Protein–RNA interactions for Protein: Q9NY46

SCN3A, Sodium channel protein type 3 subunit alpha, humanhuman

Predictions only

Length 2,000 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SCN3AQ9NY46 LACTBL1-201ENST00000426928 1641 ntAPPRIS P5 TSL 5 BASIC20.97■□□□□ 0.95
SCN3AQ9NY46 SUMF1-201ENST00000272902 2159 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
SCN3AQ9NY46 CFP-202ENST00000377005 1435 ntAPPRIS ALT2 TSL 1 (best) BASIC20.96■□□□□ 0.95
SCN3AQ9NY46 MTMR14-206ENST00000420925 1427 ntAPPRIS ALT2 TSL 2 BASIC20.96■□□□□ 0.95
SCN3AQ9NY46 LINC01960-201ENST00000563759 1884 ntBASIC20.96■□□□□ 0.95
SCN3AQ9NY46 KLC1-205ENST00000380038 2322 ntTSL 2 BASIC20.96■□□□□ 0.95
SCN3AQ9NY46 FXYD7-201ENST00000270310 712 ntAPPRIS P2 TSL 1 (best) BASIC20.96■□□□□ 0.95
SCN3AQ9NY46 LIN7B-202ENST00000391864 582 ntTSL 3 BASIC20.96■□□□□ 0.95
SCN3AQ9NY46 FAM66C-205ENST00000456135 1216 ntTSL 5 BASIC20.96■□□□□ 0.95
SCN3AQ9NY46 SCO2-204ENST00000543927 1051 ntAPPRIS P1 TSL 2 BASIC20.96■□□□□ 0.95
SCN3AQ9NY46 AC133561.4-201ENST00000566112 224 ntBASIC20.96■□□□□ 0.95
SCN3AQ9NY46 PPP1R14A-205ENST00000591585 949 ntTSL 2 BASIC20.96■□□□□ 0.95
SCN3AQ9NY46 AC008764.7-201ENST00000593779 1081 ntBASIC20.96■□□□□ 0.95
SCN3AQ9NY46 HOXB7-201ENST00000239165 1371 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
SCN3AQ9NY46 ABHD16B-201ENST00000369916 1491 ntAPPRIS P1 BASIC20.96■□□□□ 0.95
SCN3AQ9NY46 AGAP3-201ENST00000335367 2675 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
SCN3AQ9NY46 PRSS29P-202ENST00000568091 1864 ntTSL 5 BASIC20.96■□□□□ 0.95
SCN3AQ9NY46 ADAM22-209ENST00000439864 2576 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
SCN3AQ9NY46 SLC19A1-212ENST00000567670 2029 ntAPPRIS ALT2 TSL 1 (best) BASIC20.96■□□□□ 0.95
SCN3AQ9NY46 KLC1-227ENST00000634686 2229 ntTSL 5 BASIC20.96■□□□□ 0.95
SCN3AQ9NY46 RBM4B-203ENST00000525754 2339 ntAPPRIS P1 TSL 2 BASIC20.96■□□□□ 0.95
SCN3AQ9NY46 NAA38-201ENST00000333775 999 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
SCN3AQ9NY46 DONSON-202ENST00000303113 2028 ntTSL 5 BASIC20.95■□□□□ 0.94
SCN3AQ9NY46 MRPS2-202ENST00000371785 1640 ntAPPRIS P1 TSL 3 BASIC20.95■□□□□ 0.94
SCN3AQ9NY46 AC136469.2-201ENST00000623944 1028 ntBASIC20.95■□□□□ 0.94
SCN3AQ9NY46 AC092902.2-206ENST00000625484 846 ntTSL 5 BASIC20.95■□□□□ 0.94
SCN3AQ9NY46 SCAND1-202ENST00000373991 1727 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
SCN3AQ9NY46 FBXO33-202ENST00000554190 534 ntTSL 3 BASIC20.94■□□□□ 0.94
SCN3AQ9NY46 STX4-201ENST00000313843 1481 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
SCN3AQ9NY46 FNTA-208ENST00000529687 1950 ntTSL 2 BASIC20.94■□□□□ 0.94
SCN3AQ9NY46 IPO9-AS1-201ENST00000413035 839 ntTSL 3 BASIC20.94■□□□□ 0.94
SCN3AQ9NY46 IL17RE-201ENST00000383814 2704 ntAPPRIS P2 TSL 1 (best) BASIC20.93■□□□□ 0.94
SCN3AQ9NY46 AL137002.2-201ENST00000639766 2238 ntTSL 5 BASIC20.93■□□□□ 0.94
SCN3AQ9NY46 NAPRT-204ENST00000449291 1965 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
SCN3AQ9NY46 EFCC1-201ENST00000436022 2691 ntAPPRIS P1 TSL 5 BASIC20.93■□□□□ 0.94
SCN3AQ9NY46 PIKFYVE-203ENST00000392202 2039 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
SCN3AQ9NY46 CENPH-201ENST00000283006 1389 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
SCN3AQ9NY46 SDSL-201ENST00000345635 1397 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
SCN3AQ9NY46 AC142381.2-201ENST00000566120 298 ntBASIC20.93■□□□□ 0.94
SCN3AQ9NY46 SCUBE1-208ENST00000615096 1119 ntTSL 2 BASIC20.93■□□□□ 0.94
SCN3AQ9NY46 AC091982.4-201ENST00000623943 726 ntTSL 2 BASIC20.93■□□□□ 0.94
SCN3AQ9NY46 ZNHIT2-201ENST00000310597 1306 ntAPPRIS P1 BASIC20.93■□□□□ 0.94
SCN3AQ9NY46 MPND-202ENST00000359935 1475 ntAPPRIS ALT2 TSL 2 BASIC20.93■□□□□ 0.94
SCN3AQ9NY46 SRPK3-202ENST00000370101 1958 ntAPPRIS P3 TSL 1 (best) BASIC20.93■□□□□ 0.94
SCN3AQ9NY46 RALB-201ENST00000272519 2344 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
SCN3AQ9NY46 MIS18A-201ENST00000290130 1575 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
SCN3AQ9NY46 AC099791.1-201ENST00000416440 715 ntBASIC20.92■□□□□ 0.94
SCN3AQ9NY46 AC005837.3-201ENST00000612163 286 ntBASIC20.92■□□□□ 0.94
SCN3AQ9NY46 RNF4-207ENST00000506706 2098 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
SCN3AQ9NY46 CDR2-201ENST00000268383 2702 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
SCN3AQ9NY46 ZSCAN18-212ENST00000600404 1934 ntAPPRIS ALT2 TSL 2 BASIC20.92■□□□□ 0.94
SCN3AQ9NY46 BMP6-201ENST00000283147 2780 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
SCN3AQ9NY46 AC133561.1-201ENST00000568600 2415 ntBASIC20.92■□□□□ 0.94
SCN3AQ9NY46 DIRAS1-202ENST00000585334 774 ntAPPRIS P1 BASIC20.92■□□□□ 0.94
SCN3AQ9NY46 GSX2-205ENST00000611459 1262 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
SCN3AQ9NY46 SPOCK3-222ENST00000512681 1457 ntTSL 2 BASIC20.92■□□□□ 0.94
SCN3AQ9NY46 CCDC154-201ENST00000389176 2212 ntAPPRIS P5 TSL 5 BASIC20.92■□□□□ 0.94
SCN3AQ9NY46 PPP1R12B-202ENST00000356764 1687 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
SCN3AQ9NY46 ARPC5L-201ENST00000259477 1325 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
SCN3AQ9NY46 SLC39A14-202ENST00000289952 2137 ntAPPRIS ALT2 TSL 2 BASIC20.91■□□□□ 0.94
SCN3AQ9NY46 TSKS-202ENST00000358830 1367 ntAPPRIS ALT2 TSL 1 (best) BASIC20.91■□□□□ 0.94
SCN3AQ9NY46 HMGA2-203ENST00000393578 1993 ntAPPRIS ALT1 TSL 1 (best) BASIC20.91■□□□□ 0.94
SCN3AQ9NY46 RASSF10-201ENST00000529419 2530 ntAPPRIS P1 BASIC20.91■□□□□ 0.94
SCN3AQ9NY46 LAMTOR1-201ENST00000278671 1179 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
SCN3AQ9NY46 HSPE1-203ENST00000409729 478 ntTSL 2 BASIC20.91■□□□□ 0.94
SCN3AQ9NY46 CROT-202ENST00000412227 1213 ntTSL 1 (best) BASIC20.91■□□□□ 0.94
SCN3AQ9NY46 ZNRF2P3-201ENST00000424200 374 ntBASIC20.91■□□□□ 0.94
SCN3AQ9NY46 CACTIN-AS1-201ENST00000592274 1913 ntTSL 2 BASIC20.91■□□□□ 0.94
SCN3AQ9NY46 SDC3-202ENST00000339394 1580 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
SCN3AQ9NY46 GPIHBP1-201ENST00000622500 2282 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
SCN3AQ9NY46 TMEM259-201ENST00000333175 2581 ntAPPRIS P3 TSL 1 (best) BASIC20.91■□□□□ 0.94
SCN3AQ9NY46 ECE2-202ENST00000357474 2667 ntTSL 1 (best) BASIC20.91■□□□□ 0.94
SCN3AQ9NY46 YY1AP1-212ENST00000404643 2654 ntAPPRIS ALT2 TSL 1 (best) BASIC20.91■□□□□ 0.94
SCN3AQ9NY46 FAHD1-201ENST00000382666 1964 ntTSL 2 BASIC20.9■□□□□ 0.94
SCN3AQ9NY46 IQCJ-SCHIP1-203ENST00000476809 1780 ntAPPRIS ALT2 TSL 5 BASIC20.9■□□□□ 0.94
SCN3AQ9NY46 MRPL46-201ENST00000312475 1019 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
SCN3AQ9NY46 MRPL41-201ENST00000371443 1262 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
SCN3AQ9NY46 CCDC107-205ENST00000421582 1324 ntAPPRIS ALT2 TSL 2 BASIC20.9■□□□□ 0.94
SCN3AQ9NY46 HSF1-201ENST00000400780 2105 ntTSL 5 BASIC20.9■□□□□ 0.94
SCN3AQ9NY46 FBXO45-201ENST00000311630 5899 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
SCN3AQ9NY46 TERT-206ENST00000508104 2486 ntTSL 5 BASIC20.9■□□□□ 0.94
SCN3AQ9NY46 ZDHHC14-204ENST00000414563 3134 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
SCN3AQ9NY46 HSD11B1L-217ENST00000581521 1884 ntAPPRIS P3 TSL 5 BASIC20.9■□□□□ 0.94
SCN3AQ9NY46 FAM102B-202ENST00000405454 1585 ntAPPRIS ALT2 TSL 5 BASIC20.9■□□□□ 0.94
SCN3AQ9NY46 UBE2C-202ENST00000335046 737 ntTSL 2 BASIC20.9■□□□□ 0.94
SCN3AQ9NY46 CLPSL2-201ENST00000360454 488 ntAPPRIS ALT2 TSL 1 (best) BASIC20.9■□□□□ 0.94
SCN3AQ9NY46 PARD6B-202ENST00000396039 522 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
SCN3AQ9NY46 BX842568.3-201ENST00000418104 571 ntBASIC20.9■□□□□ 0.94
SCN3AQ9NY46 PGF-206ENST00000555567 1927 ntAPPRIS P3 TSL 1 (best) BASIC20.9■□□□□ 0.94
SCN3AQ9NY46 ERI3-201ENST00000372257 1684 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
SCN3AQ9NY46 KCNIP1-201ENST00000328939 2014 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
SCN3AQ9NY46 AP006623.1-201ENST00000506172 2061 ntTSL 5 BASIC20.9■□□□□ 0.94
SCN3AQ9NY46 GRK4-206ENST00000504933 1971 ntTSL 1 (best) BASIC20.89■□□□□ 0.94
SCN3AQ9NY46 WRAP73-201ENST00000270708 1665 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
SCN3AQ9NY46 MYD88-205ENST00000424893 1279 ntAPPRIS ALT2 TSL 1 (best) BASIC20.89■□□□□ 0.93
SCN3AQ9NY46 CAMTA1-208ENST00000473578 567 ntTSL 1 (best) BASIC20.89■□□□□ 0.93
SCN3AQ9NY46 AC126544.1-201ENST00000580842 1059 ntBASIC20.89■□□□□ 0.93
SCN3AQ9NY46 AL136967.2-201ENST00000623968 743 ntBASIC20.89■□□□□ 0.93
SCN3AQ9NY46 SLC2A8-203ENST00000373371 2172 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
SCN3AQ9NY46 CLDN5-203ENST00000413119 1760 ntTSL 2 BASIC20.89■□□□□ 0.93
Retrieved 100 of 98,524 protein–RNA pairs in 25.8 ms