Protein–RNA interactions for Protein: Q96AY4

TTC28, Tetratricopeptide repeat protein 28, humanhuman

Predictions only

Length 2,481 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TTC28Q96AY4 RHOD-202ENST00000532559 538 ntTSL 3 BASIC22.91■■□□□ 1.26
TTC28Q96AY4 AC011611.3-201ENST00000552367 569 ntTSL 4 BASIC22.91■■□□□ 1.26
TTC28Q96AY4 FGFRL1-205ENST00000510644 2304 ntAPPRIS P1 TSL 1 (best) BASIC22.91■■□□□ 1.26
TTC28Q96AY4 SDS-201ENST00000257549 1606 ntAPPRIS P1 TSL 2 BASIC22.91■■□□□ 1.26
TTC28Q96AY4 C7orf25-203ENST00000431882 1645 ntTSL 2 BASIC22.91■■□□□ 1.26
TTC28Q96AY4 RWDD4-206ENST00000512740 1393 ntTSL 5 BASIC22.91■■□□□ 1.26
TTC28Q96AY4 KIAA1522-201ENST00000294521 878 ntAPPRIS ALT2 TSL 2 BASIC22.91■■□□□ 1.26
TTC28Q96AY4 AL360181.5-201ENST00000368554 1044 ntAPPRIS P1 TSL 2 BASIC22.91■■□□□ 1.26
TTC28Q96AY4 NDUFS3-212ENST00000534208 583 ntTSL 4 BASIC22.91■■□□□ 1.26
TTC28Q96AY4 ZFYVE19-201ENST00000299173 1555 ntAPPRIS ALT2 TSL 1 (best) BASIC22.91■■□□□ 1.26
TTC28Q96AY4 ACADS-202ENST00000411593 1398 ntTSL 2 BASIC22.91■■□□□ 1.26
TTC28Q96AY4 SHISA5-201ENST00000296444 2369 ntTSL 1 (best) BASIC22.9■■□□□ 1.26
TTC28Q96AY4 CUEDC2-201ENST00000369937 1191 ntAPPRIS P1 TSL 1 (best) BASIC22.9■■□□□ 1.26
TTC28Q96AY4 UNC93B5-201ENST00000530315 699 ntBASIC22.9■■□□□ 1.26
TTC28Q96AY4 AGAP3-211ENST00000473312 2039 ntTSL 1 (best) BASIC22.9■■□□□ 1.26
TTC28Q96AY4 PPP1R3F-205ENST00000495799 1537 ntTSL 1 (best) BASIC22.9■■□□□ 1.26
TTC28Q96AY4 LIPT2-201ENST00000310109 1018 ntAPPRIS P1 TSL 2 BASIC22.9■■□□□ 1.26
TTC28Q96AY4 TFEB-204ENST00000373033 2331 ntAPPRIS P1 TSL 1 (best) BASIC22.9■■□□□ 1.26
TTC28Q96AY4 CCND3-223ENST00000616010 2047 ntTSL 5 BASIC22.9■■□□□ 1.26
TTC28Q96AY4 TSTD1-202ENST00000368023 574 ntAPPRIS ALT2 TSL 2 BASIC22.89■■□□□ 1.26
TTC28Q96AY4 UNC93B6-201ENST00000525262 1143 ntTSL 5 BASIC22.89■■□□□ 1.26
TTC28Q96AY4 C14orf28-204ENST00000557112 1097 ntTSL 5 BASIC22.89■■□□□ 1.26
TTC28Q96AY4 LINC01578-208ENST00000557147 490 ntTSL 3 BASIC22.89■■□□□ 1.26
TTC28Q96AY4 SAC3D1-201ENST00000398846 1566 ntAPPRIS P1 TSL 1 (best) BASIC22.89■■□□□ 1.25
TTC28Q96AY4 DUSP15-205ENST00000398084 1256 ntTSL 5 BASIC22.89■■□□□ 1.25
TTC28Q96AY4 KCNJ4-201ENST00000303592 2065 ntAPPRIS P1 TSL 1 (best) BASIC22.89■■□□□ 1.25
TTC28Q96AY4 MFSD5-201ENST00000329548 1760 ntAPPRIS P1 TSL 1 (best) BASIC22.88■■□□□ 1.25
TTC28Q96AY4 ACAD8-202ENST00000374752 1797 ntTSL 2 BASIC22.88■■□□□ 1.25
TTC28Q96AY4 HPF1-201ENST00000393381 1230 ntAPPRIS P1 TSL 1 (best) BASIC22.88■■□□□ 1.25
TTC28Q96AY4 ZCCHC9-204ENST00000438268 1248 ntAPPRIS P1 TSL 1 (best) BASIC22.88■■□□□ 1.25
TTC28Q96AY4 ARTN-203ENST00000414809 1943 ntAPPRIS P4 TSL 3 BASIC22.88■■□□□ 1.25
TTC28Q96AY4 ADAMTS13-204ENST00000371911 1155 ntTSL 1 (best) BASIC22.88■■□□□ 1.25
TTC28Q96AY4 DHRS4-207ENST00000559632 1003 ntTSL 1 (best) BASIC22.88■■□□□ 1.25
TTC28Q96AY4 MRPL10-202ENST00000351111 1725 ntAPPRIS P1 TSL 1 (best) BASIC22.88■■□□□ 1.25
TTC28Q96AY4 CFC1-201ENST00000259216 1046 ntAPPRIS P1 TSL 1 (best) BASIC22.87■■□□□ 1.25
TTC28Q96AY4 CFC1B-201ENST00000281882 1071 ntAPPRIS P1 TSL 1 (best) BASIC22.87■■□□□ 1.25
TTC28Q96AY4 LYRM9-201ENST00000379102 501 ntAPPRIS P1 TSL 2 BASIC22.87■■□□□ 1.25
TTC28Q96AY4 LYRM9-206ENST00000508862 807 ntTSL 3 BASIC22.87■■□□□ 1.25
TTC28Q96AY4 MYC-209ENST00000641252 345 ntBASIC22.87■■□□□ 1.25
TTC28Q96AY4 YRDC-201ENST00000373044 1826 ntAPPRIS P1 TSL 1 (best) BASIC22.87■■□□□ 1.25
TTC28Q96AY4 ATP6V0A2-209ENST00000613625 1620 ntTSL 1 (best) BASIC22.87■■□□□ 1.25
TTC28Q96AY4 FAM167B-201ENST00000373582 936 ntAPPRIS P1 TSL 1 (best) BASIC22.87■■□□□ 1.25
TTC28Q96AY4 ORMDL1-202ENST00000392349 1137 ntAPPRIS P1 TSL 1 (best) BASIC22.87■■□□□ 1.25
TTC28Q96AY4 PHB2-213ENST00000546111 858 ntTSL 2 BASIC22.87■■□□□ 1.25
TTC28Q96AY4 UBALD1-209ENST00000591897 1275 ntTSL 2 BASIC22.87■■□□□ 1.25
TTC28Q96AY4 AC012313.1-203ENST00000597980 570 ntTSL 4 BASIC22.87■■□□□ 1.25
TTC28Q96AY4 WDR37-206ENST00000620998 1303 ntTSL 5 BASIC22.87■■□□□ 1.25
TTC28Q96AY4 B4GAT1-201ENST00000311181 2072 ntAPPRIS P1 TSL 1 (best) BASIC22.87■■□□□ 1.25
TTC28Q96AY4 TMEM98-202ENST00000394642 1683 ntAPPRIS P1 TSL 2 BASIC22.87■■□□□ 1.25
TTC28Q96AY4 RBMXL2-201ENST00000306904 1874 ntAPPRIS P1 BASIC22.86■■□□□ 1.25
TTC28Q96AY4 COMMD7-201ENST00000278980 1900 ntAPPRIS P3 TSL 1 (best) BASIC22.86■■□□□ 1.25
TTC28Q96AY4 RTBDN-203ENST00000458671 1066 ntAPPRIS ALT2 TSL 1 (best) BASIC22.86■■□□□ 1.25
TTC28Q96AY4 REPIN1-217ENST00000518514 478 ntTSL 3 BASIC22.86■■□□□ 1.25
TTC28Q96AY4 AC061979.1-201ENST00000532061 434 ntTSL 5 BASIC22.86■■□□□ 1.25
TTC28Q96AY4 USF2-201ENST00000222305 1634 ntAPPRIS P1 TSL 1 (best) BASIC22.86■■□□□ 1.25
TTC28Q96AY4 USF2-207ENST00000595068 1612 ntTSL 5 BASIC22.86■■□□□ 1.25
TTC28Q96AY4 VKORC1-202ENST00000319788 1077 ntTSL 1 (best) BASIC22.86■■□□□ 1.25
TTC28Q96AY4 PARP1-202ENST00000366792 553 ntTSL 3 BASIC22.86■■□□□ 1.25
TTC28Q96AY4 APTR-203ENST00000430801 583 ntTSL 5 BASIC22.86■■□□□ 1.25
TTC28Q96AY4 NT5C3B-203ENST00000435506 975 ntAPPRIS P1 TSL 5 BASIC22.86■■□□□ 1.25
TTC28Q96AY4 HMCES-204ENST00000502878 1952 ntAPPRIS P1 TSL 1 (best) BASIC22.86■■□□□ 1.25
TTC28Q96AY4 CRNDE-210ENST00000560912 459 ntTSL 5 BASIC22.86■■□□□ 1.25
TTC28Q96AY4 TSPAN10-203ENST00000574882 1837 ntAPPRIS P2 TSL 1 (best) BASIC22.86■■□□□ 1.25
TTC28Q96AY4 ILKAP-211ENST00000612675 1335 ntTSL 1 (best) BASIC22.86■■□□□ 1.25
TTC28Q96AY4 ALDH3A2-224ENST00000626500 995 ntTSL 5 BASIC22.86■■□□□ 1.25
TTC28Q96AY4 TRAPPC6A-201ENST00000006275 805 ntTSL 1 (best) BASIC22.86■■□□□ 1.25
TTC28Q96AY4 DGCR6L-202ENST00000405465 962 ntTSL 3 BASIC22.85■■□□□ 1.25
TTC28Q96AY4 MYD88-205ENST00000424893 1279 ntAPPRIS ALT2 TSL 1 (best) BASIC22.85■■□□□ 1.25
TTC28Q96AY4 C17orf50-201ENST00000603305 569 ntTSL 3 BASIC22.85■■□□□ 1.25
TTC28Q96AY4 C17orf50-203ENST00000605587 1018 ntAPPRIS P1 TSL 1 (best) BASIC22.85■■□□□ 1.25
TTC28Q96AY4 AC073648.6-201ENST00000641589 218 ntBASIC22.85■■□□□ 1.25
TTC28Q96AY4 STK19-201ENST00000375331 1663 ntAPPRIS ALT2 TSL 1 (best) BASIC22.85■■□□□ 1.25
TTC28Q96AY4 DISC1-220ENST00000602873 1553 ntAPPRIS ALT2 TSL 1 (best) BASIC22.85■■□□□ 1.25
TTC28Q96AY4 AC096887.2-201ENST00000623443 1957 ntBASIC22.85■■□□□ 1.25
TTC28Q96AY4 AC073111.3-201ENST00000478789 635 ntAPPRIS P1 TSL 3 BASIC22.85■■□□□ 1.25
TTC28Q96AY4 ABHD14A-204ENST00000491470 674 ntTSL 3 BASIC22.85■■□□□ 1.25
TTC28Q96AY4 AL772284.2-201ENST00000620151 1147 ntAPPRIS P1 TSL 5 BASIC22.85■■□□□ 1.25
TTC28Q96AY4 MYCNOS-205ENST00000641950 531 ntBASIC22.85■■□□□ 1.25
TTC28Q96AY4 FAM118A-205ENST00000441876 1776 ntAPPRIS P1 TSL 1 (best) BASIC22.84■■□□□ 1.25
TTC28Q96AY4 TMEM35B-201ENST00000373337 922 ntAPPRIS P1 TSL 1 (best) BASIC22.84■■□□□ 1.25
TTC28Q96AY4 BRI3-207ENST00000539286 699 ntTSL 2 BASIC22.84■■□□□ 1.25
TTC28Q96AY4 PDCD2L-203ENST00000587065 492 ntTSL 3 BASIC22.84■■□□□ 1.25
TTC28Q96AY4 MKRN4P-201ENST00000444706 1521 ntBASIC22.84■■□□□ 1.25
TTC28Q96AY4 PORCN-202ENST00000355961 1848 ntAPPRIS ALT1 TSL 1 (best) BASIC22.84■■□□□ 1.25
TTC28Q96AY4 TRAPPC3-204ENST00000373166 1265 ntAPPRIS P1 TSL 1 (best) BASIC22.83■■□□□ 1.25
TTC28Q96AY4 CD99P1-203ENST00000431582 602 ntTSL 4 BASIC22.83■■□□□ 1.25
TTC28Q96AY4 ADCYAP1-202ENST00000450565 918 ntAPPRIS P1 TSL 1 (best) BASIC22.83■■□□□ 1.25
TTC28Q96AY4 PPOX-219ENST00000544598 813 ntTSL 2 BASIC22.83■■□□□ 1.25
TTC28Q96AY4 USP45-202ENST00000329966 1444 ntTSL 1 (best) BASIC22.83■■□□□ 1.25
TTC28Q96AY4 MTAP-204ENST00000460874 1434 ntTSL 2 BASIC22.83■■□□□ 1.25
TTC28Q96AY4 AC138649.1-201ENST00000619611 1449 ntTSL 1 (best) BASIC22.83■■□□□ 1.25
TTC28Q96AY4 ZFYVE1-202ENST00000394207 1183 ntTSL 2 BASIC22.83■■□□□ 1.24
TTC28Q96AY4 IL34-204ENST00000566361 1001 ntAPPRIS ALT2 TSL 1 (best) BASIC22.83■■□□□ 1.24
TTC28Q96AY4 REXO1L12P-201ENST00000622156 912 ntBASIC22.83■■□□□ 1.24
TTC28Q96AY4 C8orf58-201ENST00000289989 2016 ntAPPRIS P3 TSL 5 BASIC22.82■■□□□ 1.24
TTC28Q96AY4 GNAI2-202ENST00000313601 2464 ntAPPRIS P1 TSL 1 (best) BASIC22.82■■□□□ 1.24
TTC28Q96AY4 SFTPC-205ENST00000521315 1046 ntAPPRIS ALT1 TSL 1 (best) BASIC22.82■■□□□ 1.24
TTC28Q96AY4 TXNL4A-203ENST00000585474 1185 ntTSL 1 (best) BASIC22.82■■□□□ 1.24
TTC28Q96AY4 ADSSL1-201ENST00000330877 1766 ntAPPRIS P1 TSL 1 (best) BASIC22.82■■□□□ 1.24
TTC28Q96AY4 PHPT1-201ENST00000247665 890 ntAPPRIS P1 TSL 1 (best) BASIC22.82■■□□□ 1.24
Retrieved 100 of 98,524 protein–RNA pairs in 17.9 ms