Protein–RNA interactions for Protein: Q96N23

CFAP54, Cilia- and flagella-associated protein 54, humanhuman

Predictions only

Length 3,096 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CFAP54Q96N23 IGFBP3-211ENST00000615754 792 ntTSL 5 BASIC21.9■■□□□ 1.1
CFAP54Q96N23 LHX3-201ENST00000371746 2403 ntAPPRIS P1 TSL 1 (best) BASIC21.9■■□□□ 1.1
CFAP54Q96N23 VRK2-202ENST00000412104 1916 ntTSL 1 (best) BASIC21.9■■□□□ 1.1
CFAP54Q96N23 TMEM54-202ENST00000373463 999 ntAPPRIS P1 TSL 1 (best) BASIC21.9■■□□□ 1.1
CFAP54Q96N23 LIMD2-206ENST00000578993 602 ntTSL 3 BASIC21.9■■□□□ 1.1
CFAP54Q96N23 KAT8-206ENST00000543774 1846 ntAPPRIS P1 TSL 5 BASIC21.89■■□□□ 1.1
CFAP54Q96N23 SLC6A10P-202ENST00000431994 2058 ntBASIC21.89■■□□□ 1.1
CFAP54Q96N23 BTBD6-201ENST00000327471 1948 ntAPPRIS ALT2 TSL 2 BASIC21.89■■□□□ 1.09
CFAP54Q96N23 BNIP3L-204ENST00000520409 739 ntTSL 2 BASIC21.89■■□□□ 1.09
CFAP54Q96N23 SELENOS-203ENST00000526049 1188 ntAPPRIS P1 TSL 1 (best) BASIC21.89■■□□□ 1.09
CFAP54Q96N23 C1QL2-201ENST00000272520 2043 ntAPPRIS P1 TSL 1 (best) BASIC21.89■■□□□ 1.09
CFAP54Q96N23 AL121749.1-201ENST00000635993 1768 ntTSL 5 BASIC21.89■■□□□ 1.09
CFAP54Q96N23 AC114730.1-201ENST00000400768 472 ntTSL 4 BASIC21.88■■□□□ 1.09
CFAP54Q96N23 WIPF1-207ENST00000410117 777 ntTSL 3 BASIC21.88■■□□□ 1.09
CFAP54Q96N23 AL133410.2-201ENST00000425499 696 ntTSL 5 BASIC21.88■■□□□ 1.09
CFAP54Q96N23 LRRK1-208ENST00000532029 1241 ntTSL 1 (best) BASIC21.88■■□□□ 1.09
CFAP54Q96N23 TNFRSF1B-204ENST00000536782 557 ntTSL 1 (best) BASIC21.88■■□□□ 1.09
CFAP54Q96N23 MAD2L2-201ENST00000235310 1860 ntAPPRIS P1 TSL 2 BASIC21.88■■□□□ 1.09
CFAP54Q96N23 RAP1B-202ENST00000341355 714 ntAPPRIS P1 TSL 3 BASIC21.88■■□□□ 1.09
CFAP54Q96N23 CDH24-206ENST00000610348 2037 ntTSL 1 (best) BASIC21.88■■□□□ 1.09
CFAP54Q96N23 SRP68-202ENST00000539137 2386 ntTSL 2 BASIC21.88■■□□□ 1.09
CFAP54Q96N23 SMIM19-203ENST00000417410 1466 ntAPPRIS P1 TSL 2 BASIC21.88■■□□□ 1.09
CFAP54Q96N23 OAZ2-201ENST00000326005 1934 ntAPPRIS P1 TSL 5 BASIC21.88■■□□□ 1.09
CFAP54Q96N23 PEA15-201ENST00000360472 2471 ntAPPRIS P1 TSL 1 (best) BASIC21.88■■□□□ 1.09
CFAP54Q96N23 C12orf42-208ENST00000548883 1336 ntAPPRIS P2 TSL 1 (best) BASIC21.88■■□□□ 1.09
CFAP54Q96N23 TMUB1-205ENST00000482202 899 ntAPPRIS P1 TSL 3 BASIC21.88■■□□□ 1.09
CFAP54Q96N23 AC231657.2-201ENST00000624556 255 ntBASIC21.88■■□□□ 1.09
CFAP54Q96N23 PLPP1-202ENST00000307259 1597 ntAPPRIS ALT1 TSL 1 (best) BASIC21.87■■□□□ 1.09
CFAP54Q96N23 EXOC3-209ENST00000512944 2825 ntAPPRIS P1 TSL 1 (best) BASIC21.87■■□□□ 1.09
CFAP54Q96N23 LINC01743-201ENST00000366308 964 ntTSL 1 (best) BASIC21.87■■□□□ 1.09
CFAP54Q96N23 PPP1R14BP2-201ENST00000426284 444 ntBASIC21.87■■□□□ 1.09
CFAP54Q96N23 ZNF436-AS1-202ENST00000437367 606 ntTSL 2 BASIC21.87■■□□□ 1.09
CFAP54Q96N23 AKAP17A-202ENST00000381261 2187 ntAPPRIS ALT2 TSL 1 (best) BASIC21.87■■□□□ 1.09
CFAP54Q96N23 TMEM9-201ENST00000367330 1959 ntAPPRIS P3 TSL 1 (best) BASIC21.87■■□□□ 1.09
CFAP54Q96N23 TSEN34-204ENST00000429671 1912 ntTSL 2 BASIC21.87■■□□□ 1.09
CFAP54Q96N23 SMIM8-209ENST00000608868 815 ntAPPRIS P1 TSL 5 BASIC21.87■■□□□ 1.09
CFAP54Q96N23 CD24-208ENST00000622315 825 ntAPPRIS ALT2 TSL 2 BASIC21.87■■□□□ 1.09
CFAP54Q96N23 EPCAM-202ENST00000405271 1530 ntTSL 5 BASIC21.87■■□□□ 1.09
CFAP54Q96N23 FAM118A-205ENST00000441876 1776 ntAPPRIS P1 TSL 1 (best) BASIC21.87■■□□□ 1.09
CFAP54Q96N23 OTUD5-201ENST00000156084 2740 ntAPPRIS P3 TSL 1 (best) BASIC21.86■■□□□ 1.09
CFAP54Q96N23 MRPL37-202ENST00000360840 1483 ntAPPRIS P1 TSL 1 (best) BASIC21.86■■□□□ 1.09
CFAP54Q96N23 SH3GLB2-202ENST00000372559 1365 ntAPPRIS P1 TSL 1 (best) BASIC21.86■■□□□ 1.09
CFAP54Q96N23 PXK-201ENST00000302779 1974 ntTSL 1 (best) BASIC21.86■■□□□ 1.09
CFAP54Q96N23 TMEM176B-203ENST00000434545 1303 ntAPPRIS P1 TSL 1 (best) BASIC21.86■■□□□ 1.09
CFAP54Q96N23 EPCAM-201ENST00000263735 1724 ntAPPRIS P1 TSL 1 (best) BASIC21.86■■□□□ 1.09
CFAP54Q96N23 RCC1L-201ENST00000610322 2300 ntAPPRIS P1 TSL 1 (best) BASIC21.86■■□□□ 1.09
CFAP54Q96N23 NXT1-201ENST00000254998 1123 ntAPPRIS P1 TSL 1 (best) BASIC21.86■■□□□ 1.09
CFAP54Q96N23 RUNDC3A-201ENST00000225441 1821 ntTSL 1 (best) BASIC21.86■■□□□ 1.09
CFAP54Q96N23 ZDHHC16-203ENST00000353979 1647 ntTSL 1 (best) BASIC21.86■■□□□ 1.09
CFAP54Q96N23 BTBD6-203ENST00000392554 2176 ntAPPRIS P2 TSL 1 (best) BASIC21.86■■□□□ 1.09
CFAP54Q96N23 CEBPA-AS1-201ENST00000592982 2198 ntBASIC21.86■■□□□ 1.09
CFAP54Q96N23 FPGS-221ENST00000630236 2160 ntTSL 5 BASIC21.86■■□□□ 1.09
CFAP54Q96N23 KCNQ3-202ENST00000519445 2801 ntAPPRIS ALT2 TSL 5 BASIC21.86■■□□□ 1.09
CFAP54Q96N23 AL109797.1-201ENST00000452501 835 ntTSL 2 BASIC21.86■■□□□ 1.09
CFAP54Q96N23 HMX1-202ENST00000506970 651 ntTSL 1 (best) BASIC21.86■■□□□ 1.09
CFAP54Q96N23 IRX5-204ENST00000560154 879 ntTSL 5 BASIC21.86■■□□□ 1.09
CFAP54Q96N23 IRX5-205ENST00000620085 881 ntTSL 1 (best) BASIC21.86■■□□□ 1.09
CFAP54Q96N23 CCND3-223ENST00000616010 2047 ntTSL 5 BASIC21.85■■□□□ 1.09
CFAP54Q96N23 FAM163B-202ENST00000496132 811 ntAPPRIS P1 TSL 3 BASIC21.85■■□□□ 1.09
CFAP54Q96N23 RAPSN-205ENST00000529341 1408 ntTSL 1 (best) BASIC21.85■■□□□ 1.09
CFAP54Q96N23 MAP1LC3A-202ENST00000374837 961 ntTSL 3 BASIC21.85■■□□□ 1.09
CFAP54Q96N23 RAMP1-202ENST00000403885 650 ntTSL 3 BASIC21.85■■□□□ 1.09
CFAP54Q96N23 RAMP1-203ENST00000404910 857 ntTSL 2 BASIC21.85■■□□□ 1.09
CFAP54Q96N23 AC092675.2-201ENST00000413274 541 ntTSL 4 BASIC21.85■■□□□ 1.09
CFAP54Q96N23 LINC01023-201ENST00000606054 436 ntBASIC21.85■■□□□ 1.09
CFAP54Q96N23 TMEM98-202ENST00000394642 1683 ntAPPRIS P1 TSL 2 BASIC21.85■■□□□ 1.09
CFAP54Q96N23 TMEM202-AS1-202ENST00000565181 2325 ntBASIC21.84■■□□□ 1.09
CFAP54Q96N23 PTH1R-206ENST00000430002 1947 ntAPPRIS P1 TSL 1 (best) BASIC21.84■■□□□ 1.09
CFAP54Q96N23 LENG1-201ENST00000222224 1542 ntAPPRIS P1 TSL 1 (best) BASIC21.84■■□□□ 1.09
CFAP54Q96N23 OSR2-210ENST00000523368 1519 ntTSL 1 (best) BASIC21.84■■□□□ 1.09
CFAP54Q96N23 AC105233.4-201ENST00000642045 216 ntBASIC21.84■■□□□ 1.09
CFAP54Q96N23 TMEM104-205ENST00000582773 1740 ntTSL 2 BASIC21.84■■□□□ 1.09
CFAP54Q96N23 POLR2H-208ENST00000456318 1802 ntAPPRIS P1 TSL 5 BASIC21.84■■□□□ 1.09
CFAP54Q96N23 EVX1-201ENST00000222761 1500 ntTSL 1 (best) BASIC21.84■■□□□ 1.09
CFAP54Q96N23 TRAPPC2L-213ENST00000567895 854 ntTSL 3 BASIC21.84■■□□□ 1.09
CFAP54Q96N23 TNNI3-207ENST00000588882 669 ntTSL 2 BASIC21.84■■□□□ 1.09
CFAP54Q96N23 COX5B-201ENST00000258424 712 ntAPPRIS P1 TSL 1 (best) BASIC21.83■■□□□ 1.09
CFAP54Q96N23 AC128676.1-201ENST00000454392 318 ntBASIC21.83■■□□□ 1.09
CFAP54Q96N23 GALNS-211ENST00000568311 703 ntTSL 1 (best) BASIC21.83■■□□□ 1.09
CFAP54Q96N23 B4GAT1-201ENST00000311181 2072 ntAPPRIS P1 TSL 1 (best) BASIC21.83■■□□□ 1.09
CFAP54Q96N23 CADM4-201ENST00000222374 2178 ntAPPRIS P1 TSL 1 (best) BASIC21.83■■□□□ 1.09
CFAP54Q96N23 SGMS1-210ENST00000619438 1680 ntTSL 5 BASIC21.83■■□□□ 1.09
CFAP54Q96N23 TNFRSF18-201ENST00000328596 851 ntAPPRIS P4 TSL 1 (best) BASIC21.83■■□□□ 1.09
CFAP54Q96N23 LINC01117-201ENST00000443670 699 ntTSL 5 BASIC21.83■■□□□ 1.09
CFAP54Q96N23 USF2-201ENST00000222305 1634 ntAPPRIS P1 TSL 1 (best) BASIC21.83■■□□□ 1.09
CFAP54Q96N23 USF2-207ENST00000595068 1612 ntTSL 5 BASIC21.83■■□□□ 1.09
CFAP54Q96N23 DRAM2-211ENST00000539140 1883 ntAPPRIS P1 TSL 1 (best) BASIC21.83■■□□□ 1.08
CFAP54Q96N23 EIF4E3-203ENST00000421769 777 ntTSL 1 (best) BASIC21.83■■□□□ 1.08
CFAP54Q96N23 CNN2P6-201ENST00000439038 900 ntBASIC21.83■■□□□ 1.08
CFAP54Q96N23 AC006058.3-201ENST00000606217 1069 ntBASIC21.83■■□□□ 1.08
CFAP54Q96N23 DCUN1D2-208ENST00000478244 2045 ntAPPRIS P1 TSL 1 (best) BASIC21.83■■□□□ 1.08
CFAP54Q96N23 AC004691.2-201ENST00000509504 1531 ntAPPRIS P1 TSL 5 BASIC21.82■■□□□ 1.08
CFAP54Q96N23 EP300-AS1-201ENST00000420537 457 ntTSL 3 BASIC21.82■■□□□ 1.08
CFAP54Q96N23 MNX1-AS1-201ENST00000480284 1041 ntTSL 1 (best) BASIC21.82■■□□□ 1.08
CFAP54Q96N23 LINC02136-201ENST00000567469 530 ntTSL 4 BASIC21.82■■□□□ 1.08
CFAP54Q96N23 AC010501.1-201ENST00000606270 1962 ntBASIC21.82■■□□□ 1.08
CFAP54Q96N23 GCLC-209ENST00000514004 2356 ntTSL 1 (best) BASIC21.82■■□□□ 1.08
CFAP54Q96N23 MEA1-201ENST00000244711 1089 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
CFAP54Q96N23 PDCD6-206ENST00000507528 1088 ntAPPRIS ALT1 TSL 1 (best) BASIC21.82■■□□□ 1.08
CFAP54Q96N23 PTCRA-204ENST00000616441 1125 ntAPPRIS ALT2 TSL 2 BASIC21.82■■□□□ 1.08
Retrieved 100 of 98,524 protein–RNA pairs in 20.2 ms