Protein–RNA interactions for Protein: O00257

CBX4, E3 SUMO-protein ligase CBX4, humanhuman

Predictions only

Length 560 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CBX4O00257 FNTA-208ENST00000529687 1950 ntTSL 2 BASIC22.47■■□□□ 1.19
CBX4O00257 GFRA3-202ENST00000378362 1837 ntAPPRIS ALT2 TSL 1 (best) BASIC22.47■■□□□ 1.19
CBX4O00257 RAB11FIP3-201ENST00000262305 4831 ntAPPRIS P2 TSL 1 (best) BASIC22.47■■□□□ 1.19
CBX4O00257 FMR1-AS1-201ENST00000594922 2005 ntTSL 1 (best) BASIC22.47■■□□□ 1.19
CBX4O00257 KCTD8-201ENST00000360029 2587 ntAPPRIS P1 TSL 1 (best) BASIC22.46■■□□□ 1.19
CBX4O00257 CEBPD-201ENST00000408965 2178 ntAPPRIS P1 BASIC22.46■■□□□ 1.19
CBX4O00257 KLRG2-202ENST00000393039 1148 ntTSL 5 BASIC22.46■■□□□ 1.19
CBX4O00257 NDUFAF8-201ENST00000431388 615 ntAPPRIS P1 TSL 1 (best) BASIC22.46■■□□□ 1.19
CBX4O00257 LRRC75A-203ENST00000470794 1390 ntAPPRIS ALT2 TSL 1 (best) BASIC22.46■■□□□ 1.19
CBX4O00257 SMIM19-203ENST00000417410 1466 ntAPPRIS P1 TSL 2 BASIC22.46■■□□□ 1.19
CBX4O00257 HTATIP2-201ENST00000419348 1477 ntTSL 2 BASIC22.46■■□□□ 1.19
CBX4O00257 ACP1-201ENST00000272065 1549 ntAPPRIS P5 TSL 1 (best) BASIC22.46■■□□□ 1.19
CBX4O00257 CPNE2-202ENST00000535318 2316 ntAPPRIS P1 TSL 1 (best) BASIC22.46■■□□□ 1.19
CBX4O00257 RCN2-201ENST00000320963 1750 ntTSL 5 BASIC22.45■■□□□ 1.19
CBX4O00257 FAM86JP-203ENST00000485843 2012 ntTSL 1 (best) BASIC22.45■■□□□ 1.18
CBX4O00257 STK32C-201ENST00000298630 2086 ntAPPRIS P1 TSL 1 (best) BASIC22.45■■□□□ 1.18
CBX4O00257 MAF-202ENST00000393350 6384 ntAPPRIS ALT2 BASIC22.45■■□□□ 1.18
CBX4O00257 DDN-AS1-202ENST00000547866 2114 ntTSL 3 BASIC22.45■■□□□ 1.18
CBX4O00257 UBE2J2-203ENST00000360466 1047 ntAPPRIS P1 TSL 2 BASIC22.45■■□□□ 1.18
CBX4O00257 ACYP1-205ENST00000555463 789 ntTSL 2 BASIC22.45■■□□□ 1.18
CBX4O00257 HMGA2-205ENST00000425208 1444 ntTSL 1 (best) BASIC22.45■■□□□ 1.18
CBX4O00257 PPP1R12B-202ENST00000356764 1687 ntTSL 1 (best) BASIC22.45■■□□□ 1.18
CBX4O00257 VSX1-205ENST00000429762 1977 ntTSL 1 (best) BASIC22.45■■□□□ 1.18
CBX4O00257 IQCJ-SCHIP1-201ENST00000412423 2067 ntAPPRIS ALT2 TSL 1 (best) BASIC22.45■■□□□ 1.18
CBX4O00257 CPLX1-201ENST00000304062 2181 ntAPPRIS P1 TSL 1 (best) BASIC22.45■■□□□ 1.18
CBX4O00257 PICK1-202ENST00000404072 2164 ntAPPRIS P1 TSL 2 BASIC22.45■■□□□ 1.18
CBX4O00257 SLC12A2-201ENST00000262461 6885 ntAPPRIS P3 TSL 1 (best) BASIC22.45■■□□□ 1.18
CBX4O00257 SLC4A3-203ENST00000358055 4454 ntAPPRIS P1 TSL 1 (best) BASIC22.44■■□□□ 1.18
CBX4O00257 RTL8C-201ENST00000257013 1181 ntAPPRIS P1 BASIC22.44■■□□□ 1.18
CBX4O00257 UTS2R-201ENST00000313135 1357 ntAPPRIS P1 BASIC22.44■■□□□ 1.18
CBX4O00257 FAIM-201ENST00000338446 1622 ntTSL 5 BASIC22.44■■□□□ 1.18
CBX4O00257 PCMT1-201ENST00000367378 1293 ntAPPRIS P3 TSL 1 (best) BASIC22.44■■□□□ 1.18
CBX4O00257 CDC37L1-202ENST00000381858 1244 ntTSL 5 BASIC22.44■■□□□ 1.18
CBX4O00257 CACNB1-203ENST00000394310 1753 ntAPPRIS ALT1 TSL 1 (best) BASIC22.44■■□□□ 1.18
CBX4O00257 GDI1-204ENST00000447750 2474 ntAPPRIS P1 TSL 1 (best) BASIC22.44■■□□□ 1.18
CBX4O00257 AC008443.4-201ENST00000503314 456 ntTSL 4 BASIC22.44■■□□□ 1.18
CBX4O00257 LEF1-AS1-207ENST00000512637 1675 ntTSL 1 (best) BASIC22.44■■□□□ 1.18
CBX4O00257 RAB6A-204ENST00000536566 1267 ntTSL 5 BASIC22.44■■□□□ 1.18
CBX4O00257 KREMEN2-204ENST00000572045 2339 ntAPPRIS ALT2 TSL 1 (best) BASIC22.44■■□□□ 1.18
CBX4O00257 MADCAM1-208ENST00000621286 1203 ntAPPRIS ALT2 TSL 5 BASIC22.44■■□□□ 1.18
CBX4O00257 PKM-201ENST00000319622 2717 ntAPPRIS P5 TSL 2 BASIC22.44■■□□□ 1.18
CBX4O00257 DOHH-201ENST00000427575 2031 ntAPPRIS P1 TSL 1 (best) BASIC22.43■■□□□ 1.18
CBX4O00257 CACTIN-AS1-201ENST00000592274 1913 ntTSL 2 BASIC22.43■■□□□ 1.18
CBX4O00257 KCNN1-204ENST00000615435 1691 ntAPPRIS ALT1 TSL 5 BASIC22.43■■□□□ 1.18
CBX4O00257 FAM110A-206ENST00000541082 1614 ntAPPRIS P1 TSL 3 BASIC22.43■■□□□ 1.18
CBX4O00257 IMPA2-201ENST00000269159 1534 ntAPPRIS P1 TSL 1 (best) BASIC22.43■■□□□ 1.18
CBX4O00257 KRTAP5-7-201ENST00000398536 1408 ntAPPRIS P1 BASIC22.43■■□□□ 1.18
CBX4O00257 TSPY26P-201ENST00000476365 1326 ntBASIC22.43■■□□□ 1.18
CBX4O00257 METTL23-201ENST00000341249 1155 ntAPPRIS P1 TSL 1 (best) BASIC22.43■■□□□ 1.18
CBX4O00257 CCDC160-201ENST00000370809 1299 ntAPPRIS P1 TSL 5 BASIC22.43■■□□□ 1.18
CBX4O00257 MOSPD3-203ENST00000393950 1191 ntAPPRIS P1 TSL 1 (best) BASIC22.43■■□□□ 1.18
CBX4O00257 CCDC115-202ENST00000409127 1247 ntTSL 2 BASIC22.43■■□□□ 1.18
CBX4O00257 AICDA-202ENST00000537228 667 ntTSL 5 BASIC22.43■■□□□ 1.18
CBX4O00257 ANKRD20A6P-201ENST00000618763 204 ntBASIC22.43■■□□□ 1.18
CBX4O00257 TANGO2-201ENST00000327374 2273 ntAPPRIS P1 TSL 1 (best) BASIC22.43■■□□□ 1.18
CBX4O00257 KLHL36-201ENST00000258157 1974 ntTSL 1 (best) BASIC22.43■■□□□ 1.18
CBX4O00257 PFKFB3-201ENST00000317350 1999 ntAPPRIS ALT1 TSL 5 BASIC22.43■■□□□ 1.18
CBX4O00257 SYT6-209ENST00000610222 1707 ntAPPRIS P1 TSL 5 BASIC22.43■■□□□ 1.18
CBX4O00257 RHBDL3-204ENST00000538145 1338 ntAPPRIS ALT2 TSL 1 (best) BASIC22.42■■□□□ 1.18
CBX4O00257 HMGA2-203ENST00000393578 1993 ntAPPRIS ALT1 TSL 1 (best) BASIC22.42■■□□□ 1.18
CBX4O00257 FAIM-202ENST00000360570 1157 ntAPPRIS ALT1 TSL 3 BASIC22.42■■□□□ 1.18
CBX4O00257 LBX2-202ENST00000377566 1186 ntAPPRIS P1 TSL 1 (best) BASIC22.42■■□□□ 1.18
CBX4O00257 RBM38-205ENST00000440234 686 ntTSL 2 BASIC22.42■■□□□ 1.18
CBX4O00257 IGHV3-19-201ENST00000521488 291 ntBASIC22.42■■□□□ 1.18
CBX4O00257 AC084116.4-201ENST00000524320 484 ntTSL 2 BASIC22.42■■□□□ 1.18
CBX4O00257 SIRT3-215ENST00000532956 1235 ntTSL 2 BASIC22.42■■□□□ 1.18
CBX4O00257 HOMER3-206ENST00000594439 982 ntTSL 1 (best) BASIC22.42■■□□□ 1.18
CBX4O00257 EI24-211ENST00000534546 1544 ntTSL 2 BASIC22.41■■□□□ 1.18
CBX4O00257 DACT3-201ENST00000300875 2526 ntTSL 1 (best) BASIC22.41■■□□□ 1.18
CBX4O00257 SPOCK3-222ENST00000512681 1457 ntTSL 2 BASIC22.41■■□□□ 1.18
CBX4O00257 BTBD7-205ENST00000554565 2697 ntTSL 1 (best) BASIC22.41■■□□□ 1.18
CBX4O00257 HSD17B14-201ENST00000263278 1238 ntAPPRIS P1 TSL 1 (best) BASIC22.41■■□□□ 1.18
CBX4O00257 NGEF-203ENST00000409079 1022 ntTSL 1 (best) BASIC22.41■■□□□ 1.18
CBX4O00257 AP005435.1-201ENST00000529293 1178 ntBASIC22.41■■□□□ 1.18
CBX4O00257 SSPN-204ENST00000535504 419 ntTSL 1 (best) BASIC22.41■■□□□ 1.18
CBX4O00257 ATAD3A-203ENST00000378756 2492 ntAPPRIS P1 TSL 1 (best) BASIC22.41■■□□□ 1.18
CBX4O00257 C7orf25-203ENST00000431882 1645 ntTSL 2 BASIC22.41■■□□□ 1.18
CBX4O00257 WRNIP1-205ENST00000618555 2651 ntAPPRIS P1 TSL 1 (best) BASIC22.41■■□□□ 1.18
CBX4O00257 ZPBP2-201ENST00000348931 1543 ntAPPRIS P4 TSL 1 (best) BASIC22.41■■□□□ 1.18
CBX4O00257 OLIG1-201ENST00000382348 2277 ntAPPRIS P1 BASIC22.41■■□□□ 1.18
CBX4O00257 MPND-202ENST00000359935 1475 ntAPPRIS ALT2 TSL 2 BASIC22.41■■□□□ 1.18
CBX4O00257 CLDN5-203ENST00000413119 1760 ntTSL 2 BASIC22.4■■□□□ 1.18
CBX4O00257 RCN2-202ENST00000394883 1366 ntTSL 5 BASIC22.4■■□□□ 1.18
CBX4O00257 PLEKHF1-204ENST00000592810 1357 ntAPPRIS P1 TSL 1 (best) BASIC22.4■■□□□ 1.18
CBX4O00257 ARPC5L-201ENST00000259477 1325 ntAPPRIS P1 TSL 1 (best) BASIC22.4■■□□□ 1.18
CBX4O00257 ZEB1-AS1-201ENST00000423714 456 ntTSL 3 BASIC22.4■■□□□ 1.18
CBX4O00257 H1FX-AS1-204ENST00000511998 917 ntTSL 5 BASIC22.4■■□□□ 1.18
CBX4O00257 LINC01574-201ENST00000512115 560 ntTSL 2 BASIC22.4■■□□□ 1.18
CBX4O00257 GALNS-211ENST00000568311 703 ntTSL 1 (best) BASIC22.4■■□□□ 1.18
CBX4O00257 EPCAM-202ENST00000405271 1530 ntTSL 5 BASIC22.4■■□□□ 1.18
CBX4O00257 RGS6-209ENST00000553525 2005 ntAPPRIS ALT1 TSL 2 BASIC22.4■■□□□ 1.18
CBX4O00257 C9orf163-202ENST00000624034 2573 ntBASIC22.4■■□□□ 1.18
CBX4O00257 IGFBP1-201ENST00000275525 1653 ntAPPRIS P2 TSL 1 (best) BASIC22.39■■□□□ 1.18
CBX4O00257 KCNQ4-204ENST00000509682 1926 ntAPPRIS ALT2 TSL 5 BASIC22.39■■□□□ 1.18
CBX4O00257 HSD11B1L-217ENST00000581521 1884 ntAPPRIS P3 TSL 5 BASIC22.39■■□□□ 1.18
CBX4O00257 HES3-201ENST00000377898 697 ntAPPRIS P1 TSL 2 BASIC22.39■■□□□ 1.17
CBX4O00257 RHOF-204ENST00000537265 699 ntTSL 2 BASIC22.39■■□□□ 1.17
CBX4O00257 MCRIP1-205ENST00000572645 1038 ntTSL 1 (best) BASIC22.39■■□□□ 1.17
CBX4O00257 AC006538.2-201ENST00000586572 543 ntAPPRIS P1 TSL 4 BASIC22.39■■□□□ 1.17
CBX4O00257 ADSS-201ENST00000366535 2780 ntAPPRIS P1 TSL 1 (best) BASIC22.39■■□□□ 1.17
Retrieved 100 of 98,524 protein–RNA pairs in 16.5 ms