Protein–RNA interactions for Protein: P09017

HOXC4, Homeobox protein Hox-C4, humanhuman

Predicted RBP Predictions only

Length 264 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC4P09017 AC093817.1-201ENST00000507296 812 ntTSL 3 BASIC21.61■■□□□ 1.05
HOXC4P09017 LINC01942-201ENST00000521373 513 ntTSL 4 BASIC21.61■■□□□ 1.05
HOXC4P09017 LRRC37A17P-202ENST00000570478 572 ntTSL 4 BASIC21.61■■□□□ 1.05
HOXC4P09017 AP2S1-203ENST00000593442 636 ntTSL 2 BASIC21.61■■□□□ 1.05
HOXC4P09017 AC093323.1-202ENST00000635031 2045 ntBASIC21.61■■□□□ 1.05
HOXC4P09017 FAM136A-201ENST00000037869 1810 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
HOXC4P09017 FAIM-201ENST00000338446 1622 ntTSL 5 BASIC21.61■■□□□ 1.05
HOXC4P09017 SIX3-201ENST00000260653 2523 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
HOXC4P09017 PTP4A3-204ENST00000521578 1717 ntAPPRIS P1 TSL 5 BASIC21.6■■□□□ 1.05
HOXC4P09017 OXCT2P1-201ENST00000447263 1535 ntBASIC21.6■■□□□ 1.05
HOXC4P09017 IGFBP1-201ENST00000275525 1653 ntAPPRIS P2 TSL 1 (best) BASIC21.6■■□□□ 1.05
HOXC4P09017 STX4-201ENST00000313843 1481 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
HOXC4P09017 MPC1-202ENST00000360961 962 ntAPPRIS P2 TSL 5 BASIC21.6■■□□□ 1.05
HOXC4P09017 AL162430.1-201ENST00000480705 870 ntBASIC21.6■■□□□ 1.05
HOXC4P09017 ZNF696-205ENST00000521537 705 ntTSL 2 BASIC21.6■■□□□ 1.05
HOXC4P09017 GLI4-210ENST00000523522 1297 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
HOXC4P09017 FRMD8-208ENST00000531296 366 ntTSL 1 (best) BASIC21.6■■□□□ 1.05
HOXC4P09017 AC104564.3-201ENST00000582367 638 ntBASIC21.6■■□□□ 1.05
HOXC4P09017 SLC12A5-217ENST00000626937 1224 ntTSL 1 (best) BASIC21.6■■□□□ 1.05
HOXC4P09017 CAPN10-207ENST00000391984 2644 ntAPPRIS P2 TSL 1 (best) BASIC21.6■■□□□ 1.05
HOXC4P09017 PLEKHA8-201ENST00000258679 2293 ntTSL 1 (best) BASIC21.6■■□□□ 1.05
HOXC4P09017 RELL2-205ENST00000518856 1419 ntTSL 5 BASIC21.6■■□□□ 1.05
HOXC4P09017 RASSF5-202ENST00000579436 2064 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
HOXC4P09017 FRS3-202ENST00000373018 2174 ntAPPRIS P1 TSL 3 BASIC21.6■■□□□ 1.05
HOXC4P09017 PICK1-202ENST00000404072 2164 ntAPPRIS P1 TSL 2 BASIC21.6■■□□□ 1.05
HOXC4P09017 FBXO45-201ENST00000311630 5899 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
HOXC4P09017 SPAG7-205ENST00000573366 1668 ntTSL 3 BASIC21.6■■□□□ 1.05
HOXC4P09017 TSEN15-201ENST00000361641 1960 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
HOXC4P09017 TBR1-202ENST00000410035 1454 ntTSL 2 BASIC21.59■■□□□ 1.05
HOXC4P09017 B4GAT1-201ENST00000311181 2072 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
HOXC4P09017 EEF1D-256ENST00000618139 2238 ntTSL 5 BASIC21.59■■□□□ 1.05
HOXC4P09017 DYRK1B-201ENST00000323039 2535 ntAPPRIS P3 TSL 1 (best) BASIC21.59■■□□□ 1.05
HOXC4P09017 PINK1-201ENST00000321556 2660 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
HOXC4P09017 PCMT1-201ENST00000367378 1293 ntAPPRIS P3 TSL 1 (best) BASIC21.59■■□□□ 1.05
HOXC4P09017 SRPK3-204ENST00000370108 1863 ntAPPRIS ALT2 TSL 5 BASIC21.59■■□□□ 1.05
HOXC4P09017 AZIN2-204ENST00000373443 2048 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
HOXC4P09017 HTATIP2-204ENST00000451739 1748 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
HOXC4P09017 TMEM70-203ENST00000517439 617 ntTSL 2 BASIC21.59■■□□□ 1.05
HOXC4P09017 PTGDR-202ENST00000553372 1216 ntTSL 3 BASIC21.59■■□□□ 1.05
HOXC4P09017 PYCARD-AS1-201ENST00000561916 1095 ntTSL 2 BASIC21.59■■□□□ 1.05
HOXC4P09017 LINC02228-203ENST00000641970 1355 ntBASIC21.59■■□□□ 1.05
HOXC4P09017 CDCP1-202ENST00000425231 1416 ntAPPRIS ALT2 TSL 1 (best) BASIC21.58■■□□□ 1.05
HOXC4P09017 NXT1-201ENST00000254998 1123 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.05
HOXC4P09017 FAM219A-205ENST00000379084 893 ntTSL 5 BASIC21.58■■□□□ 1.05
HOXC4P09017 TUSC3-209ENST00000509380 1266 ntTSL 5 BASIC21.58■■□□□ 1.05
HOXC4P09017 TMEM44-211ENST00000473092 1508 ntTSL 1 (best) BASIC21.58■■□□□ 1.04
HOXC4P09017 AC135048.1-201ENST00000566056 1318 ntTSL 2 BASIC21.57■■□□□ 1.04
HOXC4P09017 CYHR1-201ENST00000306145 1409 ntTSL 1 (best) BASIC21.57■■□□□ 1.04
HOXC4P09017 SLC19A1-212ENST00000567670 2029 ntAPPRIS ALT2 TSL 1 (best) BASIC21.57■■□□□ 1.04
HOXC4P09017 MOSPD3-202ENST00000379527 1016 ntAPPRIS P1 TSL 5 BASIC21.57■■□□□ 1.04
HOXC4P09017 NT5C3AP1-201ENST00000394500 1012 ntBASIC21.57■■□□□ 1.04
HOXC4P09017 PARL-206ENST00000435888 1098 ntTSL 5 BASIC21.57■■□□□ 1.04
HOXC4P09017 DDN-AS1-202ENST00000547866 2114 ntTSL 3 BASIC21.57■■□□□ 1.04
HOXC4P09017 TERF1P2-201ENST00000583350 1212 ntBASIC21.57■■□□□ 1.04
HOXC4P09017 CTAG1A-201ENST00000593606 993 ntTSL 5 BASIC21.57■■□□□ 1.04
HOXC4P09017 EID2B-201ENST00000326282 1865 ntAPPRIS P1 BASIC21.57■■□□□ 1.04
HOXC4P09017 SEC22C-207ENST00000423701 1458 ntTSL 1 (best) BASIC21.57■■□□□ 1.04
HOXC4P09017 ZMYND11-210ENST00000403354 1664 ntTSL 5 BASIC21.56■■□□□ 1.04
HOXC4P09017 RAB24-201ENST00000303251 1311 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
HOXC4P09017 UQCR11-203ENST00000591899 1324 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
HOXC4P09017 PTH1R-207ENST00000449590 2123 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
HOXC4P09017 POLDIP2-201ENST00000540200 2121 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
HOXC4P09017 AC090377.1-201ENST00000585691 1762 ntTSL 3 BASIC21.56■■□□□ 1.04
HOXC4P09017 NKX2-3-202ENST00000622383 1986 ntTSL 5 BASIC21.56■■□□□ 1.04
HOXC4P09017 C7orf25-203ENST00000431882 1645 ntTSL 2 BASIC21.56■■□□□ 1.04
HOXC4P09017 PRSS56-201ENST00000449534 2157 ntAPPRIS ALT2 TSL 5 BASIC21.56■■□□□ 1.04
HOXC4P09017 PRSS56-203ENST00000617714 2158 ntAPPRIS P2 TSL 5 BASIC21.56■■□□□ 1.04
HOXC4P09017 MSANTD3-207ENST00000622639 1748 ntAPPRIS P1 TSL 3 BASIC21.56■■□□□ 1.04
HOXC4P09017 PRR25-201ENST00000301698 1209 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
HOXC4P09017 AC092675.2-201ENST00000413274 541 ntTSL 4 BASIC21.56■■□□□ 1.04
HOXC4P09017 GPR35-204ENST00000430267 1399 ntAPPRIS ALT2 TSL 5 BASIC21.56■■□□□ 1.04
HOXC4P09017 DNAAF3-203ENST00000524407 2059 ntAPPRIS ALT2 TSL 1 (best) BASIC21.56■■□□□ 1.04
HOXC4P09017 RASD1-202ENST00000579152 1404 ntTSL 2 BASIC21.55■■□□□ 1.04
HOXC4P09017 C21orf2-203ENST00000397956 1634 ntAPPRIS ALT2 TSL 1 (best) BASIC21.55■■□□□ 1.04
HOXC4P09017 DUX4L2-201ENST00000561772 1275 ntBASIC21.55■■□□□ 1.04
HOXC4P09017 CCDC92B-201ENST00000575506 885 ntBASIC21.55■■□□□ 1.04
HOXC4P09017 SMUG1P1-201ENST00000590640 811 ntBASIC21.55■■□□□ 1.04
HOXC4P09017 DUX4-206ENST00000616166 1275 ntAPPRIS P2 BASIC21.55■■□□□ 1.04
HOXC4P09017 DUX4L6-201ENST00000626483 1275 ntBASIC21.55■■□□□ 1.04
HOXC4P09017 DUX4L1-201ENST00000627662 1275 ntBASIC21.55■■□□□ 1.04
HOXC4P09017 DUX4L8-201ENST00000629013 1275 ntBASIC21.55■■□□□ 1.04
HOXC4P09017 DUX4L3-201ENST00000630187 1275 ntBASIC21.55■■□□□ 1.04
HOXC4P09017 DUX4L7-201ENST00000630678 1275 ntBASIC21.55■■□□□ 1.04
HOXC4P09017 DUX4L5-201ENST00000630834 1275 ntBASIC21.55■■□□□ 1.04
HOXC4P09017 ANKRD11-217ENST00000613312 1584 ntAPPRIS ALT2 TSL 5 BASIC21.55■■□□□ 1.04
HOXC4P09017 TMSB15B-202ENST00000436583 2186 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
HOXC4P09017 MCUB-201ENST00000394650 2278 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
HOXC4P09017 ZNF511-202ENST00000361518 1520 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
HOXC4P09017 LINC01678-201ENST00000411694 863 ntTSL 5 BASIC21.54■■□□□ 1.04
HOXC4P09017 SLC25A45-206ENST00000526432 894 ntTSL 1 (best) BASIC21.54■■□□□ 1.04
HOXC4P09017 ELANE-202ENST00000590230 1028 ntAPPRIS P1 TSL 5 BASIC21.54■■□□□ 1.04
HOXC4P09017 AC012313.1-203ENST00000597980 570 ntTSL 4 BASIC21.54■■□□□ 1.04
HOXC4P09017 AC092666.2-201ENST00000613287 246 ntBASIC21.54■■□□□ 1.04
HOXC4P09017 PCOLCE2-201ENST00000295992 2021 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
HOXC4P09017 SRXN1-201ENST00000381962 2698 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
HOXC4P09017 CNTD2-202ENST00000430325 1817 ntAPPRIS P2 TSL 2 BASIC21.54■■□□□ 1.04
HOXC4P09017 DACT3-202ENST00000391916 2834 ntAPPRIS P1 TSL 5 BASIC21.54■■□□□ 1.04
HOXC4P09017 CYS1-201ENST00000381813 2738 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
HOXC4P09017 PDLIM3-203ENST00000284771 1672 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
HOXC4P09017 CBLN2-209ENST00000585159 2406 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
Retrieved 100 of 98,524 protein–RNA pairs in 347.1 ms