Protein–RNA interactions for Protein: Q96K76

USP47, Ubiquitin carboxyl-terminal hydrolase 47, humanhuman

Predictions only

Length 1,375 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP47Q96K76 NPAS3-206ENST00000548645 2926 ntAPPRIS ALT2 TSL 1 (best) BASIC31.07■■■□□ 2.57
USP47Q96K76 AC091305.1-201ENST00000479476 895 ntBASIC31.07■■■□□ 2.56
USP47Q96K76 AC142381.2-201ENST00000566120 298 ntBASIC31.07■■■□□ 2.56
USP47Q96K76 AC233992.3-201ENST00000607491 485 ntBASIC31.07■■■□□ 2.56
USP47Q96K76 SYNGR3-206ENST00000618464 1213 ntTSL 1 (best) BASIC31.07■■■□□ 2.56
USP47Q96K76 RANBP10-206ENST00000602677 2374 ntTSL 5 BASIC31.07■■■□□ 2.56
USP47Q96K76 HTATIP2-204ENST00000451739 1748 ntAPPRIS P1 TSL 1 (best) BASIC31.07■■■□□ 2.56
USP47Q96K76 TSKS-202ENST00000358830 1367 ntAPPRIS ALT2 TSL 1 (best) BASIC31.07■■■□□ 2.56
USP47Q96K76 SH3YL1-201ENST00000356150 1763 ntAPPRIS P1 TSL 1 (best) BASIC31.07■■■□□ 2.56
USP47Q96K76 EPCAM-202ENST00000405271 1530 ntTSL 5 BASIC31.06■■■□□ 2.56
USP47Q96K76 HSD17B14-201ENST00000263278 1238 ntAPPRIS P1 TSL 1 (best) BASIC31.06■■■□□ 2.56
USP47Q96K76 STX10-202ENST00000343587 1128 ntTSL 1 (best) BASIC31.06■■■□□ 2.56
USP47Q96K76 AC008764.7-201ENST00000593779 1081 ntBASIC31.06■■■□□ 2.56
USP47Q96K76 FAM110A-206ENST00000541082 1614 ntAPPRIS P1 TSL 3 BASIC31.06■■■□□ 2.56
USP47Q96K76 CACTIN-AS1-201ENST00000592274 1913 ntTSL 2 BASIC31.06■■■□□ 2.56
USP47Q96K76 UCHL5-201ENST00000367448 1534 ntTSL 1 (best) BASIC31.06■■■□□ 2.56
USP47Q96K76 GCA-201ENST00000233612 1694 ntTSL 2 BASIC31.06■■■□□ 2.56
USP47Q96K76 CDKN2D-201ENST00000335766 1086 ntAPPRIS P1 TSL 1 (best) BASIC31.05■■■□□ 2.56
USP47Q96K76 DENND2D-202ENST00000369752 1894 ntAPPRIS ALT2 TSL 2 BASIC31.05■■■□□ 2.56
USP47Q96K76 KLC1-205ENST00000380038 2322 ntTSL 2 BASIC31.05■■■□□ 2.56
USP47Q96K76 FAM102B-202ENST00000405454 1585 ntAPPRIS ALT2 TSL 5 BASIC31.05■■■□□ 2.56
USP47Q96K76 HSD11B1L-217ENST00000581521 1884 ntAPPRIS P3 TSL 5 BASIC31.05■■■□□ 2.56
USP47Q96K76 ARRDC2-202ENST00000379656 2528 ntTSL 2 BASIC31.05■■■□□ 2.56
USP47Q96K76 ZDHHC16-203ENST00000353979 1647 ntTSL 1 (best) BASIC31.05■■■□□ 2.56
USP47Q96K76 C12orf75-208ENST00000612117 1329 ntTSL 1 (best) BASIC31.05■■■□□ 2.56
USP47Q96K76 CCM2L-201ENST00000262659 2523 ntAPPRIS P1 TSL 1 (best) BASIC31.05■■■□□ 2.56
USP47Q96K76 FAM185A-201ENST00000409231 1446 ntAPPRIS ALT2 TSL 2 BASIC31.05■■■□□ 2.56
USP47Q96K76 UBE2J2-203ENST00000360466 1047 ntAPPRIS P1 TSL 2 BASIC31.05■■■□□ 2.56
USP47Q96K76 ZDHHC16-205ENST00000370846 1280 ntTSL 3 BASIC31.05■■■□□ 2.56
USP47Q96K76 WRNIP1-205ENST00000618555 2651 ntAPPRIS P1 TSL 1 (best) BASIC31.04■■■□□ 2.56
USP47Q96K76 NPEPL1-201ENST00000356091 2378 ntAPPRIS P1 TSL 1 (best) BASIC31.04■■■□□ 2.56
USP47Q96K76 TARSL2-207ENST00000615656 2356 ntAPPRIS ALT2 TSL 5 BASIC31.04■■■□□ 2.56
USP47Q96K76 ARRDC1-AS1-203ENST00000623970 2210 ntTSL 5 BASIC31.04■■■□□ 2.56
USP47Q96K76 C18orf65-201ENST00000622985 2076 ntTSL 2 BASIC31.04■■■□□ 2.56
USP47Q96K76 OLIG1-201ENST00000382348 2277 ntAPPRIS P1 BASIC31.04■■■□□ 2.56
USP47Q96K76 SDSL-201ENST00000345635 1397 ntAPPRIS P1 TSL 1 (best) BASIC31.04■■■□□ 2.56
USP47Q96K76 CNTD2-202ENST00000430325 1817 ntAPPRIS P2 TSL 2 BASIC31.04■■■□□ 2.56
USP47Q96K76 KCNIP1-201ENST00000328939 2014 ntAPPRIS P1 TSL 1 (best) BASIC31.04■■■□□ 2.56
USP47Q96K76 AL031602.1-201ENST00000633169 911 ntBASIC31.04■■■□□ 2.56
USP47Q96K76 IMPA2-201ENST00000269159 1534 ntAPPRIS P1 TSL 1 (best) BASIC31.03■■■□□ 2.56
USP47Q96K76 RNF19B-203ENST00000373456 2560 ntAPPRIS P3 TSL 1 (best) BASIC31.03■■■□□ 2.56
USP47Q96K76 GRK4-206ENST00000504933 1971 ntTSL 1 (best) BASIC31.03■■■□□ 2.56
USP47Q96K76 RASA4CP-201ENST00000424092 1398 ntBASIC31.03■■■□□ 2.56
USP47Q96K76 KLC1-227ENST00000634686 2229 ntTSL 5 BASIC31.03■■■□□ 2.56
USP47Q96K76 BTBD7-205ENST00000554565 2697 ntTSL 1 (best) BASIC31.03■■■□□ 2.56
USP47Q96K76 CCDC7-201ENST00000277657 1899 ntAPPRIS P2 TSL 1 (best) BASIC31.03■■■□□ 2.56
USP47Q96K76 CRTAC1-202ENST00000370591 2348 ntAPPRIS P2 TSL 5 BASIC31.03■■■□□ 2.56
USP47Q96K76 LYPLA1-201ENST00000316963 2585 ntAPPRIS P1 TSL 1 (best) BASIC31.03■■■□□ 2.56
USP47Q96K76 STX4-201ENST00000313843 1481 ntAPPRIS P1 TSL 1 (best) BASIC31.03■■■□□ 2.56
USP47Q96K76 AL161908.1-203ENST00000425370 506 ntTSL 2 BASIC31.03■■■□□ 2.56
USP47Q96K76 ACYP1-205ENST00000555463 789 ntTSL 2 BASIC31.03■■■□□ 2.56
USP47Q96K76 CA15P2-201ENST00000611168 834 ntBASIC31.03■■■□□ 2.56
USP47Q96K76 ZNHIT2-201ENST00000310597 1306 ntAPPRIS P1 BASIC31.02■■■□□ 2.56
USP47Q96K76 RHBDL3-204ENST00000538145 1338 ntAPPRIS ALT2 TSL 1 (best) BASIC31.02■■■□□ 2.56
USP47Q96K76 RNF4-207ENST00000506706 2098 ntAPPRIS P1 TSL 1 (best) BASIC31.02■■■□□ 2.56
USP47Q96K76 SLC39A14-202ENST00000289952 2137 ntAPPRIS ALT2 TSL 2 BASIC31.02■■■□□ 2.56
USP47Q96K76 KBTBD13-201ENST00000432196 1377 ntAPPRIS P1 BASIC31.02■■■□□ 2.56
USP47Q96K76 ACTR1B-201ENST00000289228 2243 ntAPPRIS P1 TSL 1 (best) BASIC31.02■■■□□ 2.56
USP47Q96K76 TRIR-201ENST00000242784 970 ntAPPRIS P1 TSL 1 (best) BASIC31.02■■■□□ 2.56
USP47Q96K76 POLR3GL-201ENST00000369313 818 ntTSL 2 BASIC31.02■■■□□ 2.56
USP47Q96K76 SRM-201ENST00000376957 1266 ntAPPRIS P1 TSL 1 (best) BASIC31.02■■■□□ 2.56
USP47Q96K76 AC104564.5-201ENST00000584986 278 ntTSL 3 BASIC31.02■■■□□ 2.56
USP47Q96K76 AC233992.2-201ENST00000531225 1596 ntAPPRIS P1 TSL 2 BASIC31.02■■■□□ 2.56
USP47Q96K76 THRA-201ENST00000264637 2538 ntTSL 1 (best) BASIC31.02■■■□□ 2.56
USP47Q96K76 RGS6-209ENST00000553525 2005 ntAPPRIS ALT1 TSL 2 BASIC31.01■■■□□ 2.56
USP47Q96K76 SIRT3-204ENST00000525319 1475 ntAPPRIS ALT2 TSL 2 BASIC31.01■■■□□ 2.55
USP47Q96K76 TMEM44-211ENST00000473092 1508 ntTSL 1 (best) BASIC31.01■■■□□ 2.55
USP47Q96K76 AARD-201ENST00000378279 2299 ntAPPRIS P1 TSL 1 (best) BASIC31.01■■■□□ 2.55
USP47Q96K76 AURKAIP1-204ENST00000378853 875 ntAPPRIS P1 TSL 2 BASIC31.01■■■□□ 2.55
USP47Q96K76 HSPE1-203ENST00000409729 478 ntTSL 2 BASIC31.01■■■□□ 2.55
USP47Q96K76 TGIF1-206ENST00000405385 1689 ntTSL 2 BASIC31.01■■■□□ 2.55
USP47Q96K76 COMT-203ENST00000403184 2217 ntTSL 2 BASIC31■■■□□ 2.55
USP47Q96K76 PGF-206ENST00000555567 1927 ntAPPRIS P3 TSL 1 (best) BASIC31■■■□□ 2.55
USP47Q96K76 AP001107.5-202ENST00000533759 948 ntTSL 5 BASIC31■■■□□ 2.55
USP47Q96K76 GJD3-201ENST00000578689 885 ntAPPRIS P1 BASIC31■■■□□ 2.55
USP47Q96K76 ZNF846-212ENST00000592859 1206 ntTSL 2 BASIC31■■■□□ 2.55
USP47Q96K76 IGSF21-201ENST00000251296 1943 ntAPPRIS P1 TSL 1 (best) BASIC31■■■□□ 2.55
USP47Q96K76 HAS1-201ENST00000222115 2087 ntAPPRIS P3 TSL 1 (best) BASIC31■■■□□ 2.55
USP47Q96K76 MIS18A-201ENST00000290130 1575 ntAPPRIS P1 TSL 1 (best) BASIC30.99■■■□□ 2.55
USP47Q96K76 RAB6A-204ENST00000536566 1267 ntTSL 5 BASIC30.99■■■□□ 2.55
USP47Q96K76 MPST-208ENST00000628507 698 ntTSL 5 BASIC30.99■■■□□ 2.55
USP47Q96K76 LEF1-AS1-207ENST00000512637 1675 ntTSL 1 (best) BASIC30.99■■■□□ 2.55
USP47Q96K76 SLC35F4-206ENST00000556826 1908 ntAPPRIS P1 TSL 5 BASIC30.98■■■□□ 2.55
USP47Q96K76 HOXD1-201ENST00000331462 1975 ntAPPRIS P1 TSL 1 (best) BASIC30.98■■■□□ 2.55
USP47Q96K76 ZNF668-205ENST00000426488 2282 ntTSL 5 BASIC30.98■■■□□ 2.55
USP47Q96K76 PLEKHJ1-206ENST00000587962 1311 ntTSL 2 BASIC30.98■■■□□ 2.55
USP47Q96K76 HMGA2-205ENST00000425208 1444 ntTSL 1 (best) BASIC30.98■■■□□ 2.55
USP47Q96K76 CACNB1-201ENST00000344140 1889 ntTSL 1 (best) BASIC30.98■■■□□ 2.55
USP47Q96K76 SLAIN1-213ENST00000466548 2637 ntAPPRIS ALT2 TSL 5 BASIC30.97■■■□□ 2.55
USP47Q96K76 PRELID2-201ENST00000334744 2140 ntTSL 2 BASIC30.97■■■□□ 2.55
USP47Q96K76 ASF1B-201ENST00000263382 2059 ntAPPRIS P1 TSL 1 (best) BASIC30.97■■■□□ 2.55
USP47Q96K76 TANGO2-210ENST00000432883 2084 ntTSL 2 BASIC30.97■■■□□ 2.55
USP47Q96K76 IGFBP1-201ENST00000275525 1653 ntAPPRIS P2 TSL 1 (best) BASIC30.97■■■□□ 2.55
USP47Q96K76 MRPL46-201ENST00000312475 1019 ntAPPRIS P1 TSL 1 (best) BASIC30.97■■■□□ 2.55
USP47Q96K76 CLPSL2-201ENST00000360454 488 ntAPPRIS ALT2 TSL 1 (best) BASIC30.97■■■□□ 2.55
USP47Q96K76 CTAG2-202ENST00000369585 748 ntAPPRIS P1 TSL 1 (best) BASIC30.97■■■□□ 2.55
USP47Q96K76 PLPP5-201ENST00000419686 794 ntTSL 2 BASIC30.97■■■□□ 2.55
USP47Q96K76 AC084116.4-201ENST00000524320 484 ntTSL 2 BASIC30.97■■■□□ 2.55
USP47Q96K76 AL137002.2-201ENST00000639766 2238 ntTSL 5 BASIC30.97■■■□□ 2.55
USP47Q96K76 ASPSCR1-201ENST00000306729 2123 ntAPPRIS ALT2 TSL 2 BASIC30.97■■■□□ 2.55
Retrieved 100 of 98,524 protein–RNA pairs in 17.6 ms