Protein–RNA interactions for Protein: A0A0B4J244

TRAV3, T-cell receptor alpha variable 3 (gene/pseudogene) (Fragment), humanhuman

Predictions only

Length 114 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAV3A0A0B4J244 RNASEH2B-201ENST00000336617 1629 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
TRAV3A0A0B4J244 DCTD-201ENST00000357067 1931 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
TRAV3A0A0B4J244 FEZ1-202ENST00000366139 1053 ntTSL 2 BASIC17.69■□□□□ 0.42
TRAV3A0A0B4J244 CD72-202ENST00000378430 585 ntTSL 3 BASIC17.69■□□□□ 0.42
TRAV3A0A0B4J244 AC239859.2-201ENST00000444165 318 ntBASIC17.69■□□□□ 0.42
TRAV3A0A0B4J244 NEURL1B-203ENST00000522853 1263 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
TRAV3A0A0B4J244 FAM173A-207ENST00000569529 1052 ntAPPRIS P3 TSL 1 (best) BASIC17.69■□□□□ 0.42
TRAV3A0A0B4J244 GDF6-202ENST00000620978 973 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
TRAV3A0A0B4J244 CACNA1H-210ENST00000638323 8048 ntAPPRIS ALT2 TSL 5 BASIC17.69■□□□□ 0.42
TRAV3A0A0B4J244 SOHLH1-202ENST00000425225 1411 ntAPPRIS ALT2 TSL 5 BASIC17.69■□□□□ 0.42
TRAV3A0A0B4J244 ANKHD1-205ENST00000394723 2135 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
TRAV3A0A0B4J244 YY1AP1-214ENST00000407221 2705 ntAPPRIS ALT2 TSL 2 BASIC17.69■□□□□ 0.42
TRAV3A0A0B4J244 PFKFB4-202ENST00000383734 1491 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
TRAV3A0A0B4J244 COMT-206ENST00000407537 1457 ntAPPRIS P3 TSL 5 BASIC17.69■□□□□ 0.42
TRAV3A0A0B4J244 SLC35A2-210ENST00000616181 1614 ntTSL 2 BASIC17.69■□□□□ 0.42
TRAV3A0A0B4J244 CBWD5-207ENST00000382405 1791 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
TRAV3A0A0B4J244 SIMC1-204ENST00000430704 1925 ntAPPRIS P3 TSL 2 BASIC17.68■□□□□ 0.42
TRAV3A0A0B4J244 PLEKHO1-201ENST00000369124 2050 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
TRAV3A0A0B4J244 CSNK1G2-201ENST00000255641 2918 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
TRAV3A0A0B4J244 EFS-203ENST00000429593 2610 ntTSL 2 BASIC17.68■□□□□ 0.42
TRAV3A0A0B4J244 LRRC34-201ENST00000446859 1718 ntAPPRIS ALT2 TSL 2 BASIC17.68■□□□□ 0.42
TRAV3A0A0B4J244 LINC01960-201ENST00000563759 1884 ntBASIC17.68■□□□□ 0.42
TRAV3A0A0B4J244 Z92544.1-202ENST00000571933 1220 ntBASIC17.68■□□□□ 0.42
TRAV3A0A0B4J244 AC138207.2-201ENST00000583377 492 ntTSL 2 BASIC17.68■□□□□ 0.42
TRAV3A0A0B4J244 POTED-202ENST00000620442 1988 ntAPPRIS ALT2 TSL 1 (best) BASIC17.68■□□□□ 0.42
TRAV3A0A0B4J244 NAE1-204ENST00000394074 1654 ntTSL 5 BASIC17.67■□□□□ 0.42
TRAV3A0A0B4J244 TMEM198B-205ENST00000487582 1581 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
TRAV3A0A0B4J244 FAM107A-203ENST00000447756 1432 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
TRAV3A0A0B4J244 EVA1B-201ENST00000270824 1054 ntAPPRIS P1 TSL 2 BASIC17.67■□□□□ 0.42
TRAV3A0A0B4J244 AC133065.2-201ENST00000573379 2147 ntTSL 2 BASIC17.67■□□□□ 0.42
TRAV3A0A0B4J244 AC009086.3-201ENST00000623486 1008 ntBASIC17.67■□□□□ 0.42
TRAV3A0A0B4J244 SH3RF3-AS1-201ENST00000567491 1604 ntBASIC17.67■□□□□ 0.42
TRAV3A0A0B4J244 AC004687.1-201ENST00000579003 1625 ntBASIC17.67■□□□□ 0.42
TRAV3A0A0B4J244 RBM38-203ENST00000356208 2382 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
TRAV3A0A0B4J244 ZSWIM7-201ENST00000399277 2008 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
TRAV3A0A0B4J244 PPAN-201ENST00000253107 1657 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
TRAV3A0A0B4J244 PPP1R12B-202ENST00000356764 1687 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
TRAV3A0A0B4J244 RALGPS1-207ENST00000394022 1672 ntTSL 2 BASIC17.67■□□□□ 0.42
TRAV3A0A0B4J244 FBXW4P1-201ENST00000426721 2239 ntBASIC17.67■□□□□ 0.42
TRAV3A0A0B4J244 TARBP2-201ENST00000266987 1867 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
TRAV3A0A0B4J244 ZDHHC20-203ENST00000400590 1869 ntAPPRIS ALT2 TSL 5 BASIC17.67■□□□□ 0.42
TRAV3A0A0B4J244 FAM83D-201ENST00000619304 2475 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
TRAV3A0A0B4J244 SPPL2B-211ENST00000614794 1559 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
TRAV3A0A0B4J244 BTBD17-201ENST00000375366 1805 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
TRAV3A0A0B4J244 TRIM7-202ENST00000334421 1228 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
TRAV3A0A0B4J244 TSPY9P-201ENST00000440215 945 ntBASIC17.66■□□□□ 0.42
TRAV3A0A0B4J244 TSPY11P-201ENST00000442607 1045 ntBASIC17.66■□□□□ 0.42
TRAV3A0A0B4J244 AC092343.1-201ENST00000500224 729 ntTSL 3 BASIC17.66■□□□□ 0.42
TRAV3A0A0B4J244 NAA30-202ENST00000554703 795 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
TRAV3A0A0B4J244 NPY4R-201ENST00000374312 1956 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
TRAV3A0A0B4J244 FAHD1-201ENST00000382666 1964 ntTSL 2 BASIC17.66■□□□□ 0.42
TRAV3A0A0B4J244 NPY4R2-201ENST00000576178 1956 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
TRAV3A0A0B4J244 GPR27-201ENST00000304411 2447 ntAPPRIS P1 BASIC17.66■□□□□ 0.42
TRAV3A0A0B4J244 TRIM3-201ENST00000345851 2879 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
TRAV3A0A0B4J244 KREMEN2-203ENST00000571007 1877 ntTSL 2 BASIC17.65■□□□□ 0.42
TRAV3A0A0B4J244 MPND-202ENST00000359935 1475 ntAPPRIS ALT2 TSL 2 BASIC17.65■□□□□ 0.42
TRAV3A0A0B4J244 ZNF410-206ENST00000540593 1722 ntTSL 2 BASIC17.65■□□□□ 0.42
TRAV3A0A0B4J244 RNPEP-201ENST00000295640 2427 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
TRAV3A0A0B4J244 NKIRAS2-209ENST00000479407 992 ntTSL 3 BASIC17.65■□□□□ 0.42
TRAV3A0A0B4J244 AC073111.5-204ENST00000498682 1167 ntAPPRIS P1 TSL 2 BASIC17.65■□□□□ 0.42
TRAV3A0A0B4J244 AC010997.5-201ENST00000609182 354 ntBASIC17.65■□□□□ 0.42
TRAV3A0A0B4J244 UBA5-208ENST00000473651 1513 ntTSL 5 BASIC17.65■□□□□ 0.42
TRAV3A0A0B4J244 RBMS1-205ENST00000409972 1815 ntTSL 5 BASIC17.65■□□□□ 0.42
TRAV3A0A0B4J244 AVPR2-201ENST00000337474 1622 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
TRAV3A0A0B4J244 NEURL4-202ENST00000399464 5200 ntAPPRIS P4 TSL 1 (best) BASIC17.65■□□□□ 0.42
TRAV3A0A0B4J244 NANOS2-201ENST00000341294 1657 ntAPPRIS P1 BASIC17.64■□□□□ 0.42
TRAV3A0A0B4J244 NR5A1-204ENST00000620110 2975 ntTSL 5 BASIC17.64■□□□□ 0.42
TRAV3A0A0B4J244 RMI2-201ENST00000312499 1457 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
TRAV3A0A0B4J244 KLC3-204ENST00000585434 1764 ntAPPRIS ALT1 TSL 1 (best) BASIC17.64■□□□□ 0.41
TRAV3A0A0B4J244 ANKRD19P-205ENST00000473204 2370 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
TRAV3A0A0B4J244 KCNT1-201ENST00000263604 5245 ntAPPRIS ALT2 TSL 5 BASIC17.64■□□□□ 0.41
TRAV3A0A0B4J244 LSM4-201ENST00000252816 986 ntTSL 2 BASIC17.64■□□□□ 0.41
TRAV3A0A0B4J244 MDK-202ENST00000395565 951 ntAPPRIS P2 TSL 2 BASIC17.64■□□□□ 0.41
TRAV3A0A0B4J244 AC009299.2-201ENST00000482477 511 ntBASIC17.64■□□□□ 0.41
TRAV3A0A0B4J244 EXOG-217ENST00000630638 197 ntTSL 5 BASIC17.64■□□□□ 0.41
TRAV3A0A0B4J244 AC233992.2-201ENST00000531225 1596 ntAPPRIS P1 TSL 2 BASIC17.64■□□□□ 0.41
TRAV3A0A0B4J244 TOX2-201ENST00000341197 1880 ntAPPRIS P1 TSL 2 BASIC17.64■□□□□ 0.41
TRAV3A0A0B4J244 HOXC8-201ENST00000040584 1889 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
TRAV3A0A0B4J244 PARD3-209ENST00000374790 5825 ntTSL 5 BASIC17.64■□□□□ 0.41
TRAV3A0A0B4J244 TRIM54-202ENST00000380075 1967 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
TRAV3A0A0B4J244 MYCN-201ENST00000281043 2602 ntAPPRIS P1 TSL 5 BASIC17.64■□□□□ 0.41
TRAV3A0A0B4J244 DUX4-203ENST00000565211 1710 ntAPPRIS P2 TSL 1 (best) BASIC17.64■□□□□ 0.41
TRAV3A0A0B4J244 BAALC-205ENST00000438105 2662 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
TRAV3A0A0B4J244 CDK5-204ENST00000485972 1758 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
TRAV3A0A0B4J244 AL391650.1-201ENST00000448923 1468 ntAPPRIS P1 TSL 2 BASIC17.63■□□□□ 0.41
TRAV3A0A0B4J244 AC096677.1-201ENST00000454651 1516 ntTSL 2 BASIC17.63■□□□□ 0.41
TRAV3A0A0B4J244 ANKLE2-201ENST00000357997 4646 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
TRAV3A0A0B4J244 OLIG2-202ENST00000382357 2578 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
TRAV3A0A0B4J244 HADH-201ENST00000309522 1912 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
TRAV3A0A0B4J244 PHACTR3-202ENST00000359926 2252 ntTSL 2 BASIC17.63■□□□□ 0.41
TRAV3A0A0B4J244 PHLDB3-207ENST00000599242 2286 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
TRAV3A0A0B4J244 TST-201ENST00000249042 1211 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
TRAV3A0A0B4J244 TFPT-201ENST00000391757 774 ntTSL 5 BASIC17.63■□□□□ 0.41
TRAV3A0A0B4J244 TFPT-202ENST00000391758 804 ntAPPRIS ALT2 TSL 1 (best) BASIC17.63■□□□□ 0.41
TRAV3A0A0B4J244 C1orf232-201ENST00000634842 643 ntAPPRIS P5 TSL 5 BASIC17.63■□□□□ 0.41
TRAV3A0A0B4J244 CNTFR-202ENST00000378980 2052 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
TRAV3A0A0B4J244 LIMS2-201ENST00000324938 2111 ntAPPRIS P3 TSL 1 (best) BASIC17.63■□□□□ 0.41
TRAV3A0A0B4J244 CLDN15-201ENST00000308344 1370 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
TRAV3A0A0B4J244 ACAD8-202ENST00000374752 1797 ntTSL 2 BASIC17.63■□□□□ 0.41
TRAV3A0A0B4J244 CFP-202ENST00000377005 1435 ntAPPRIS ALT2 TSL 1 (best) BASIC17.63■□□□□ 0.41
Retrieved 100 of 98,524 protein–RNA pairs in 19.6 ms