Protein–RNA interactions for Protein: O43556

SGCE, Epsilon-sarcoglycan, humanhuman

Predictions only

Length 437 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SGCEO43556 SRPK3-202ENST00000370101 1958 ntAPPRIS P3 TSL 1 (best) BASIC19.33■□□□□ 0.69
SGCEO43556 DOK1-203ENST00000409429 1955 ntTSL 1 (best) BASIC19.33■□□□□ 0.69
SGCEO43556 AC007326.4-201ENST00000638240 1669 ntAPPRIS P1 TSL 5 BASIC19.33■□□□□ 0.69
SGCEO43556 SLC35D3-201ENST00000331858 2359 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.69
SGCEO43556 PEMT-201ENST00000255389 1013 ntTSL 1 (best) BASIC19.33■□□□□ 0.68
SGCEO43556 QDPR-206ENST00000508623 601 ntTSL 3 BASIC19.33■□□□□ 0.68
SGCEO43556 ERGIC1-206ENST00000519860 1000 ntTSL 3 BASIC19.33■□□□□ 0.68
SGCEO43556 LRRK1-208ENST00000532029 1241 ntTSL 1 (best) BASIC19.33■□□□□ 0.68
SGCEO43556 TRIR-202ENST00000588213 841 ntTSL 3 BASIC19.33■□□□□ 0.68
SGCEO43556 AL512631.2-201ENST00000604634 923 ntBASIC19.33■□□□□ 0.68
SGCEO43556 PIKFYVE-203ENST00000392202 2039 ntTSL 1 (best) BASIC19.33■□□□□ 0.68
SGCEO43556 IL17RE-201ENST00000383814 2704 ntAPPRIS P2 TSL 1 (best) BASIC19.33■□□□□ 0.68
SGCEO43556 PRODH-203ENST00000357068 2462 ntAPPRIS P3 TSL 1 (best) BASIC19.33■□□□□ 0.68
SGCEO43556 SIRT7-201ENST00000328666 1743 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
SGCEO43556 CMTM4-201ENST00000330687 3414 ntTSL 1 (best) BASIC19.33■□□□□ 0.68
SGCEO43556 MAP2K5-204ENST00000395476 1689 ntTSL 1 (best) BASIC19.33■□□□□ 0.68
SGCEO43556 CFP-202ENST00000377005 1435 ntAPPRIS ALT2 TSL 1 (best) BASIC19.33■□□□□ 0.68
SGCEO43556 SLC25A11-201ENST00000225665 1897 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
SGCEO43556 CACNB1-201ENST00000344140 1889 ntTSL 1 (best) BASIC19.33■□□□□ 0.68
SGCEO43556 ZFYVE9-201ENST00000287727 5194 ntAPPRIS P4 TSL 5 BASIC19.32■□□□□ 0.68
SGCEO43556 HTRA2-201ENST00000258080 2370 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
SGCEO43556 TULP1-202ENST00000322263 1941 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
SGCEO43556 WDR86-208ENST00000628331 1905 ntTSL 5 BASIC19.32■□□□□ 0.68
SGCEO43556 PRELID2-201ENST00000334744 2140 ntTSL 2 BASIC19.32■□□□□ 0.68
SGCEO43556 TMEM134-202ENST00000393877 823 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
SGCEO43556 HDHD5-203ENST00000399852 1118 ntTSL 3 BASIC19.32■□□□□ 0.68
SGCEO43556 DDN-AS1-202ENST00000547866 2114 ntTSL 3 BASIC19.32■□□□□ 0.68
SGCEO43556 AC099791.2-201ENST00000605725 427 ntBASIC19.32■□□□□ 0.68
SGCEO43556 SLC35A3-216ENST00000639221 1032 ntTSL 5 BASIC19.32■□□□□ 0.68
SGCEO43556 TCEA1-214ENST00000640382 1234 ntTSL 5 BASIC19.32■□□□□ 0.68
SGCEO43556 HSD11B1L-217ENST00000581521 1884 ntAPPRIS P3 TSL 5 BASIC19.32■□□□□ 0.68
SGCEO43556 TIGD5-201ENST00000504548 5390 ntAPPRIS P1 BASIC19.32■□□□□ 0.68
SGCEO43556 ASPSCR1-202ENST00000306739 1843 ntAPPRIS P3 TSL 1 (best) BASIC19.32■□□□□ 0.68
SGCEO43556 KCNIP1-201ENST00000328939 2014 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
SGCEO43556 CACNG2-201ENST00000300105 2384 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
SGCEO43556 MAPK12-211ENST00000622558 1779 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
SGCEO43556 SLC35F4-206ENST00000556826 1908 ntAPPRIS P1 TSL 5 BASIC19.31■□□□□ 0.68
SGCEO43556 PTPN13-205ENST00000502971 1708 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
SGCEO43556 H1FX-201ENST00000333762 1507 ntAPPRIS P1 BASIC19.31■□□□□ 0.68
SGCEO43556 ESRRAP2-201ENST00000418437 1549 ntBASIC19.31■□□□□ 0.68
SGCEO43556 UBA5-208ENST00000473651 1513 ntTSL 5 BASIC19.31■□□□□ 0.68
SGCEO43556 DLL3-202ENST00000356433 2055 ntAPPRIS P1 TSL 2 BASIC19.31■□□□□ 0.68
SGCEO43556 TPST2-203ENST00000403880 2084 ntAPPRIS P1 TSL 5 BASIC19.31■□□□□ 0.68
SGCEO43556 ACSF2-207ENST00000504392 1881 ntTSL 2 BASIC19.31■□□□□ 0.68
SGCEO43556 FAM47E-201ENST00000424749 1484 ntAPPRIS P3 TSL 5 BASIC19.31■□□□□ 0.68
SGCEO43556 SLC19A1-212ENST00000567670 2029 ntAPPRIS ALT2 TSL 1 (best) BASIC19.31■□□□□ 0.68
SGCEO43556 PYCARD-201ENST00000247470 990 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
SGCEO43556 YIF1A-201ENST00000359461 943 ntTSL 2 BASIC19.31■□□□□ 0.68
SGCEO43556 YIF1A-203ENST00000376901 1124 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
SGCEO43556 AL499627.2-201ENST00000606283 725 ntBASIC19.31■□□□□ 0.68
SGCEO43556 AC004687.1-201ENST00000579003 1625 ntBASIC19.31■□□□□ 0.68
SGCEO43556 KCNK13-201ENST00000282146 2522 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
SGCEO43556 ZNF395-210ENST00000523095 1790 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
SGCEO43556 PPT2-248ENST00000395523 2111 ntAPPRIS ALT2 TSL 5 BASIC19.31■□□□□ 0.68
SGCEO43556 LTK-202ENST00000355166 2940 ntAPPRIS ALT2 TSL 1 (best) BASIC19.31■□□□□ 0.68
SGCEO43556 SKI-201ENST00000378536 5613 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
SGCEO43556 TPRN-202ENST00000409012 2718 ntAPPRIS P2 TSL 1 (best) BASIC19.31■□□□□ 0.68
SGCEO43556 PDIA6-207ENST00000540494 2509 ntAPPRIS ALT1 TSL 2 BASIC19.3■□□□□ 0.68
SGCEO43556 B3GNT6-202ENST00000622824 2503 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
SGCEO43556 HAGHL-212ENST00000564537 1667 ntTSL 2 BASIC19.3■□□□□ 0.68
SGCEO43556 ST3GAL4-213ENST00000530591 1459 ntAPPRIS P3 TSL 1 (best) BASIC19.3■□□□□ 0.68
SGCEO43556 NUDT18-201ENST00000611621 1497 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
SGCEO43556 EMC9-201ENST00000216799 835 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
SGCEO43556 TNFRSF25-201ENST00000348333 1119 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
SGCEO43556 TNFRSF25-202ENST00000351748 705 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
SGCEO43556 SURF2-201ENST00000371964 842 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
SGCEO43556 IL15RA-209ENST00000397255 759 ntAPPRIS ALT2 TSL 5 BASIC19.3■□□□□ 0.68
SGCEO43556 DPP10-AS1-201ENST00000432658 730 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
SGCEO43556 IL15RA-216ENST00000530685 660 ntTSL 5 BASIC19.3■□□□□ 0.68
SGCEO43556 TMEM218-215ENST00000532407 1103 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
SGCEO43556 CCDC189-211ENST00000545825 1046 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
SGCEO43556 OIP5-AS1-208ENST00000560706 473 ntTSL 5 BASIC19.3■□□□□ 0.68
SGCEO43556 TRAF7-203ENST00000565383 799 ntTSL 5 BASIC19.3■□□□□ 0.68
SGCEO43556 AC092171.4-201ENST00000609130 632 ntBASIC19.3■□□□□ 0.68
SGCEO43556 MIR663AHG-233ENST00000609248 830 ntTSL 5 BASIC19.3■□□□□ 0.68
SGCEO43556 SLC30A2-201ENST00000374276 2494 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
SGCEO43556 TMEM44-211ENST00000473092 1508 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
SGCEO43556 TMEM259-201ENST00000333175 2581 ntAPPRIS P3 TSL 1 (best) BASIC19.3■□□□□ 0.68
SGCEO43556 YY1AP1-212ENST00000404643 2654 ntAPPRIS ALT2 TSL 1 (best) BASIC19.29■□□□□ 0.68
SGCEO43556 AP006623.1-201ENST00000506172 2061 ntTSL 5 BASIC19.29■□□□□ 0.68
SGCEO43556 LEFTY1-201ENST00000272134 1626 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
SGCEO43556 DENND2D-202ENST00000369752 1894 ntAPPRIS ALT2 TSL 2 BASIC19.29■□□□□ 0.68
SGCEO43556 COG8-201ENST00000562081 1731 ntAPPRIS P1 TSL 5 BASIC19.29■□□□□ 0.68
SGCEO43556 CHKB-AS1-201ENST00000380711 578 ntTSL 2 BASIC19.29■□□□□ 0.68
SGCEO43556 AC006455.2-201ENST00000429931 906 ntBASIC19.29■□□□□ 0.68
SGCEO43556 TMC6-218ENST00000591436 1155 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
SGCEO43556 AC096677.1-201ENST00000454651 1516 ntTSL 2 BASIC19.29■□□□□ 0.68
SGCEO43556 ECHDC1-203ENST00000368291 1354 ntTSL 2 BASIC19.29■□□□□ 0.68
SGCEO43556 ANKLE2-201ENST00000357997 4646 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
SGCEO43556 SUMF1-201ENST00000272902 2159 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
SGCEO43556 CMPK2-202ENST00000404168 2042 ntAPPRIS ALT2 TSL 1 (best) BASIC19.29■□□□□ 0.68
SGCEO43556 SCAND1-202ENST00000373991 1727 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
SGCEO43556 SOX8-201ENST00000293894 3049 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
SGCEO43556 BTBD17-201ENST00000375366 1805 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
SGCEO43556 PNRC1-201ENST00000336032 2065 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
SGCEO43556 WRAP73-201ENST00000270708 1665 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
SGCEO43556 ARFIP2-205ENST00000525235 852 ntTSL 2 BASIC19.28■□□□□ 0.68
SGCEO43556 LY6H-205ENST00000615409 980 ntAPPRIS P3 TSL 1 (best) BASIC19.28■□□□□ 0.68
SGCEO43556 NBPF26-209ENST00000624419 1133 ntTSL 5 BASIC19.28■□□□□ 0.68
SGCEO43556 MAP3K21-203ENST00000366624 5809 ntAPPRIS P2 TSL 1 (best) BASIC19.28■□□□□ 0.68
Retrieved 100 of 98,524 protein–RNA pairs in 75.5 ms