Protein–RNA interactions for Protein: Q96EY7

PTCD3, Pentatricopeptide repeat domain-containing protein 3, mitochondrial, humanhuman

Known RBP Predictions only

Length 689 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTCD3Q96EY7 SLC25A1-201ENST00000215882 1648 ntAPPRIS P1 TSL 1 (best) BASIC21.88■■□□□ 1.09
PTCD3Q96EY7 PUF60-203ENST00000453551 1842 ntTSL 1 (best) BASIC21.87■■□□□ 1.09
PTCD3Q96EY7 FGF22-201ENST00000215530 1311 ntAPPRIS P1 TSL 1 (best) BASIC21.87■■□□□ 1.09
PTCD3Q96EY7 PDLIM2-216ENST00000464275 1995 ntTSL 2 BASIC21.87■■□□□ 1.09
PTCD3Q96EY7 TMEFF1-201ENST00000374879 2611 ntAPPRIS P1 TSL 1 (best) BASIC21.87■■□□□ 1.09
PTCD3Q96EY7 NIPA2-202ENST00000359727 1531 ntTSL 1 (best) BASIC21.87■■□□□ 1.09
PTCD3Q96EY7 NEURL4-201ENST00000315614 5182 ntAPPRIS ALT2 TSL 1 (best) BASIC21.87■■□□□ 1.09
PTCD3Q96EY7 APOE-201ENST00000252486 1208 ntAPPRIS P1 TSL 1 (best) BASIC21.87■■□□□ 1.09
PTCD3Q96EY7 PHLPP1-201ENST00000262719 6390 ntAPPRIS P1 TSL 1 (best) BASIC21.87■■□□□ 1.09
PTCD3Q96EY7 PRELID2-201ENST00000334744 2140 ntTSL 2 BASIC21.87■■□□□ 1.09
PTCD3Q96EY7 GUCD1-202ENST00000402766 865 ntTSL 2 BASIC21.87■■□□□ 1.09
PTCD3Q96EY7 CLTA-204ENST00000433436 1235 ntAPPRIS ALT1 TSL 1 (best) BASIC21.87■■□□□ 1.09
PTCD3Q96EY7 HOXC-AS1-201ENST00000505700 548 ntTSL 2 BASIC21.87■■□□□ 1.09
PTCD3Q96EY7 CLTA-209ENST00000538225 1181 ntTSL 2 BASIC21.87■■□□□ 1.09
PTCD3Q96EY7 CLTA-210ENST00000540080 989 ntTSL 2 BASIC21.87■■□□□ 1.09
PTCD3Q96EY7 RPP38-201ENST00000378197 1457 ntAPPRIS P1 TSL 1 (best) BASIC21.87■■□□□ 1.09
PTCD3Q96EY7 HNRNPD-202ENST00000352301 1667 ntAPPRIS ALT1 TSL 1 (best) BASIC21.87■■□□□ 1.09
PTCD3Q96EY7 WAS-201ENST00000376701 1849 ntAPPRIS P1 TSL 1 (best) BASIC21.87■■□□□ 1.09
PTCD3Q96EY7 AC092053.2-201ENST00000640557 1818 ntBASIC21.87■■□□□ 1.09
PTCD3Q96EY7 FBXW4P1-201ENST00000426721 2239 ntBASIC21.87■■□□□ 1.09
PTCD3Q96EY7 DOCK5-208ENST00000481100 2166 ntTSL 1 (best) BASIC21.87■■□□□ 1.09
PTCD3Q96EY7 PLPP5-209ENST00000529359 2185 ntTSL 1 (best) BASIC21.87■■□□□ 1.09
PTCD3Q96EY7 RAD9A-201ENST00000307980 2119 ntAPPRIS P1 TSL 1 (best) BASIC21.86■■□□□ 1.09
PTCD3Q96EY7 MAPK9-202ENST00000347470 1509 ntTSL 5 BASIC21.86■■□□□ 1.09
PTCD3Q96EY7 PFKP-201ENST00000381072 1698 ntTSL 1 (best) BASIC21.86■■□□□ 1.09
PTCD3Q96EY7 ARL13B-205ENST00000471138 2206 ntAPPRIS P1 TSL 1 (best) BASIC21.86■■□□□ 1.09
PTCD3Q96EY7 FAM20C-201ENST00000313766 2751 ntAPPRIS P1 TSL 1 (best) BASIC21.86■■□□□ 1.09
PTCD3Q96EY7 CREB3L3-205ENST00000602257 1475 ntAPPRIS ALT2 TSL 1 (best) BASIC21.86■■□□□ 1.09
PTCD3Q96EY7 KCNIP1-201ENST00000328939 2014 ntAPPRIS P1 TSL 1 (best) BASIC21.86■■□□□ 1.09
PTCD3Q96EY7 RHCE-204ENST00000349320 1810 ntAPPRIS ALT2 TSL 2 BASIC21.86■■□□□ 1.09
PTCD3Q96EY7 NPW-201ENST00000329610 498 ntAPPRIS P2 TSL 1 (best) BASIC21.86■■□□□ 1.09
PTCD3Q96EY7 SUSD3-202ENST00000375472 1195 ntAPPRIS P3 TSL 1 (best) BASIC21.86■■□□□ 1.09
PTCD3Q96EY7 IGFBP7-203ENST00000514062 1251 ntAPPRIS ALT2 TSL 2 BASIC21.86■■□□□ 1.09
PTCD3Q96EY7 MIR6722-201ENST00000617286 78 ntBASIC21.86■■□□□ 1.09
PTCD3Q96EY7 TMEM240-203ENST00000624426 796 ntTSL 3 BASIC21.86■■□□□ 1.09
PTCD3Q96EY7 ZNF669-201ENST00000343381 1951 ntAPPRIS P3 TSL 1 (best) BASIC21.86■■□□□ 1.09
PTCD3Q96EY7 FOSL1-202ENST00000448083 1427 ntTSL 2 BASIC21.86■■□□□ 1.09
PTCD3Q96EY7 TMEM179-204ENST00000556573 1430 ntAPPRIS P1 TSL 3 BASIC21.86■■□□□ 1.09
PTCD3Q96EY7 MFSD7-202ENST00000347950 1599 ntTSL 2 BASIC21.86■■□□□ 1.09
PTCD3Q96EY7 FAM19A5-202ENST00000358295 2638 ntAPPRIS P1 TSL 2 BASIC21.86■■□□□ 1.09
PTCD3Q96EY7 PDZRN4-202ENST00000402685 3347 ntAPPRIS P1 TSL 2 BASIC21.86■■□□□ 1.09
PTCD3Q96EY7 REST-206ENST00000612429 1376 ntTSL 5 BASIC21.86■■□□□ 1.09
PTCD3Q96EY7 REST-207ENST00000616975 1370 ntTSL 5 BASIC21.86■■□□□ 1.09
PTCD3Q96EY7 REST-212ENST00000640343 1352 ntTSL 1 (best) BASIC21.86■■□□□ 1.09
PTCD3Q96EY7 ZNF331-202ENST00000411977 2248 ntAPPRIS P1 TSL 1 (best) BASIC21.86■■□□□ 1.09
PTCD3Q96EY7 EFS-202ENST00000351354 2704 ntTSL 1 (best) BASIC21.86■■□□□ 1.09
PTCD3Q96EY7 MAG-202ENST00000392213 2390 ntAPPRIS P4 TSL 1 (best) BASIC21.85■■□□□ 1.09
PTCD3Q96EY7 CCM2-206ENST00000474617 1532 ntTSL 5 BASIC21.85■■□□□ 1.09
PTCD3Q96EY7 TMEM159-201ENST00000233047 2014 ntAPPRIS P1 TSL 1 (best) BASIC21.85■■□□□ 1.09
PTCD3Q96EY7 RBM42-206ENST00000592202 1469 ntTSL 5 BASIC21.85■■□□□ 1.09
PTCD3Q96EY7 GJD4-201ENST00000321660 1580 ntAPPRIS P1 TSL 1 (best) BASIC21.85■■□□□ 1.09
PTCD3Q96EY7 SPEF1-201ENST00000379756 1580 ntAPPRIS P1 TSL 1 (best) BASIC21.85■■□□□ 1.09
PTCD3Q96EY7 SLC25A11-201ENST00000225665 1897 ntAPPRIS P1 TSL 1 (best) BASIC21.85■■□□□ 1.09
PTCD3Q96EY7 GNB1-209ENST00000610897 3145 ntAPPRIS P1 TSL 5 BASIC21.84■■□□□ 1.09
PTCD3Q96EY7 CACNG2-201ENST00000300105 2384 ntAPPRIS P1 TSL 1 (best) BASIC21.84■■□□□ 1.09
PTCD3Q96EY7 ENTPD4-201ENST00000356206 2097 ntTSL 1 (best) BASIC21.84■■□□□ 1.09
PTCD3Q96EY7 CNTFR-202ENST00000378980 2052 ntAPPRIS P1 TSL 1 (best) BASIC21.84■■□□□ 1.09
PTCD3Q96EY7 ENTPD4-203ENST00000417069 2063 ntAPPRIS P1 TSL 1 (best) BASIC21.84■■□□□ 1.09
PTCD3Q96EY7 TEAD2-201ENST00000311227 2164 ntAPPRIS P3 TSL 1 (best) BASIC21.84■■□□□ 1.09
PTCD3Q96EY7 TBC1D22A-202ENST00000355704 1886 ntTSL 1 (best) BASIC21.84■■□□□ 1.09
PTCD3Q96EY7 CACNA1H-210ENST00000638323 8048 ntAPPRIS ALT2 TSL 5 BASIC21.84■■□□□ 1.09
PTCD3Q96EY7 FAM107A-203ENST00000447756 1432 ntTSL 1 (best) BASIC21.84■■□□□ 1.09
PTCD3Q96EY7 STMN4-201ENST00000265770 1250 ntAPPRIS P1 TSL 1 (best) BASIC21.84■■□□□ 1.09
PTCD3Q96EY7 EVA1B-201ENST00000270824 1054 ntAPPRIS P1 TSL 2 BASIC21.84■■□□□ 1.09
PTCD3Q96EY7 HMGA2-202ENST00000393577 611 ntTSL 3 BASIC21.84■■□□□ 1.09
PTCD3Q96EY7 AC239859.2-201ENST00000444165 318 ntBASIC21.84■■□□□ 1.09
PTCD3Q96EY7 MIR4787-201ENST00000607364 84 ntBASIC21.84■■□□□ 1.09
PTCD3Q96EY7 AC092028.1-203ENST00000608262 953 ntBASIC21.84■■□□□ 1.09
PTCD3Q96EY7 JUNB-201ENST00000302754 1820 ntAPPRIS P1 BASIC21.84■■□□□ 1.09
PTCD3Q96EY7 RASEF-201ENST00000340717 1765 ntTSL 2 BASIC21.84■■□□□ 1.09
PTCD3Q96EY7 ADORA2A-AS1-203ENST00000427813 2027 ntTSL 1 (best) BASIC21.84■■□□□ 1.09
PTCD3Q96EY7 PTDSS2-201ENST00000308020 2445 ntAPPRIS P1 TSL 1 (best) BASIC21.84■■□□□ 1.09
PTCD3Q96EY7 DUSP9-201ENST00000342782 2433 ntAPPRIS P1 TSL 1 (best) BASIC21.84■■□□□ 1.09
PTCD3Q96EY7 THEM6-201ENST00000336138 2259 ntAPPRIS P1 TSL 1 (best) BASIC21.83■■□□□ 1.09
PTCD3Q96EY7 C6orf89-201ENST00000355190 1309 ntAPPRIS P3 TSL 1 (best) BASIC21.83■■□□□ 1.09
PTCD3Q96EY7 CACNG8-201ENST00000270458 8747 ntAPPRIS ALT2 TSL 1 (best) BASIC21.83■■□□□ 1.09
PTCD3Q96EY7 HIRA-201ENST00000263208 4053 ntAPPRIS P1 TSL 1 (best) BASIC21.83■■□□□ 1.09
PTCD3Q96EY7 LCK-214ENST00000619559 2099 ntAPPRIS P1 TSL 1 (best) BASIC21.83■■□□□ 1.09
PTCD3Q96EY7 TULP1-202ENST00000322263 1941 ntTSL 1 (best) BASIC21.83■■□□□ 1.09
PTCD3Q96EY7 NKX6-1-202ENST00000515820 2194 ntTSL 3 BASIC21.83■■□□□ 1.09
PTCD3Q96EY7 HNRNPUL1-222ENST00000617774 451 ntTSL 5 BASIC21.83■■□□□ 1.09
PTCD3Q96EY7 AC243829.1-202ENST00000618848 486 ntTSL 3 BASIC21.83■■□□□ 1.09
PTCD3Q96EY7 TFAP2A-202ENST00000379608 2576 ntAPPRIS ALT1 TSL 1 (best) BASIC21.83■■□□□ 1.08
PTCD3Q96EY7 TEX22-201ENST00000451127 2571 ntAPPRIS P1 TSL 2 BASIC21.83■■□□□ 1.08
PTCD3Q96EY7 OLFM1-204ENST00000371793 2444 ntAPPRIS P1 TSL 3 BASIC21.82■■□□□ 1.08
PTCD3Q96EY7 CHST7-201ENST00000276055 2289 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
PTCD3Q96EY7 PXK-202ENST00000356151 2037 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
PTCD3Q96EY7 CREB1-205ENST00000430624 2005 ntAPPRIS P1 TSL 5 BASIC21.82■■□□□ 1.08
PTCD3Q96EY7 FBXL19-205ENST00000562319 2462 ntAPPRIS ALT2 TSL 2 BASIC21.82■■□□□ 1.08
PTCD3Q96EY7 RAB33A-201ENST00000257017 1258 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
PTCD3Q96EY7 GGTA1P-203ENST00000481799 1487 ntTSL 1 (best) BASIC21.82■■□□□ 1.08
PTCD3Q96EY7 MTNR1B-201ENST00000257068 1565 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
PTCD3Q96EY7 IRF3-228ENST00000601291 1556 ntTSL 1 (best) BASIC21.82■■□□□ 1.08
PTCD3Q96EY7 ADGRB1-202ENST00000517894 6241 ntAPPRIS P1 TSL 5 BASIC21.82■■□□□ 1.08
PTCD3Q96EY7 TMEM25-205ENST00000411589 2442 ntAPPRIS ALT2 TSL 2 BASIC21.81■■□□□ 1.08
PTCD3Q96EY7 TSNARE1-208ENST00000524325 1963 ntAPPRIS P3 TSL 2 BASIC21.81■■□□□ 1.08
PTCD3Q96EY7 PPP3CC-201ENST00000240139 2189 ntAPPRIS P3 TSL 1 (best) BASIC21.81■■□□□ 1.08
PTCD3Q96EY7 ASPSCR1-202ENST00000306739 1843 ntAPPRIS P3 TSL 1 (best) BASIC21.81■■□□□ 1.08
PTCD3Q96EY7 TMEM147-203ENST00000392205 767 ntTSL 2 BASIC21.81■■□□□ 1.08
PTCD3Q96EY7 CNPY3-202ENST00000394142 954 ntTSL 5 BASIC21.81■■□□□ 1.08
Retrieved 100 of 98,524 protein–RNA pairs in 16.3 ms