 AL391650.1-201ENST00000448923 1468 ntAPPRIS P1 TSL 2 BASIC25.96■■□□□ 1.75
HMGB1P09429 KCNN1-204ENST00000615435 1691 ntAPPRIS ALT1 TSL 5 BASIC25.96■■□□□ 1.75
HMGB1P09429 ST7L-201ENST00000343210 1866 ntAPPRIS P1 TSL 1 (best) BASIC25.96■■□□□ 1.75
HMGB1P09429 WISP2-203ENST00000372868 1600 ntAPPRIS P1 TSL 3 BASIC25.96■■□□□ 1.75
HMGB1P09429 SIMC1-202ENST00000341199 2056 ntAPPRIS P3 TSL 2 BASIC25.95■■□□□ 1.75
HMGB1P09429 TPRN-202ENST00000409012 2718 ntAPPRIS P2 TSL 1 (best) BASIC25.95■■□□□ 1.75
HMGB1P09429 SYT6-210ENST00000641643 1587 ntBASIC25.95■■□□□ 1.75
HMGB1P09429 KRTAP5-4-201ENST00000399682 1181 ntAPPRIS P5 BASIC25.95■■□□□ 1.74
HMGB1P09429 AC007009.1-201ENST00000458624 429 ntTSL 2 BASIC25.95■■□□□ 1.74
HMGB1P09429 CCER2-201ENST00000571838 1057 ntAPPRIS P2 TSL 5 BASIC25.95■■□□□ 1.74
HMGB1P09429 AL445237.1-202ENST00000604581 425 ntTSL 5 BASIC25.95■■□□□ 1.74
HMGB1P09429 CA15P2-201ENST00000611168 834 ntBASIC25.95■■□□□ 1.74
HMGB1P09429 KRTAP5-4-202ENST00000616115 660 ntAPPRIS ALT2 TSL 5 BASIC25.95■■□□□ 1.74
HMGB1P09429 PLEKHO1-201ENST00000369124 2050 ntAPPRIS P1 TSL 1 (best) BASIC25.95■■□□□ 1.74
HMGB1P09429 AVPR2-201ENST00000337474 1622 ntAPPRIS P1 TSL 1 (best) BASIC25.95■■□□□ 1.74
HMGB1P09429 AL121749.1-201ENST00000635993 1768 ntTSL 5 BASIC25.95■■□□□ 1.74
HMGB1P09429 ST7-201ENST00000265437 2899 ntTSL 1 (best) BASIC25.94■■□□□ 1.74
HMGB1P09429 SOX10-201ENST00000360880 2861 ntAPPRIS P1 TSL 1 (best) BASIC25.94■■□□□ 1.74
HMGB1P09429 SOX10-202ENST00000396884 2879 ntAPPRIS P1 TSL 1 (best) BASIC25.94■■□□□ 1.74
HMGB1P09429 PNMA6A-201ENST00000421798 2209 ntAPPRIS P1 TSL 2 BASIC25.94■■□□□ 1.74
HMGB1P09429 UHRF1BP1L-202ENST00000356828 2023 ntAPPRIS ALT2 TSL 1 (best) BASIC25.94■■□□□ 1.74
HMGB1P09429 NRSN1-204ENST00000378491 2354 ntAPPRIS P1 TSL 1 (best) BASIC25.94■■□□□ 1.74
HMGB1P09429 ACYP1-205ENST00000555463 789 ntTSL 2 BASIC25.94■■□□□ 1.74
HMGB1P09429 AC096887.1-203ENST00000607203 768 ntAPPRIS ALT2 TSL 5 BASIC25.94■■□□□ 1.74
HMGB1P09429 AC131212.1-201ENST00000613771 668 ntBASIC25.94■■□□□ 1.74
HMGB1P09429 CDR2-201ENST00000268383 2702 ntAPPRIS P1 TSL 1 (best) BASIC25.94■■□□□ 1.74
HMGB1P09429 FAM185A-201ENST00000409231 1446 ntAPPRIS ALT2 TSL 2 BASIC25.94■■□□□ 1.74
HMGB1P09429 NIPA2-205ENST00000539711 1412 ntTSL 2 BASIC25.94■■□□□ 1.74
HMGB1P09429 DTNB-201ENST00000288642 2464 ntAPPRIS ALT2 TSL 2 BASIC25.94■■□□□ 1.74
HMGB1P09429 DTNB-208ENST00000406818 2474 ntAPPRIS P4 TSL 1 (best) BASIC25.94■■□□□ 1.74
HMGB1P09429 NR0B1-202ENST00000378970 2021 ntAPPRIS P1 TSL 1 (best) BASIC25.93■■□□□ 1.74
HMGB1P09429 TSSK1B-201ENST00000390666 2478 ntAPPRIS P1 BASIC25.93■■□□□ 1.74
HMGB1P09429 FAHD1-201ENST00000382666 1964 ntTSL 2 BASIC25.93■■□□□ 1.74
HMGB1P09429 HEXB-201ENST00000261416 1901 ntAPPRIS P1 TSL 1 (best) BASIC25.93■■□□□ 1.74
HMGB1P09429 IER2-201ENST00000292433 2085 ntAPPRIS P1 TSL 1 (best) BASIC25.93■■□□□ 1.74
HMGB1P09429 HES6-206ENST00000409574 738 ntTSL 2 BASIC25.93■■□□□ 1.74
HMGB1P09429 PTCHD3P2-201ENST00000424937 1205 ntBASIC25.93■■□□□ 1.74
HMGB1P09429 FAM66C-205ENST00000456135 1216 ntTSL 5 BASIC25.93■■□□□ 1.74
HMGB1P09429 TMEM165-204ENST00000506198 828 ntTSL 2 BASIC25.93■■□□□ 1.74
HMGB1P09429 Z98883.1-202ENST00000635107 1289 ntTSL 5 BASIC25.93■■□□□ 1.74
HMGB1P09429 DISC1-223ENST00000628350 2363 ntAPPRIS ALT2 TSL 1 (best) BASIC25.93■■□□□ 1.74
HMGB1P09429 LINC00526-201ENST00000581067 1875 ntBASIC25.93■■□□□ 1.74
HMGB1P09429 AC138028.2-201ENST00000440406 1539 ntTSL 2 BASIC25.93■■□□□ 1.74
HMGB1P09429 ARX-201ENST00000379044 2876 ntAPPRIS P1 TSL 1 (best) BASIC25.93■■□□□ 1.74
HMGB1P09429 HADH-201ENST00000309522 1912 ntAPPRIS P1 TSL 1 (best) BASIC25.92■■□□□ 1.74
HMGB1P09429 GPR143-203ENST00000467482 1762 ntAPPRIS P1 TSL 1 (best) BASIC25.92■■□□□ 1.74
HMGB1P09429 STX4-202ENST00000394998 1498 ntTSL 2 BASIC25.92■■□□□ 1.74
HMGB1P09429 TMEM198B-205ENST00000487582 1581 ntTSL 1 (best) BASIC25.92■■□□□ 1.74
HMGB1P09429 C2orf82-201ENST00000331342 465 ntAPPRIS P2 TSL 1 (best) BASIC25.92■■□□□ 1.74
HMGB1P09429 SERBP1P1-201ENST00000396021 1160 ntBASIC25.92■■□□□ 1.74
HMGB1P09429 AL136116.3-201ENST00000402907 1138 ntBASIC25.92■■□□□ 1.74
HMGB1P09429 OR2I1P-207ENST00000453522 948 ntBASIC25.92■■□□□ 1.74
HMGB1P09429 AL031602.1-201ENST00000633169 911 ntBASIC25.92■■□□□ 1.74
HMGB1P09429 NPY4R-201ENST00000374312 1956 ntAPPRIS P1 TSL 1 (best) BASIC25.92■■□□□ 1.74
HMGB1P09429 NPY4R2-201ENST00000576178 1956 ntAPPRIS P1 TSL 1 (best) BASIC25.92■■□□□ 1.74
HMGB1P09429 GRAMD1A-201ENST00000317991 2695 ntAPPRIS P3 TSL 1 (best) BASIC25.92■■□□□ 1.74
HMGB1P09429 LSM14B-201ENST00000279068 2548 ntAPPRIS P1 TSL 5 BASIC25.92■■□□□ 1.74
HMGB1P09429 SNUPN-201ENST00000308588 1513 ntAPPRIS P1 TSL 1 (best) BASIC25.92■■□□□ 1.74
HMGB1P09429 TMEM165-201ENST00000381334 1928 ntAPPRIS P1 TSL 1 (best) BASIC25.92■■□□□ 1.74
HMGB1P09429 ADD1-202ENST00000355842 4743 ntTSL 1 (best) BASIC25.92■■□□□ 1.74
HMGB1P09429 ADAD2-201ENST00000268624 2283 ntAPPRIS P3 TSL 2 BASIC25.91■■□□□ 1.74
HMGB1P09429 BIN1-209ENST00000393040 2293 ntAPPRIS ALT2 TSL 1 (best) BASIC25.91■■□□□ 1.74
HMGB1P09429 HOXA4-201ENST00000360046 1747 ntAPPRIS P1 TSL 1 (best) BASIC25.91■■□□□ 1.74
HMGB1P09429 CCDC166-201ENST00000542437 1320 ntAPPRIS P1 TSL 2 BASIC25.91■■□□□ 1.74
HMGB1P09429 LSR-203ENST00000360798 1963 ntTSL 2 BASIC25.91■■□□□ 1.74
HMGB1P09429 GAS2L1-206ENST00000610653 2238 ntTSL 1 (best) BASIC25.91■■□□□ 1.74
HMGB1P09429 LINC01632-201ENST00000615763 496 ntTSL 3 BASIC25.91■■□□□ 1.74
HMGB1P09429 AC011298.3-201ENST00000615796 283 ntBASIC25.91■■□□□ 1.74
HMGB1P09429 PDS5A-202ENST00000503396 2685 ntTSL 1 (best) BASIC25.91■■□□□ 1.74
HMGB1P09429 SSX2IP-203ENST00000437941 5843 ntTSL 2 BASIC25.9■■□□□ 1.74
HMGB1P09429 NUDT16L1-204ENST00000586536 1406 ntTSL 2 BASIC25.9■■□□□ 1.74
HMGB1P09429 CRIM1-201ENST00000280527 5912 ntAPPRIS P1 TSL 1 (best) BASIC25.9■■□□□ 1.74
HMGB1P09429 AC080038.3-201ENST00000623346 1952 ntBASIC25.9■■□□□ 1.74
HMGB1P09429 FAM167A-204ENST00000528897 1620 ntAPPRIS P1 TSL 2 BASIC25.9■■□□□ 1.74
HMGB1P09429 PRICKLE4-201ENST00000394259 939 ntAPPRIS ALT2 TSL 5 BASIC25.9■■□□□ 1.74
HMGB1P09429 UBE2E2-203ENST00000425792 1248 ntAPPRIS P1 TSL 2 BASIC25.9■■□□□ 1.74
HMGB1P09429 AC084116.4-201ENST00000524320 484 ntTSL 2 BASIC25.9■■□□□ 1.74
HMGB1P09429 EEF1D-201ENST00000317198 1458 ntAPPRIS ALT2 TSL 5 BASIC25.9■■□□□ 1.74
HMGB1P09429 C14orf80-201ENST00000329886 1947 ntAPPRIS ALT2 TSL 1 (best) BASIC25.9■■□□□ 1.74
HMGB1P09429 HADH-209ENST00000603302 2032 ntTSL 1 (best) BASIC25.9■■□□□ 1.74
Retrieved 100 of 98,524 protein–RNA pairs in 32.4 ms