Protein–RNA interactions for Protein: Q8TD31

CCHCR1, Coiled-coil alpha-helical rod protein 1, humanhuman

Predictions only

Length 782 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCHCR1Q8TD31 DNM2-205ENST00000585892 2774 ntTSL 1 (best) BASIC22.93■■□□□ 1.26
CCHCR1Q8TD31 KCNIP1-201ENST00000328939 2014 ntAPPRIS P1 TSL 1 (best) BASIC22.93■■□□□ 1.26
CCHCR1Q8TD31 WRNIP1-204ENST00000380773 2670 ntAPPRIS P1 TSL 1 (best) BASIC22.93■■□□□ 1.26
CCHCR1Q8TD31 MT2A-201ENST00000245185 786 ntAPPRIS P1 TSL 1 (best) BASIC22.93■■□□□ 1.26
CCHCR1Q8TD31 TDRKH-205ENST00000368827 2318 ntAPPRIS P2 TSL 1 (best) BASIC22.93■■□□□ 1.26
CCHCR1Q8TD31 NOTUM-201ENST00000409678 2329 ntAPPRIS P1 TSL 1 (best) BASIC22.93■■□□□ 1.26
CCHCR1Q8TD31 SPHK1-201ENST00000323374 2138 ntTSL 1 (best) BASIC22.93■■□□□ 1.26
CCHCR1Q8TD31 PLEKHA8-208ENST00000622102 2140 ntTSL 5 BASIC22.93■■□□□ 1.26
CCHCR1Q8TD31 SLC35A3-204ENST00000427993 2062 ntAPPRIS P1 TSL 5 BASIC22.93■■□□□ 1.26
CCHCR1Q8TD31 HSF4-225ENST00000584272 1549 ntTSL 1 (best) BASIC22.92■■□□□ 1.26
CCHCR1Q8TD31 C1QTNF12-201ENST00000330388 1036 ntAPPRIS P1 TSL 1 (best) BASIC22.92■■□□□ 1.26
CCHCR1Q8TD31 CACNA1H-202ENST00000358590 8069 ntAPPRIS ALT2 TSL 5 BASIC22.92■■□□□ 1.26
CCHCR1Q8TD31 AP001267.3-203ENST00000554407 579 ntTSL 2 BASIC22.92■■□□□ 1.26
CCHCR1Q8TD31 WRAP73-201ENST00000270708 1665 ntAPPRIS P1 TSL 1 (best) BASIC22.92■■□□□ 1.26
CCHCR1Q8TD31 TMEM159-201ENST00000233047 2014 ntAPPRIS P1 TSL 1 (best) BASIC22.92■■□□□ 1.26
CCHCR1Q8TD31 SRPK3-202ENST00000370101 1958 ntAPPRIS P3 TSL 1 (best) BASIC22.92■■□□□ 1.26
CCHCR1Q8TD31 SLC25A47-202ENST00000557052 1552 ntTSL 1 (best) BASIC22.92■■□□□ 1.26
CCHCR1Q8TD31 C14orf80-201ENST00000329886 1947 ntAPPRIS ALT2 TSL 1 (best) BASIC22.92■■□□□ 1.26
CCHCR1Q8TD31 ASAP2-201ENST00000281419 5712 ntAPPRIS P3 TSL 1 (best) BASIC22.92■■□□□ 1.26
CCHCR1Q8TD31 FRAT1-201ENST00000371021 2649 ntAPPRIS P1 BASIC22.92■■□□□ 1.26
CCHCR1Q8TD31 ZC3H14-219ENST00000556945 2075 ntTSL 5 BASIC22.91■■□□□ 1.26
CCHCR1Q8TD31 LMLN-210ENST00000482695 2010 ntAPPRIS ALT2 TSL 1 (best) BASIC22.91■■□□□ 1.26
CCHCR1Q8TD31 AKT2-234ENST00000579047 2029 ntTSL 1 (best) BASIC22.91■■□□□ 1.26
CCHCR1Q8TD31 FOXJ1-201ENST00000322957 2641 ntAPPRIS P1 TSL 1 (best) BASIC22.91■■□□□ 1.26
CCHCR1Q8TD31 KLF9-201ENST00000377126 5175 ntAPPRIS P1 TSL 1 (best) BASIC22.91■■□□□ 1.26
CCHCR1Q8TD31 MALT1-201ENST00000345724 2866 ntAPPRIS ALT2 TSL 1 (best) BASIC22.91■■□□□ 1.26
CCHCR1Q8TD31 EXOG-217ENST00000630638 197 ntTSL 5 BASIC22.91■■□□□ 1.26
CCHCR1Q8TD31 CACNB3-205ENST00000547392 2237 ntTSL 5 BASIC22.91■■□□□ 1.26
CCHCR1Q8TD31 CDC20-202ENST00000372462 1777 ntAPPRIS P1 TSL 1 (best) BASIC22.91■■□□□ 1.26
CCHCR1Q8TD31 P4HA2-202ENST00000360568 2313 ntAPPRIS ALT1 TSL 1 (best) BASIC22.91■■□□□ 1.26
CCHCR1Q8TD31 MYBL1-201ENST00000517885 1714 ntTSL 5 BASIC22.91■■□□□ 1.26
CCHCR1Q8TD31 REST-206ENST00000612429 1376 ntTSL 5 BASIC22.9■■□□□ 1.26
CCHCR1Q8TD31 REST-207ENST00000616975 1370 ntTSL 5 BASIC22.9■■□□□ 1.26
CCHCR1Q8TD31 REST-212ENST00000640343 1352 ntTSL 1 (best) BASIC22.9■■□□□ 1.26
CCHCR1Q8TD31 AC144652.1-201ENST00000609974 1624 ntBASIC22.9■■□□□ 1.26
CCHCR1Q8TD31 SLC19A1-209ENST00000485649 1896 ntAPPRIS ALT2 TSL 2 BASIC22.9■■□□□ 1.26
CCHCR1Q8TD31 GSN-204ENST00000373818 2657 ntTSL 1 (best) BASIC22.9■■□□□ 1.26
CCHCR1Q8TD31 ZNF843-201ENST00000315678 2137 ntAPPRIS P2 TSL 2 BASIC22.9■■□□□ 1.26
CCHCR1Q8TD31 MFSD7-202ENST00000347950 1599 ntTSL 2 BASIC22.9■■□□□ 1.26
CCHCR1Q8TD31 ITPKC-201ENST00000263370 3385 ntAPPRIS P1 TSL 1 (best) BASIC22.9■■□□□ 1.26
CCHCR1Q8TD31 WRNIP1-203ENST00000380771 2595 ntTSL 1 (best) BASIC22.9■■□□□ 1.26
CCHCR1Q8TD31 TMEM151B-201ENST00000438774 1140 ntAPPRIS ALT2 TSL 3 BASIC22.9■■□□□ 1.26
CCHCR1Q8TD31 ERRFI1-203ENST00000469499 995 ntTSL 3 BASIC22.9■■□□□ 1.26
CCHCR1Q8TD31 AC073111.5-204ENST00000498682 1167 ntAPPRIS P1 TSL 2 BASIC22.9■■□□□ 1.26
CCHCR1Q8TD31 GRAMD4P7-201ENST00000578182 1232 ntBASIC22.9■■□□□ 1.26
CCHCR1Q8TD31 SH2D3A-201ENST00000245908 2296 ntAPPRIS P1 TSL 1 (best) BASIC22.9■■□□□ 1.26
CCHCR1Q8TD31 FOXK2-201ENST00000335255 5265 ntAPPRIS P1 TSL 1 (best) BASIC22.9■■□□□ 1.26
CCHCR1Q8TD31 SESN3-202ENST00000416495 1408 ntTSL 1 (best) BASIC22.9■■□□□ 1.26
CCHCR1Q8TD31 TMEM179-204ENST00000556573 1430 ntAPPRIS P1 TSL 3 BASIC22.9■■□□□ 1.26
CCHCR1Q8TD31 PNRC1-201ENST00000336032 2065 ntAPPRIS P1 TSL 1 (best) BASIC22.89■■□□□ 1.26
CCHCR1Q8TD31 BCS1L-210ENST00000431802 2015 ntAPPRIS P1 TSL 2 BASIC22.89■■□□□ 1.26
CCHCR1Q8TD31 ALDH16A1-202ENST00000455361 2470 ntTSL 2 BASIC22.89■■□□□ 1.26
CCHCR1Q8TD31 TPM4-201ENST00000300933 2666 ntTSL 1 (best) BASIC22.89■■□□□ 1.26
CCHCR1Q8TD31 STMN4-201ENST00000265770 1250 ntAPPRIS P1 TSL 1 (best) BASIC22.89■■□□□ 1.25
CCHCR1Q8TD31 HAUS7-211ENST00000626181 414 ntAPPRIS ALT2 TSL 5 BASIC22.89■■□□□ 1.25
CCHCR1Q8TD31 MED17-221ENST00000639724 2317 ntTSL 5 BASIC22.89■■□□□ 1.25
CCHCR1Q8TD31 RAP1B-207ENST00000450214 1466 ntTSL 2 BASIC22.89■■□□□ 1.25
CCHCR1Q8TD31 JAGN1-201ENST00000307768 1693 ntAPPRIS P1 TSL 1 (best) BASIC22.89■■□□□ 1.25
CCHCR1Q8TD31 IER2-201ENST00000292433 2085 ntAPPRIS P1 TSL 1 (best) BASIC22.89■■□□□ 1.25
CCHCR1Q8TD31 ADAD2-201ENST00000268624 2283 ntAPPRIS P3 TSL 2 BASIC22.89■■□□□ 1.25
CCHCR1Q8TD31 NIPA2-203ENST00000398013 2280 ntAPPRIS P1 TSL 1 (best) BASIC22.89■■□□□ 1.25
CCHCR1Q8TD31 BLOC1S4-201ENST00000320776 1617 ntAPPRIS P1 BASIC22.89■■□□□ 1.25
CCHCR1Q8TD31 CREB1-205ENST00000430624 2005 ntAPPRIS P1 TSL 5 BASIC22.88■■□□□ 1.25
CCHCR1Q8TD31 CNPY3-202ENST00000394142 954 ntTSL 5 BASIC22.88■■□□□ 1.25
CCHCR1Q8TD31 AL356441.2-201ENST00000443009 864 ntBASIC22.88■■□□□ 1.25
CCHCR1Q8TD31 AC243829.1-202ENST00000618848 486 ntTSL 3 BASIC22.88■■□□□ 1.25
CCHCR1Q8TD31 PIP5KL1-202ENST00000388747 2198 ntAPPRIS P1 TSL 5 BASIC22.88■■□□□ 1.25
CCHCR1Q8TD31 PLPP5-209ENST00000529359 2185 ntTSL 1 (best) BASIC22.88■■□□□ 1.25
CCHCR1Q8TD31 TMEM200B-202ENST00000521452 2501 ntAPPRIS P1 TSL 1 (best) BASIC22.88■■□□□ 1.25
CCHCR1Q8TD31 WDR86-208ENST00000628331 1905 ntTSL 5 BASIC22.88■■□□□ 1.25
CCHCR1Q8TD31 TMEM200B-201ENST00000420504 2553 ntAPPRIS P1 TSL 1 (best) BASIC22.88■■□□□ 1.25
CCHCR1Q8TD31 IRX4-201ENST00000231357 2221 ntAPPRIS P1 TSL 1 (best) BASIC22.88■■□□□ 1.25
CCHCR1Q8TD31 ASCC1-204ENST00000394915 1510 ntTSL 5 BASIC22.87■■□□□ 1.25
CCHCR1Q8TD31 TMEM44-211ENST00000473092 1508 ntTSL 1 (best) BASIC22.87■■□□□ 1.25
CCHCR1Q8TD31 SUMF1-201ENST00000272902 2159 ntAPPRIS P1 TSL 1 (best) BASIC22.87■■□□□ 1.25
CCHCR1Q8TD31 C6orf89-201ENST00000355190 1309 ntAPPRIS P3 TSL 1 (best) BASIC22.87■■□□□ 1.25
CCHCR1Q8TD31 CREB3L3-205ENST00000602257 1475 ntAPPRIS ALT2 TSL 1 (best) BASIC22.87■■□□□ 1.25
CCHCR1Q8TD31 TRIM7-202ENST00000334421 1228 ntTSL 1 (best) BASIC22.87■■□□□ 1.25
CCHCR1Q8TD31 U2AF1-202ENST00000380276 940 ntAPPRIS ALT2 TSL 1 (best) BASIC22.87■■□□□ 1.25
CCHCR1Q8TD31 AC103702.2-201ENST00000433510 1270 ntTSL 2 BASIC22.87■■□□□ 1.25
CCHCR1Q8TD31 UBFD1-208ENST00000567264 642 ntAPPRIS ALT2 TSL 5 BASIC22.87■■□□□ 1.25
CCHCR1Q8TD31 CFD-202ENST00000592860 809 ntAPPRIS ALT2 TSL 1 (best) BASIC22.87■■□□□ 1.25
CCHCR1Q8TD31 CACNB1-201ENST00000344140 1889 ntTSL 1 (best) BASIC22.87■■□□□ 1.25
CCHCR1Q8TD31 DGKQ-201ENST00000273814 4636 ntAPPRIS P2 TSL 1 (best) BASIC22.86■■□□□ 1.25
CCHCR1Q8TD31 DMRT1-201ENST00000382276 2222 ntAPPRIS P1 TSL 1 (best) BASIC22.86■■□□□ 1.25
CCHCR1Q8TD31 RNF40-201ENST00000324685 5634 ntAPPRIS P1 TSL 1 (best) BASIC22.86■■□□□ 1.25
CCHCR1Q8TD31 PICK1-202ENST00000404072 2164 ntAPPRIS P1 TSL 2 BASIC22.86■■□□□ 1.25
CCHCR1Q8TD31 NHLH1-201ENST00000302101 2563 ntAPPRIS P1 TSL 1 (best) BASIC22.86■■□□□ 1.25
CCHCR1Q8TD31 DRAP1-201ENST00000312515 989 ntAPPRIS P1 TSL 1 (best) BASIC22.86■■□□□ 1.25
CCHCR1Q8TD31 MIR6724-1-201ENST00000616420 92 ntBASIC22.86■■□□□ 1.25
CCHCR1Q8TD31 MIR6724-2-201ENST00000616483 92 ntBASIC22.86■■□□□ 1.25
CCHCR1Q8TD31 MIR6724-4-201ENST00000617390 92 ntBASIC22.86■■□□□ 1.25
CCHCR1Q8TD31 MIR6724-3-201ENST00000622482 92 ntBASIC22.86■■□□□ 1.25
CCHCR1Q8TD31 TUBBP5-204ENST00000635438 565 ntTSL 4 BASIC22.86■■□□□ 1.25
CCHCR1Q8TD31 AC092053.2-201ENST00000640557 1818 ntBASIC22.86■■□□□ 1.25
CCHCR1Q8TD31 RBPJL-202ENST00000372741 1636 ntTSL 1 (best) BASIC22.86■■□□□ 1.25
CCHCR1Q8TD31 XBP1-201ENST00000216037 1850 ntAPPRIS P2 TSL 1 (best) BASIC22.85■■□□□ 1.25
CCHCR1Q8TD31 MRGPRF-203ENST00000441623 2282 ntAPPRIS P1 TSL 2 BASIC22.85■■□□□ 1.25
CCHCR1Q8TD31 AC005703.6-201ENST00000623265 1329 ntBASIC22.85■■□□□ 1.25
CCHCR1Q8TD31 GAS2L1-206ENST00000610653 2238 ntTSL 1 (best) BASIC22.85■■□□□ 1.25
Retrieved 100 of 98,524 protein–RNA pairs in 33.3 ms