Protein–RNA interactions for Protein: Q8WU17

RNF139, E3 ubiquitin-protein ligase RNF139, humanhuman

Predictions only

Length 664 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF139Q8WU17 C2orf82-201ENST00000331342 465 ntAPPRIS P2 TSL 1 (best) BASIC23.17■■□□□ 1.3
RNF139Q8WU17 UBE2C-202ENST00000335046 737 ntTSL 2 BASIC23.17■■□□□ 1.3
RNF139Q8WU17 AC068580.1-201ENST00000446489 252 ntTSL 3 BASIC23.17■■□□□ 1.3
RNF139Q8WU17 SUDS3P1-201ENST00000505831 966 ntBASIC23.17■■□□□ 1.3
RNF139Q8WU17 AF213884.3-201ENST00000563833 479 ntBASIC23.17■■□□□ 1.3
RNF139Q8WU17 UQCR11-202ENST00000589880 504 ntAPPRIS P1 TSL 3 BASIC23.17■■□□□ 1.3
RNF139Q8WU17 NKIRAS2-204ENST00000393880 1644 ntAPPRIS P1 TSL 2 BASIC23.17■■□□□ 1.3
RNF139Q8WU17 SYT8-201ENST00000341958 1556 ntAPPRIS ALT2 TSL 5 BASIC23.17■■□□□ 1.3
RNF139Q8WU17 CACTIN-AS1-201ENST00000592274 1913 ntTSL 2 BASIC23.17■■□□□ 1.3
RNF139Q8WU17 EGR3-203ENST00000519492 1500 ntTSL 5 BASIC23.17■■□□□ 1.3
RNF139Q8WU17 MXRA7-201ENST00000355797 5661 ntAPPRIS P4 TSL 2 BASIC23.17■■□□□ 1.3
RNF139Q8WU17 ME2-208ENST00000638937 2471 ntTSL 5 BASIC23.16■■□□□ 1.3
RNF139Q8WU17 STX10-202ENST00000343587 1128 ntTSL 1 (best) BASIC23.16■■□□□ 1.3
RNF139Q8WU17 AP001330.3-201ENST00000520123 633 ntBASIC23.16■■□□□ 1.3
RNF139Q8WU17 AC008764.7-201ENST00000593779 1081 ntBASIC23.16■■□□□ 1.3
RNF139Q8WU17 SRPK3-203ENST00000370104 1753 ntAPPRIS ALT2 TSL 1 (best) BASIC23.16■■□□□ 1.3
RNF139Q8WU17 NIPA2-205ENST00000539711 1412 ntTSL 2 BASIC23.16■■□□□ 1.3
RNF139Q8WU17 FAM136A-201ENST00000037869 1810 ntAPPRIS P1 TSL 1 (best) BASIC23.15■■□□□ 1.3
RNF139Q8WU17 AL137002.2-201ENST00000639766 2238 ntTSL 5 BASIC23.15■■□□□ 1.3
RNF139Q8WU17 SCO2-204ENST00000543927 1051 ntAPPRIS P1 TSL 2 BASIC23.15■■□□□ 1.3
RNF139Q8WU17 SCAND1-202ENST00000373991 1727 ntAPPRIS P1 TSL 1 (best) BASIC23.15■■□□□ 1.3
RNF139Q8WU17 CORO1A-201ENST00000219150 1803 ntAPPRIS P1 TSL 1 (best) BASIC23.15■■□□□ 1.3
RNF139Q8WU17 MESP2-201ENST00000341735 1552 ntAPPRIS P1 TSL 1 (best) BASIC23.14■■□□□ 1.3
RNF139Q8WU17 ASPSCR1-208ENST00000580534 1776 ntTSL 2 BASIC23.14■■□□□ 1.3
RNF139Q8WU17 HOXD1-201ENST00000331462 1975 ntAPPRIS P1 TSL 1 (best) BASIC23.14■■□□□ 1.3
RNF139Q8WU17 KCTD8-201ENST00000360029 2587 ntAPPRIS P1 TSL 1 (best) BASIC23.14■■□□□ 1.3
RNF139Q8WU17 C9orf163-202ENST00000624034 2573 ntBASIC23.14■■□□□ 1.3
RNF139Q8WU17 PEX10-204ENST00000507596 1941 ntAPPRIS ALT1 TSL 5 BASIC23.14■■□□□ 1.3
RNF139Q8WU17 C3orf58-207ENST00000495414 1876 ntTSL 2 BASIC23.14■■□□□ 1.29
RNF139Q8WU17 MIR939-201ENST00000401314 82 ntBASIC23.14■■□□□ 1.29
RNF139Q8WU17 BX842568.3-201ENST00000418104 571 ntBASIC23.14■■□□□ 1.29
RNF139Q8WU17 MYD88-205ENST00000424893 1279 ntAPPRIS ALT2 TSL 1 (best) BASIC23.14■■□□□ 1.29
RNF139Q8WU17 AP006621.3-202ENST00000530083 765 ntTSL 3 BASIC23.14■■□□□ 1.29
RNF139Q8WU17 AC027682.1-201ENST00000562846 899 ntBASIC23.14■■□□□ 1.29
RNF139Q8WU17 AL136967.2-201ENST00000623968 743 ntBASIC23.14■■□□□ 1.29
RNF139Q8WU17 PARD3-202ENST00000346874 5894 ntAPPRIS ALT2 TSL 1 (best) BASIC23.14■■□□□ 1.29
RNF139Q8WU17 PARD3-203ENST00000350537 5867 ntAPPRIS ALT2 TSL 1 (best) BASIC23.14■■□□□ 1.29
RNF139Q8WU17 SNUPN-201ENST00000308588 1513 ntAPPRIS P1 TSL 1 (best) BASIC23.13■■□□□ 1.29
RNF139Q8WU17 PRSS29P-202ENST00000568091 1864 ntTSL 5 BASIC23.13■■□□□ 1.29
RNF139Q8WU17 C12orf75-208ENST00000612117 1329 ntTSL 1 (best) BASIC23.13■■□□□ 1.29
RNF139Q8WU17 PKM-201ENST00000319622 2717 ntAPPRIS P5 TSL 2 BASIC23.13■■□□□ 1.29
RNF139Q8WU17 PFKFB3-201ENST00000317350 1999 ntAPPRIS ALT1 TSL 5 BASIC23.13■■□□□ 1.29
RNF139Q8WU17 MRPL41-201ENST00000371443 1262 ntAPPRIS P1 TSL 1 (best) BASIC23.13■■□□□ 1.29
RNF139Q8WU17 CREB3L2-203ENST00000452463 1105 ntTSL 1 (best) BASIC23.13■■□□□ 1.29
RNF139Q8WU17 AC233992.3-201ENST00000607491 485 ntBASIC23.13■■□□□ 1.29
RNF139Q8WU17 CFP-202ENST00000377005 1435 ntAPPRIS ALT2 TSL 1 (best) BASIC23.13■■□□□ 1.29
RNF139Q8WU17 MTMR14-206ENST00000420925 1427 ntAPPRIS ALT2 TSL 2 BASIC23.13■■□□□ 1.29
RNF139Q8WU17 PHC2-202ENST00000373418 2550 ntAPPRIS ALT2 TSL 1 (best) BASIC23.13■■□□□ 1.29
RNF139Q8WU17 AC004687.1-201ENST00000579003 1625 ntBASIC23.12■■□□□ 1.29
RNF139Q8WU17 CBWD5-207ENST00000382405 1791 ntAPPRIS P1 TSL 1 (best) BASIC23.12■■□□□ 1.29
RNF139Q8WU17 AL121749.1-201ENST00000635993 1768 ntTSL 5 BASIC23.12■■□□□ 1.29
RNF139Q8WU17 PARD6B-202ENST00000396039 522 ntTSL 1 (best) BASIC23.12■■□□□ 1.29
RNF139Q8WU17 AC091305.1-201ENST00000479476 895 ntBASIC23.12■■□□□ 1.29
RNF139Q8WU17 ZNF846-212ENST00000592859 1206 ntTSL 2 BASIC23.12■■□□□ 1.29
RNF139Q8WU17 FMR1-AS1-201ENST00000594922 2005 ntTSL 1 (best) BASIC23.12■■□□□ 1.29
RNF139Q8WU17 MVD-201ENST00000301012 1823 ntAPPRIS P1 TSL 1 (best) BASIC23.12■■□□□ 1.29
RNF139Q8WU17 BTBD17-201ENST00000375366 1805 ntAPPRIS P1 TSL 1 (best) BASIC23.12■■□□□ 1.29
RNF139Q8WU17 AP002761.3-201ENST00000546324 1695 ntTSL 2 BASIC23.12■■□□□ 1.29
RNF139Q8WU17 SMAD1-201ENST00000302085 1966 ntAPPRIS P1 TSL 1 (best) BASIC23.11■■□□□ 1.29
RNF139Q8WU17 NFKBID-201ENST00000396901 1834 ntAPPRIS P2 TSL 1 (best) BASIC23.11■■□□□ 1.29
RNF139Q8WU17 NFKBID-211ENST00000641389 1834 ntAPPRIS ALT2 BASIC23.11■■□□□ 1.29
RNF139Q8WU17 SNX3-202ENST00000349379 890 ntTSL 2 BASIC23.11■■□□□ 1.29
RNF139Q8WU17 CTAG2-202ENST00000369585 748 ntAPPRIS P1 TSL 1 (best) BASIC23.11■■□□□ 1.29
RNF139Q8WU17 MAG-206ENST00000597035 542 ntTSL 4 BASIC23.11■■□□□ 1.29
RNF139Q8WU17 CTU2-201ENST00000312060 1672 ntAPPRIS P3 TSL 5 BASIC23.11■■□□□ 1.29
RNF139Q8WU17 AC007326.4-201ENST00000638240 1669 ntAPPRIS P1 TSL 5 BASIC23.11■■□□□ 1.29
RNF139Q8WU17 AC098864.1-205ENST00000315302 2260 ntTSL 2 BASIC23.11■■□□□ 1.29
RNF139Q8WU17 EPS8L1-205ENST00000586329 2130 ntTSL 5 BASIC23.11■■□□□ 1.29
RNF139Q8WU17 SIRT3-204ENST00000525319 1475 ntAPPRIS ALT2 TSL 2 BASIC23.11■■□□□ 1.29
RNF139Q8WU17 H1FX-201ENST00000333762 1507 ntAPPRIS P1 BASIC23.1■■□□□ 1.29
RNF139Q8WU17 HYI-206ENST00000372434 1025 ntTSL 5 BASIC23.1■■□□□ 1.29
RNF139Q8WU17 AC099791.1-201ENST00000416440 715 ntBASIC23.1■■□□□ 1.29
RNF139Q8WU17 SLC47A1P1-202ENST00000449666 945 ntBASIC23.1■■□□□ 1.29
RNF139Q8WU17 MGAT5B-207ENST00000565675 872 ntTSL 1 (best) BASIC23.1■■□□□ 1.29
RNF139Q8WU17 SYNGR3-206ENST00000618464 1213 ntTSL 1 (best) BASIC23.1■■□□□ 1.29
RNF139Q8WU17 RASA4CP-201ENST00000424092 1398 ntBASIC23.1■■□□□ 1.29
RNF139Q8WU17 ST3GAL4-202ENST00000356132 1745 ntTSL 5 BASIC23.1■■□□□ 1.29
RNF139Q8WU17 MSANTD3-207ENST00000622639 1748 ntAPPRIS P1 TSL 3 BASIC23.1■■□□□ 1.29
RNF139Q8WU17 NKX6-3-202ENST00000524115 1683 ntTSL 2 BASIC23.09■■□□□ 1.29
RNF139Q8WU17 CCDC107-205ENST00000421582 1324 ntAPPRIS ALT2 TSL 2 BASIC23.09■■□□□ 1.29
RNF139Q8WU17 SLAIN1-213ENST00000466548 2637 ntAPPRIS ALT2 TSL 5 BASIC23.09■■□□□ 1.29
RNF139Q8WU17 LAMTOR1-201ENST00000278671 1179 ntAPPRIS P1 TSL 1 (best) BASIC23.09■■□□□ 1.29
RNF139Q8WU17 OR2I1P-207ENST00000453522 948 ntBASIC23.09■■□□□ 1.29
RNF139Q8WU17 MYDGF-203ENST00000599630 713 ntTSL 2 BASIC23.09■■□□□ 1.29
RNF139Q8WU17 CPOX-201ENST00000264193 2825 ntAPPRIS P1 TSL 1 (best) BASIC23.09■■□□□ 1.29
RNF139Q8WU17 SPINT2-201ENST00000301244 1802 ntAPPRIS P2 TSL 1 (best) BASIC23.09■■□□□ 1.29
RNF139Q8WU17 ADARB1-205ENST00000437626 5032 ntTSL 1 (best) BASIC23.09■■□□□ 1.29
RNF139Q8WU17 SNCB-206ENST00000614675 1407 ntTSL 1 (best) BASIC23.08■■□□□ 1.29
RNF139Q8WU17 UBA5-208ENST00000473651 1513 ntTSL 5 BASIC23.08■■□□□ 1.29
RNF139Q8WU17 ARRDC1-AS1-203ENST00000623970 2210 ntTSL 5 BASIC23.08■■□□□ 1.29
RNF139Q8WU17 KLC1-227ENST00000634686 2229 ntTSL 5 BASIC23.08■■□□□ 1.29
RNF139Q8WU17 EBPL-204ENST00000378272 766 ntTSL 3 BASIC23.08■■□□□ 1.29
RNF139Q8WU17 AC079305.3-201ENST00000455416 218 ntTSL 5 BASIC23.08■■□□□ 1.29
RNF139Q8WU17 ACAP1-206ENST00000571471 320 ntTSL 2 BASIC23.08■■□□□ 1.29
RNF139Q8WU17 AC126544.1-201ENST00000580842 1059 ntBASIC23.08■■□□□ 1.29
RNF139Q8WU17 CA15P2-201ENST00000611168 834 ntBASIC23.08■■□□□ 1.29
RNF139Q8WU17 HRH3-203ENST00000611492 900 ntTSL 1 (best) BASIC23.08■■□□□ 1.29
RNF139Q8WU17 ANKRD28-201ENST00000399451 6564 ntAPPRIS P1 TSL 1 (best) BASIC23.08■■□□□ 1.29
RNF139Q8WU17 STK19-202ENST00000375333 1557 ntAPPRIS P3 TSL 1 (best) BASIC23.08■■□□□ 1.29
RNF139Q8WU17 IQCJ-SCHIP1-203ENST00000476809 1780 ntAPPRIS ALT2 TSL 5 BASIC23.08■■□□□ 1.29
Retrieved 100 of 98,524 protein–RNA pairs in 16 ms