Protein–RNA interactions for Protein: Q99626

CDX2, Homeobox protein CDX-2, humanhuman

Predicted RBP Predictions only

Length 313 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDX2Q99626 RARRES2P4-201ENST00000514074 484 ntBASIC23.54■■□□□ 1.36
CDX2Q99626 EIF3J-AS1-205ENST00000560750 1093 ntTSL 3 BASIC23.54■■□□□ 1.36
CDX2Q99626 C19orf84-201ENST00000570516 788 ntAPPRIS ALT2 TSL 1 (best) BASIC23.54■■□□□ 1.36
CDX2Q99626 AC005697.1-201ENST00000582441 582 ntAPPRIS P1 TSL 4 BASIC23.54■■□□□ 1.36
CDX2Q99626 FAM32A-205ENST00000589852 1168 ntTSL 1 (best) BASIC23.54■■□□□ 1.36
CDX2Q99626 ST3GAL5-214ENST00000638178 2034 ntTSL 5 BASIC23.54■■□□□ 1.36
CDX2Q99626 NRL-202ENST00000396997 1517 ntAPPRIS P1 TSL 1 (best) BASIC23.54■■□□□ 1.36
CDX2Q99626 XPA-201ENST00000375128 1417 ntAPPRIS P1 TSL 1 (best) BASIC23.53■■□□□ 1.36
CDX2Q99626 C7orf25-203ENST00000431882 1645 ntTSL 2 BASIC23.53■■□□□ 1.36
CDX2Q99626 LTC4S-202ENST00000401985 486 ntTSL 3 BASIC23.53■■□□□ 1.36
CDX2Q99626 AL390816.2-201ENST00000554252 737 ntTSL 3 BASIC23.53■■□□□ 1.36
CDX2Q99626 LIMD2-202ENST00000578061 756 ntAPPRIS P1 TSL 2 BASIC23.53■■□□□ 1.36
CDX2Q99626 AL512625.3-202ENST00000591993 1091 ntTSL 1 (best) BASIC23.53■■□□□ 1.36
CDX2Q99626 UBE2DNL-204ENST00000602536 740 ntBASIC23.53■■□□□ 1.36
CDX2Q99626 RRAS2-201ENST00000256196 1516 ntAPPRIS P1 TSL 1 (best) BASIC23.53■■□□□ 1.36
CDX2Q99626 C11orf80-204ENST00000525908 2135 ntAPPRIS P3 TSL 2 BASIC23.53■■□□□ 1.36
CDX2Q99626 PNLIPRP2-204ENST00000591655 1456 ntAPPRIS ALT1 TSL 5 BASIC23.52■■□□□ 1.36
CDX2Q99626 EIF4E3-203ENST00000421769 777 ntTSL 1 (best) BASIC23.52■■□□□ 1.36
CDX2Q99626 FAM210CP-201ENST00000445714 574 ntBASIC23.52■■□□□ 1.36
CDX2Q99626 ADM-205ENST00000528544 586 ntTSL 2 BASIC23.52■■□□□ 1.36
CDX2Q99626 AC010331.1-201ENST00000611423 582 ntBASIC23.52■■□□□ 1.36
CDX2Q99626 OSR2-210ENST00000523368 1519 ntTSL 1 (best) BASIC23.52■■□□□ 1.36
CDX2Q99626 ZNF419-203ENST00000354197 1569 ntTSL 5 BASIC23.52■■□□□ 1.36
CDX2Q99626 CD37-213ENST00000598095 1598 ntTSL 2 BASIC23.52■■□□□ 1.36
CDX2Q99626 GLTP-201ENST00000318348 2356 ntAPPRIS P1 TSL 1 (best) BASIC23.51■■□□□ 1.35
CDX2Q99626 ESRRAP1-201ENST00000400596 1257 ntBASIC23.51■■□□□ 1.35
CDX2Q99626 AC104187.1-201ENST00000607510 612 ntBASIC23.51■■□□□ 1.35
CDX2Q99626 AC092118.2-201ENST00000613495 667 ntBASIC23.51■■□□□ 1.35
CDX2Q99626 UQCR11-203ENST00000591899 1324 ntAPPRIS P1 TSL 1 (best) BASIC23.51■■□□□ 1.35
CDX2Q99626 AC064853.3-201ENST00000641801 1658 ntAPPRIS P1 BASIC23.51■■□□□ 1.35
CDX2Q99626 MEA1-201ENST00000244711 1089 ntAPPRIS P1 TSL 1 (best) BASIC23.5■■□□□ 1.35
CDX2Q99626 ECEL1P3-201ENST00000427961 737 ntBASIC23.5■■□□□ 1.35
CDX2Q99626 BNIP3L-204ENST00000520409 739 ntTSL 2 BASIC23.5■■□□□ 1.35
CDX2Q99626 MVB12A-212ENST00000543795 1154 ntAPPRIS P1 TSL 5 BASIC23.5■■□□□ 1.35
CDX2Q99626 MAX-217ENST00000557277 728 ntTSL 3 BASIC23.5■■□□□ 1.35
CDX2Q99626 SLC35A2-210ENST00000616181 1614 ntTSL 2 BASIC23.5■■□□□ 1.35
CDX2Q99626 RNF130-205ENST00000521389 2263 ntAPPRIS P1 TSL 1 (best) BASIC23.49■■□□□ 1.35
CDX2Q99626 CDC16-211ENST00000628084 2058 ntTSL 5 BASIC23.49■■□□□ 1.35
CDX2Q99626 NAE1-204ENST00000394074 1654 ntTSL 5 BASIC23.49■■□□□ 1.35
CDX2Q99626 ALDH1A3-203ENST00000557963 1670 ntBASIC23.49■■□□□ 1.35
CDX2Q99626 PRSS3-201ENST00000342836 1144 ntTSL 1 (best) BASIC23.49■■□□□ 1.35
CDX2Q99626 POLR3GL-201ENST00000369313 818 ntTSL 2 BASIC23.49■■□□□ 1.35
CDX2Q99626 GPR75-ASB3-201ENST00000406625 2113 ntAPPRIS P1 TSL 2 BASIC23.49■■□□□ 1.35
CDX2Q99626 BRI3-207ENST00000539286 699 ntTSL 2 BASIC23.49■■□□□ 1.35
CDX2Q99626 FAM219B-212ENST00000565772 1249 ntTSL 1 (best) BASIC23.49■■□□□ 1.35
CDX2Q99626 AL160396.2-202ENST00000636692 566 ntAPPRIS ALT2 TSL 5 BASIC23.49■■□□□ 1.35
CDX2Q99626 TMEM104-205ENST00000582773 1740 ntTSL 2 BASIC23.49■■□□□ 1.35
CDX2Q99626 BTBD6-204ENST00000463376 2195 ntAPPRIS ALT2 TSL 2 BASIC23.49■■□□□ 1.35
CDX2Q99626 PROSER2-205ENST00000622831 1646 ntAPPRIS ALT2 TSL 1 (best) BASIC23.48■■□□□ 1.35
CDX2Q99626 TANGO2-207ENST00000420290 1859 ntTSL 2 BASIC23.48■■□□□ 1.35
CDX2Q99626 MTHFD1L-201ENST00000367307 1049 ntTSL 1 (best) BASIC23.48■■□□□ 1.35
CDX2Q99626 TRA2B-203ENST00000382191 976 ntTSL 2 BASIC23.48■■□□□ 1.35
CDX2Q99626 PPP1R14BP2-201ENST00000426284 444 ntBASIC23.48■■□□□ 1.35
CDX2Q99626 CNN2P6-201ENST00000439038 900 ntBASIC23.48■■□□□ 1.35
CDX2Q99626 CHTF8-210ENST00000523421 766 ntTSL 3 BASIC23.48■■□□□ 1.35
CDX2Q99626 FIZ1-205ENST00000592585 489 ntTSL 5 BASIC23.48■■□□□ 1.35
CDX2Q99626 MAF-201ENST00000326043 2646 ntAPPRIS P3 TSL 1 (best) BASIC23.48■■□□□ 1.35
CDX2Q99626 CREB3L3-202ENST00000595923 1491 ntAPPRIS ALT2 TSL 1 (best) BASIC23.48■■□□□ 1.35
CDX2Q99626 ANKS3-203ENST00000450067 2272 ntTSL 5 BASIC23.48■■□□□ 1.35
CDX2Q99626 UCHL5-201ENST00000367448 1534 ntTSL 1 (best) BASIC23.48■■□□□ 1.35
CDX2Q99626 PGR-AS1-202ENST00000632820 1545 ntTSL 1 (best) BASIC23.48■■□□□ 1.35
CDX2Q99626 B4GAT1-201ENST00000311181 2072 ntAPPRIS P1 TSL 1 (best) BASIC23.47■■□□□ 1.35
CDX2Q99626 EFNA2-201ENST00000215368 949 ntAPPRIS P1 TSL 1 (best) BASIC23.47■■□□□ 1.35
CDX2Q99626 GNAS-AS1-201ENST00000424094 1156 ntTSL 1 (best) BASIC23.47■■□□□ 1.35
CDX2Q99626 LINC01637-201ENST00000444039 684 ntTSL 2 BASIC23.47■■□□□ 1.35
CDX2Q99626 UNC93B4-201ENST00000505679 747 ntBASIC23.47■■□□□ 1.35
CDX2Q99626 TUSC3-209ENST00000509380 1266 ntTSL 5 BASIC23.47■■□□□ 1.35
CDX2Q99626 SMIM1-203ENST00000561886 491 ntTSL 2 BASIC23.47■■□□□ 1.35
CDX2Q99626 LIMD2-206ENST00000578993 602 ntTSL 3 BASIC23.47■■□□□ 1.35
CDX2Q99626 BX649632.1-201ENST00000610187 819 ntTSL 3 BASIC23.47■■□□□ 1.35
CDX2Q99626 GPX1-204ENST00000620890 897 ntAPPRIS ALT2 TSL 5 BASIC23.47■■□□□ 1.35
CDX2Q99626 SH3GLB2-202ENST00000372559 1365 ntAPPRIS P1 TSL 1 (best) BASIC23.47■■□□□ 1.35
CDX2Q99626 MTAP-204ENST00000460874 1434 ntTSL 2 BASIC23.47■■□□□ 1.35
CDX2Q99626 AL161729.1-201ENST00000604104 1402 ntBASIC23.47■■□□□ 1.35
CDX2Q99626 HNRNPD-202ENST00000352301 1667 ntAPPRIS ALT1 TSL 1 (best) BASIC23.47■■□□□ 1.35
CDX2Q99626 MAD2L2-201ENST00000235310 1860 ntAPPRIS P1 TSL 2 BASIC23.46■■□□□ 1.35
CDX2Q99626 PHPT1-201ENST00000247665 890 ntAPPRIS P1 TSL 1 (best) BASIC23.46■■□□□ 1.35
CDX2Q99626 TSEN54-201ENST00000333213 1944 ntAPPRIS P1 TSL 1 (best) BASIC23.46■■□□□ 1.35
CDX2Q99626 PKIB-204ENST00000368448 1561 ntAPPRIS P1 TSL 5 BASIC23.46■■□□□ 1.35
CDX2Q99626 NOXA1-202ENST00000392815 1464 ntTSL 1 (best) BASIC23.46■■□□□ 1.35
CDX2Q99626 EMC6-202ENST00000397133 762 ntAPPRIS P1 TSL 2 BASIC23.46■■□□□ 1.35
CDX2Q99626 SFTPC-205ENST00000521315 1046 ntAPPRIS ALT1 TSL 1 (best) BASIC23.46■■□□□ 1.35
CDX2Q99626 C11orf80-210ENST00000527634 1666 ntAPPRIS ALT2 TSL 5 BASIC23.46■■□□□ 1.35
CDX2Q99626 DHRS4-207ENST00000559632 1003 ntTSL 1 (best) BASIC23.46■■□□□ 1.35
CDX2Q99626 SH3RF3-AS1-201ENST00000567491 1604 ntBASIC23.46■■□□□ 1.35
CDX2Q99626 DEDD2-205ENST00000596251 1183 ntAPPRIS P3 TSL 1 (best) BASIC23.46■■□□□ 1.35
CDX2Q99626 MIR6089-201ENST00000616698 64 ntBASIC23.46■■□□□ 1.35
CDX2Q99626 SGMS1-210ENST00000619438 1680 ntTSL 5 BASIC23.46■■□□□ 1.35
CDX2Q99626 FP325331.1-202ENST00000623531 1380 ntBASIC23.46■■□□□ 1.35
CDX2Q99626 MYCNOS-205ENST00000641950 531 ntBASIC23.46■■□□□ 1.35
CDX2Q99626 TRIM72-202ENST00000613872 1573 ntTSL 1 (best) BASIC23.45■■□□□ 1.34
CDX2Q99626 RWDD4-206ENST00000512740 1393 ntTSL 5 BASIC23.45■■□□□ 1.34
CDX2Q99626 MRPL39-201ENST00000307301 1199 ntAPPRIS ALT2 TSL 5 BASIC23.45■■□□□ 1.34
CDX2Q99626 TTC9B-201ENST00000311308 843 ntAPPRIS P1 TSL 1 (best) BASIC23.45■■□□□ 1.34
CDX2Q99626 MRPL39-202ENST00000352957 1110 ntAPPRIS P3 TSL 1 (best) BASIC23.45■■□□□ 1.34
CDX2Q99626 VKORC1-204ENST00000394971 664 ntTSL 5 BASIC23.45■■□□□ 1.34
CDX2Q99626 MIPEPP3-201ENST00000412105 444 ntBASIC23.45■■□□□ 1.34
CDX2Q99626 PEX26-203ENST00000428061 815 ntTSL 1 (best) BASIC23.45■■□□□ 1.34
CDX2Q99626 MLF2-206ENST00000539187 1110 ntAPPRIS P1 TSL 1 (best) BASIC23.45■■□□□ 1.34
CDX2Q99626 AC089999.2-201ENST00000552525 248 ntTSL 3 BASIC23.45■■□□□ 1.34
Retrieved 100 of 98,524 protein–RNA pairs in 21.8 ms