Protein–RNA interactions for Protein: Q2UY09

COL28A1, Collagen alpha-1(XXVIII) chain, humanhuman

Predictions only

Length 1,125 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1Q2UY09 AP001107.9-202ENST00000531602 613 ntTSL 2 BASIC12.79□□□□□ -0.36
COL28A1Q2UY09 AC092720.1-202ENST00000565824 555 ntTSL 4 BASIC12.79□□□□□ -0.36
COL28A1Q2UY09 IRF3-213ENST00000596765 710 ntTSL 1 (best) BASIC12.79□□□□□ -0.36
COL28A1Q2UY09 AL049840.2-201ENST00000602722 535 ntBASIC12.79□□□□□ -0.36
COL28A1Q2UY09 PDZRN3-AS1-203ENST00000608743 780 ntTSL 5 BASIC12.79□□□□□ -0.36
COL28A1Q2UY09 MIR8071-1-201ENST00000616769 65 ntBASIC12.79□□□□□ -0.36
COL28A1Q2UY09 MIR8071-2-201ENST00000616772 65 ntBASIC12.79□□□□□ -0.36
COL28A1Q2UY09 ADAMTSL4-AS1-203ENST00000617352 1036 ntTSL 5 BASIC12.79□□□□□ -0.36
COL28A1Q2UY09 ADORA3-204ENST00000632535 1201 ntTSL 3 BASIC12.79□□□□□ -0.36
COL28A1Q2UY09 TMEM211-203ENST00000640159 1122 ntAPPRIS P1 TSL 5 BASIC12.79□□□□□ -0.36
COL28A1Q2UY09 AL139424.3-202ENST00000641619 917 ntBASIC12.79□□□□□ -0.36
COL28A1Q2UY09 TRDMT1-203ENST00000377799 3527 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
COL28A1Q2UY09 AFAP1-203ENST00000382543 2590 ntAPPRIS ALT1 TSL 5 BASIC12.79□□□□□ -0.36
COL28A1Q2UY09 AC016245.1-201ENST00000570335 3204 ntTSL 2 BASIC12.79□□□□□ -0.36
COL28A1Q2UY09 BTBD9-206ENST00000481247 8525 ntAPPRIS P1 TSL 5 BASIC12.79□□□□□ -0.36
COL28A1Q2UY09 TUBGCP4-201ENST00000260383 2617 ntAPPRIS ALT1 TSL 1 (best) BASIC12.79□□□□□ -0.36
COL28A1Q2UY09 AC244197.3-201ENST00000422081 2635 ntAPPRIS P1 TSL 2 BASIC12.79□□□□□ -0.36
COL28A1Q2UY09 TUBA3GP-201ENST00000410028 1325 ntBASIC12.79□□□□□ -0.36
COL28A1Q2UY09 AC124944.3-201ENST00000607976 1304 ntBASIC12.79□□□□□ -0.36
COL28A1Q2UY09 SLC37A3-201ENST00000326232 3349 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
COL28A1Q2UY09 EIF4G1-219ENST00000435046 4668 ntTSL 5 BASIC12.79□□□□□ -0.36
COL28A1Q2UY09 LINC01535-206ENST00000592712 1699 ntTSL 1 (best) BASIC12.79□□□□□ -0.36
COL28A1Q2UY09 AC093462.1-201ENST00000621167 1683 ntBASIC12.79□□□□□ -0.36
COL28A1Q2UY09 NCSTN-202ENST00000368063 3031 ntTSL 1 (best) BASIC12.79□□□□□ -0.36
COL28A1Q2UY09 LMAN2L-202ENST00000377079 2020 ntAPPRIS ALT2 TSL 1 (best) BASIC12.79□□□□□ -0.36
COL28A1Q2UY09 PP14571-202ENST00000404891 2017 ntTSL 2 BASIC12.79□□□□□ -0.36
COL28A1Q2UY09 DDC-207ENST00000444124 2041 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
COL28A1Q2UY09 MGRN1-203ENST00000415496 6405 ntAPPRIS ALT2 TSL 1 (best) BASIC12.79□□□□□ -0.36
COL28A1Q2UY09 PTH2R-201ENST00000272847 2713 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
COL28A1Q2UY09 AL031590.1-202ENST00000641466 1737 ntBASIC12.79□□□□□ -0.36
COL28A1Q2UY09 CPNE5-201ENST00000244751 3897 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
COL28A1Q2UY09 SFPQP1-201ENST00000446621 1786 ntBASIC12.79□□□□□ -0.36
COL28A1Q2UY09 SLC47A1-206ENST00000571335 1415 ntTSL 1 (best) BASIC12.79□□□□□ -0.36
COL28A1Q2UY09 EPRS-201ENST00000366923 5014 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
COL28A1Q2UY09 AMIGO3-201ENST00000320431 2862 ntAPPRIS P1 BASIC12.79□□□□□ -0.36
COL28A1Q2UY09 OR52A1-202ENST00000380367 9783 ntAPPRIS P1 BASIC12.79□□□□□ -0.36
COL28A1Q2UY09 PRAME-205ENST00000405655 2179 ntAPPRIS P2 TSL 1 (best) BASIC12.79□□□□□ -0.36
COL28A1Q2UY09 SALL2-205ENST00000611430 1466 ntTSL 1 (best) BASIC12.78□□□□□ -0.36
COL28A1Q2UY09 CHMP7-201ENST00000313219 3367 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
COL28A1Q2UY09 MSH5-202ENST00000375740 2669 ntTSL 1 (best) BASIC12.78□□□□□ -0.36
COL28A1Q2UY09 CES3-201ENST00000303334 3834 ntAPPRIS P3 TSL 1 (best) BASIC12.78□□□□□ -0.36
COL28A1Q2UY09 AP4M1-204ENST00000421755 1572 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
COL28A1Q2UY09 TRIM46-205ENST00000392451 3195 ntTSL 2 BASIC12.78□□□□□ -0.36
COL28A1Q2UY09 LINC01114-203ENST00000425879 2434 ntTSL 2 BASIC12.78□□□□□ -0.36
COL28A1Q2UY09 SUGP2-203ENST00000452918 6176 ntAPPRIS P3 TSL 1 (best) BASIC12.78□□□□□ -0.36
COL28A1Q2UY09 CKS2-201ENST00000314355 613 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
COL28A1Q2UY09 MIR766-201ENST00000390223 111 ntBASIC12.78□□□□□ -0.36
COL28A1Q2UY09 RFNG-202ENST00000429557 994 ntTSL 5 BASIC12.78□□□□□ -0.36
COL28A1Q2UY09 AC114939.1-201ENST00000520980 514 ntTSL 5 BASIC12.78□□□□□ -0.36
COL28A1Q2UY09 FAM213AP2-201ENST00000521579 683 ntBASIC12.78□□□□□ -0.36
COL28A1Q2UY09 RPL10P8-201ENST00000522888 313 ntBASIC12.78□□□□□ -0.36
COL28A1Q2UY09 OR4A49P-201ENST00000527050 632 ntBASIC12.78□□□□□ -0.36
COL28A1Q2UY09 ALG10B-203ENST00000551464 571 ntTSL 3 BASIC12.78□□□□□ -0.36
COL28A1Q2UY09 PEX11A-204ENST00000561224 529 ntTSL 4 BASIC12.78□□□□□ -0.36
COL28A1Q2UY09 AC133555.4-201ENST00000569081 152 ntBASIC12.78□□□□□ -0.36
COL28A1Q2UY09 AC005920.4-201ENST00000573301 492 ntTSL 4 BASIC12.78□□□□□ -0.36
COL28A1Q2UY09 CYB5D2-202ENST00000573984 495 ntTSL 4 BASIC12.78□□□□□ -0.36
COL28A1Q2UY09 MIR4459-201ENST00000581837 66 ntBASIC12.78□□□□□ -0.36
COL28A1Q2UY09 AC016590.1-201ENST00000588763 420 ntTSL 2 BASIC12.78□□□□□ -0.36
COL28A1Q2UY09 FAM223B-202ENST00000598177 713 ntBASIC12.78□□□□□ -0.36
COL28A1Q2UY09 AL031768.1-201ENST00000606542 701 ntBASIC12.78□□□□□ -0.36
COL28A1Q2UY09 TNFRSF10A-204ENST00000613472 978 ntTSL 1 (best) BASIC12.78□□□□□ -0.36
COL28A1Q2UY09 AC091905.3-201ENST00000624959 234 ntBASIC12.78□□□□□ -0.36
COL28A1Q2UY09 FAM223A-202ENST00000625204 713 ntBASIC12.78□□□□□ -0.36
COL28A1Q2UY09 DUX4L33-201ENST00000635217 958 ntBASIC12.78□□□□□ -0.36
COL28A1Q2UY09 AC245369.8-201ENST00000636589 306 ntBASIC12.78□□□□□ -0.36
COL28A1Q2UY09 BCKDHA-202ENST00000457836 1745 ntTSL 2 BASIC12.78□□□□□ -0.36
COL28A1Q2UY09 NLGN3-201ENST00000358741 3046 ntAPPRIS P4 TSL 5 BASIC12.78□□□□□ -0.36
COL28A1Q2UY09 TYK2-205ENST00000525621 4347 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
COL28A1Q2UY09 TTN-AS1-264ENST00000627564 1319 ntTSL 5 BASIC12.78□□□□□ -0.36
COL28A1Q2UY09 SSBP2-220ENST00000615665 4465 ntTSL 5 BASIC12.78□□□□□ -0.36
COL28A1Q2UY09 ZNF135-205ENST00000511556 2253 ntAPPRIS P3 TSL 2 BASIC12.78□□□□□ -0.36
COL28A1Q2UY09 GTPBP4-202ENST00000360803 5075 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
COL28A1Q2UY09 SMPDL3B-202ENST00000373894 1878 ntAPPRIS P4 TSL 1 (best) BASIC12.78□□□□□ -0.36
COL28A1Q2UY09 GLP2R-204ENST00000574745 1882 ntTSL 2 BASIC12.78□□□□□ -0.36
COL28A1Q2UY09 ALPK3-201ENST00000258888 10917 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
COL28A1Q2UY09 SMAGP-203ENST00000603798 2350 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
COL28A1Q2UY09 WNT8A-202ENST00000398754 1498 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
COL28A1Q2UY09 LIPA-205ENST00000456827 2527 ntTSL 3 BASIC12.78□□□□□ -0.36
COL28A1Q2UY09 PPARG-205ENST00000397010 2017 ntAPPRIS ALT1 TSL 1 (best) BASIC12.78□□□□□ -0.36
COL28A1Q2UY09 TRPA1-201ENST00000262209 5223 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.36
COL28A1Q2UY09 Z98885.2-201ENST00000565177 1567 ntTSL 2 BASIC12.77□□□□□ -0.36
COL28A1Q2UY09 MYO15B-236ENST00000633867 6323 ntTSL 5 BASIC12.77□□□□□ -0.36
COL28A1Q2UY09 MCPH1-AS1-201ENST00000515608 2147 ntTSL 5 BASIC12.77□□□□□ -0.36
COL28A1Q2UY09 RFESD-201ENST00000311364 2722 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.36
COL28A1Q2UY09 PLEKHG2-206ENST00000458508 3898 ntAPPRIS ALT2 TSL 2 BASIC12.77□□□□□ -0.36
COL28A1Q2UY09 ENG-204ENST00000480266 2804 ntAPPRIS ALT2 TSL 2 BASIC12.77□□□□□ -0.36
COL28A1Q2UY09 CALCOCO1-218ENST00000550804 2291 ntAPPRIS P2 TSL 1 (best) BASIC12.77□□□□□ -0.36
COL28A1Q2UY09 COL18A1-AS1-201ENST00000397787 3425 ntTSL 1 (best) BASIC12.77□□□□□ -0.36
COL28A1Q2UY09 EPN2-205ENST00000395626 2863 ntTSL 2 BASIC12.77□□□□□ -0.36
COL28A1Q2UY09 PDE2A-203ENST00000418754 2855 ntTSL 2 BASIC12.77□□□□□ -0.36
COL28A1Q2UY09 ZNF263-202ENST00000538765 1721 ntTSL 2 BASIC12.77□□□□□ -0.36
COL28A1Q2UY09 LMBRD2-201ENST00000296603 8185 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.36
COL28A1Q2UY09 Z98885.3-201ENST00000624882 1757 ntBASIC12.77□□□□□ -0.36
COL28A1Q2UY09 HPSE2-206ENST00000628193 1760 ntTSL 1 (best) BASIC12.77□□□□□ -0.36
COL28A1Q2UY09 CRY2-202ENST00000443527 4203 ntAPPRIS P2 TSL 1 (best) BASIC12.77□□□□□ -0.36
COL28A1Q2UY09 CCT3-204ENST00000368259 1815 ntTSL 2 BASIC12.77□□□□□ -0.37
COL28A1Q2UY09 TLE3-211ENST00000557997 3683 ntAPPRIS ALT1 TSL 1 (best) BASIC12.77□□□□□ -0.37
COL28A1Q2UY09 TRIM69-206ENST00000559390 2486 ntAPPRIS P1 TSL 2 BASIC12.77□□□□□ -0.37
COL28A1Q2UY09 NPPA-202ENST00000376480 855 ntAPPRIS P2 TSL 1 (best) BASIC12.77□□□□□ -0.37
Retrieved 100 of 98,524 protein–RNA pairs in 57.1 ms