Protein–RNA interactions for Protein: Q8N6Y0

USHBP1, Usher syndrome type-1C protein-binding protein 1, humanhuman

Predictions only

Length 703 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USHBP1Q8N6Y0 GSR-204ENST00000537535 1323 ntTSL 1 (best) BASIC29.41■■■□□ 2.3
USHBP1Q8N6Y0 GJC1-209ENST00000592524 1837 ntAPPRIS P1 TSL 2 BASIC29.41■■■□□ 2.3
USHBP1Q8N6Y0 SCAMP3-202ENST00000355379 1537 ntTSL 1 (best) BASIC29.4■■■□□ 2.3
USHBP1Q8N6Y0 TMEM121-201ENST00000392519 1532 ntAPPRIS P1 TSL 1 (best) BASIC29.4■■■□□ 2.3
USHBP1Q8N6Y0 B4GAT1-201ENST00000311181 2072 ntAPPRIS P1 TSL 1 (best) BASIC29.4■■■□□ 2.3
USHBP1Q8N6Y0 SOCS1-201ENST00000332029 1225 ntAPPRIS P1 TSL 1 (best) BASIC29.4■■■□□ 2.3
USHBP1Q8N6Y0 MPRIP-203ENST00000395806 527 ntTSL 3 BASIC29.4■■■□□ 2.3
USHBP1Q8N6Y0 IDNK-204ENST00000454393 1210 ntTSL 3 BASIC29.4■■■□□ 2.3
USHBP1Q8N6Y0 AC068385.1-201ENST00000533218 409 ntTSL 3 BASIC29.4■■■□□ 2.3
USHBP1Q8N6Y0 ZDHHC16-203ENST00000353979 1647 ntTSL 1 (best) BASIC29.4■■■□□ 2.3
USHBP1Q8N6Y0 TBC1D22A-202ENST00000355704 1886 ntTSL 1 (best) BASIC29.4■■■□□ 2.3
USHBP1Q8N6Y0 ABHD8-201ENST00000247706 2090 ntAPPRIS P1 TSL 1 (best) BASIC29.4■■■□□ 2.3
USHBP1Q8N6Y0 CLPTM1-201ENST00000337392 2604 ntAPPRIS P1 TSL 1 (best) BASIC29.4■■■□□ 2.3
USHBP1Q8N6Y0 GP1BB-201ENST00000366425 1553 ntAPPRIS P1 TSL 1 (best) BASIC29.39■■■□□ 2.3
USHBP1Q8N6Y0 MELTF-AS1-202ENST00000415244 951 ntTSL 1 (best) BASIC29.39■■■□□ 2.3
USHBP1Q8N6Y0 AC007773.1-201ENST00000592680 972 ntTSL 2 BASIC29.39■■■□□ 2.3
USHBP1Q8N6Y0 ARFIP2-202ENST00000396777 1868 ntAPPRIS P1 TSL 2 BASIC29.39■■■□□ 2.3
USHBP1Q8N6Y0 OTUD5-203ENST00000396743 2682 ntAPPRIS ALT1 TSL 1 (best) BASIC29.39■■■□□ 2.3
USHBP1Q8N6Y0 PON2-217ENST00000633192 1876 ntTSL 1 (best) BASIC29.38■■■□□ 2.29
USHBP1Q8N6Y0 CPLX1-201ENST00000304062 2181 ntAPPRIS P1 TSL 1 (best) BASIC29.38■■■□□ 2.29
USHBP1Q8N6Y0 POLR2F-203ENST00000407936 582 ntTSL 3 BASIC29.38■■■□□ 2.29
USHBP1Q8N6Y0 POLR2F-207ENST00000460648 518 ntTSL 4 BASIC29.38■■■□□ 2.29
USHBP1Q8N6Y0 AC061979.1-201ENST00000532061 434 ntTSL 5 BASIC29.38■■■□□ 2.29
USHBP1Q8N6Y0 AC004528.2-201ENST00000610701 440 ntTSL 5 BASIC29.38■■■□□ 2.29
USHBP1Q8N6Y0 LINC00543-201ENST00000567234 1845 ntBASIC29.38■■■□□ 2.29
USHBP1Q8N6Y0 ABCB10P4-201ENST00000566803 2184 ntBASIC29.37■■■□□ 2.29
USHBP1Q8N6Y0 YIF1B-202ENST00000337679 1257 ntTSL 1 (best) BASIC29.37■■■□□ 2.29
USHBP1Q8N6Y0 TPRG1LP1-201ENST00000598702 760 ntBASIC29.37■■■□□ 2.29
USHBP1Q8N6Y0 TMEM230-210ENST00000612323 1231 ntTSL 1 (best) BASIC29.37■■■□□ 2.29
USHBP1Q8N6Y0 TMEM182-210ENST00000639249 1025 ntTSL 5 BASIC29.37■■■□□ 2.29
USHBP1Q8N6Y0 PRMT5-213ENST00000553897 1857 ntTSL 2 BASIC29.36■■■□□ 2.29
USHBP1Q8N6Y0 H19-210ENST00000439725 1929 ntTSL 2 BASIC29.36■■■□□ 2.29
USHBP1Q8N6Y0 RAMP2-201ENST00000253796 780 ntAPPRIS P2 TSL 1 (best) BASIC29.36■■■□□ 2.29
USHBP1Q8N6Y0 PHLDA3-201ENST00000367309 896 ntAPPRIS P1 TSL 5 BASIC29.36■■■□□ 2.29
USHBP1Q8N6Y0 PPCS-202ENST00000372560 793 ntTSL 1 (best) BASIC29.36■■■□□ 2.29
USHBP1Q8N6Y0 ASMT-202ENST00000381233 989 ntTSL 1 (best) BASIC29.36■■■□□ 2.29
USHBP1Q8N6Y0 GNAO1-211ENST00000570235 568 ntTSL 2 BASIC29.36■■■□□ 2.29
USHBP1Q8N6Y0 ANAPC11-219ENST00000583839 499 ntAPPRIS P1 TSL 2 BASIC29.36■■■□□ 2.29
USHBP1Q8N6Y0 CBWD5-207ENST00000382405 1791 ntAPPRIS P1 TSL 1 (best) BASIC29.36■■■□□ 2.29
USHBP1Q8N6Y0 PTPA-202ENST00000347048 1989 ntTSL 1 (best) BASIC29.35■■■□□ 2.29
USHBP1Q8N6Y0 AL591684.2-201ENST00000605970 1594 ntTSL 5 BASIC29.35■■■□□ 2.29
USHBP1Q8N6Y0 ANKRD11-217ENST00000613312 1584 ntAPPRIS ALT2 TSL 5 BASIC29.35■■■□□ 2.29
USHBP1Q8N6Y0 ORMDL1-202ENST00000392349 1137 ntAPPRIS P1 TSL 1 (best) BASIC29.35■■■□□ 2.29
USHBP1Q8N6Y0 HTATIP2-204ENST00000451739 1748 ntAPPRIS P1 TSL 1 (best) BASIC29.34■■■□□ 2.29
USHBP1Q8N6Y0 GZMM-201ENST00000264553 940 ntAPPRIS P1 TSL 1 (best) BASIC29.34■■■□□ 2.29
USHBP1Q8N6Y0 AC099681.3-201ENST00000421500 939 ntTSL 4 BASIC29.34■■■□□ 2.29
USHBP1Q8N6Y0 FGF12-AS2-201ENST00000443165 580 ntTSL 4 BASIC29.34■■■□□ 2.29
USHBP1Q8N6Y0 AP001363.2-201ENST00000538101 391 ntTSL 3 BASIC29.34■■■□□ 2.29
USHBP1Q8N6Y0 THAP4-204ENST00000407315 2367 ntAPPRIS P1 TSL 1 (best) BASIC29.34■■■□□ 2.29
USHBP1Q8N6Y0 FAM185A-201ENST00000409231 1446 ntAPPRIS ALT2 TSL 2 BASIC29.34■■■□□ 2.29
USHBP1Q8N6Y0 CKMT1B-207ENST00000441322 1747 ntAPPRIS P1 TSL 1 (best) BASIC29.34■■■□□ 2.29
USHBP1Q8N6Y0 FLOT1-201ENST00000376389 1912 ntAPPRIS P1 TSL 1 (best) BASIC29.33■■■□□ 2.29
USHBP1Q8N6Y0 UXS1-201ENST00000283148 2099 ntAPPRIS ALT1 TSL 2 BASIC29.33■■■□□ 2.29
USHBP1Q8N6Y0 HSD17B14-201ENST00000263278 1238 ntAPPRIS P1 TSL 1 (best) BASIC29.33■■■□□ 2.29
USHBP1Q8N6Y0 NUDT14-202ENST00000392568 845 ntAPPRIS P1 TSL 1 (best) BASIC29.33■■■□□ 2.29
USHBP1Q8N6Y0 MFF-208ENST00000409616 1247 ntTSL 5 BASIC29.33■■■□□ 2.29
USHBP1Q8N6Y0 COX4I1-216ENST00000568794 794 ntTSL 5 BASIC29.33■■■□□ 2.29
USHBP1Q8N6Y0 GPR35-204ENST00000430267 1399 ntAPPRIS ALT2 TSL 5 BASIC29.33■■■□□ 2.29
USHBP1Q8N6Y0 XPA-201ENST00000375128 1417 ntAPPRIS P1 TSL 1 (best) BASIC29.33■■■□□ 2.29
USHBP1Q8N6Y0 EI24-211ENST00000534546 1544 ntTSL 2 BASIC29.33■■■□□ 2.29
USHBP1Q8N6Y0 KISS1R-201ENST00000234371 1625 ntAPPRIS P1 TSL 1 (best) BASIC29.33■■■□□ 2.29
USHBP1Q8N6Y0 AL139125.2-201ENST00000623134 1869 ntBASIC29.33■■■□□ 2.29
USHBP1Q8N6Y0 HSF1-204ENST00000528838 2142 ntAPPRIS P1 TSL 1 (best) BASIC29.32■■■□□ 2.28
USHBP1Q8N6Y0 AL353803.4-201ENST00000565882 1934 ntBASIC29.32■■■□□ 2.28
USHBP1Q8N6Y0 PYCR1-202ENST00000337943 1890 ntTSL 1 (best) BASIC29.32■■■□□ 2.28
USHBP1Q8N6Y0 LRRC24-201ENST00000529415 1758 ntAPPRIS P2 TSL 1 (best) BASIC29.32■■■□□ 2.28
USHBP1Q8N6Y0 MRPS2-202ENST00000371785 1640 ntAPPRIS P1 TSL 3 BASIC29.32■■■□□ 2.28
USHBP1Q8N6Y0 UBA5-208ENST00000473651 1513 ntTSL 5 BASIC29.32■■■□□ 2.28
USHBP1Q8N6Y0 ID1-201ENST00000376105 1233 ntBASIC29.32■■■□□ 2.28
USHBP1Q8N6Y0 ZNF696-205ENST00000521537 705 ntTSL 2 BASIC29.32■■■□□ 2.28
USHBP1Q8N6Y0 AC012414.4-201ENST00000560839 1074 ntTSL 5 BASIC29.32■■■□□ 2.28
USHBP1Q8N6Y0 CIRBP-222ENST00000589235 1073 ntAPPRIS ALT1 TSL 2 BASIC29.32■■■□□ 2.28
USHBP1Q8N6Y0 AC060814.5-201ENST00000630916 1074 ntTSL 2 BASIC29.32■■■□□ 2.28
USHBP1Q8N6Y0 DTNB-206ENST00000404103 2384 ntAPPRIS ALT2 TSL 5 BASIC29.32■■■□□ 2.28
USHBP1Q8N6Y0 IQCJ-SCHIP1-202ENST00000460298 1884 ntAPPRIS ALT2 TSL 1 (best) BASIC29.31■■■□□ 2.28
USHBP1Q8N6Y0 UHRF2-202ENST00000381373 802 ntTSL 3 BASIC29.31■■■□□ 2.28
USHBP1Q8N6Y0 HOMER2-201ENST00000304231 1990 ntAPPRIS P4 TSL 5 BASIC29.31■■■□□ 2.28
USHBP1Q8N6Y0 POU2F3-206ENST00000543440 1953 ntAPPRIS P1 TSL 1 (best) BASIC29.31■■■□□ 2.28
USHBP1Q8N6Y0 MAZ-202ENST00000322945 2532 ntAPPRIS ALT2 TSL 1 (best) BASIC29.31■■■□□ 2.28
USHBP1Q8N6Y0 H1FX-201ENST00000333762 1507 ntAPPRIS P1 BASIC29.3■■■□□ 2.28
USHBP1Q8N6Y0 SEC22C-207ENST00000423701 1458 ntTSL 1 (best) BASIC29.3■■■□□ 2.28
USHBP1Q8N6Y0 TMEM41B-207ENST00000611268 1440 ntAPPRIS P1 TSL 1 (best) BASIC29.3■■■□□ 2.28
USHBP1Q8N6Y0 FOXA3-201ENST00000302177 1989 ntAPPRIS P1 TSL 1 (best) BASIC29.3■■■□□ 2.28
USHBP1Q8N6Y0 SDHAP3-201ENST00000436493 736 ntTSL 1 (best) BASIC29.3■■■□□ 2.28
USHBP1Q8N6Y0 NDUFB2-207ENST00000465506 1101 ntAPPRIS P1 TSL 1 (best) BASIC29.3■■■□□ 2.28
USHBP1Q8N6Y0 GABARAPL2-205ENST00000568455 646 ntTSL 3 BASIC29.3■■■□□ 2.28
USHBP1Q8N6Y0 VIM-AS1-202ENST00000605833 918 ntTSL 3 BASIC29.3■■■□□ 2.28
USHBP1Q8N6Y0 PDIA2-201ENST00000219406 1698 ntAPPRIS P2 TSL 1 (best) BASIC29.3■■■□□ 2.28
USHBP1Q8N6Y0 MIS18A-201ENST00000290130 1575 ntAPPRIS P1 TSL 1 (best) BASIC29.3■■■□□ 2.28
USHBP1Q8N6Y0 PLEKHA8-202ENST00000396257 1907 ntTSL 1 (best) BASIC29.3■■■□□ 2.28
USHBP1Q8N6Y0 NPAS1-208ENST00000602212 2117 ntAPPRIS P1 TSL 1 (best) BASIC29.29■■■□□ 2.28
USHBP1Q8N6Y0 DENND3-207ENST00000518347 850 ntTSL 2 BASIC29.29■■■□□ 2.28
USHBP1Q8N6Y0 AC084116.4-201ENST00000524320 484 ntTSL 2 BASIC29.29■■■□□ 2.28
USHBP1Q8N6Y0 ACYP1-205ENST00000555463 789 ntTSL 2 BASIC29.29■■■□□ 2.28
USHBP1Q8N6Y0 SEC11A-208ENST00000559729 1256 ntTSL 2 BASIC29.29■■■□□ 2.28
USHBP1Q8N6Y0 RNASEH2B-206ENST00000611510 1257 ntTSL 5 BASIC29.29■■■□□ 2.28
USHBP1Q8N6Y0 BLOC1S4-201ENST00000320776 1617 ntAPPRIS P1 BASIC29.29■■■□□ 2.28
USHBP1Q8N6Y0 LSM8-203ENST00000422760 1920 ntTSL 1 (best) BASIC29.29■■■□□ 2.28
USHBP1Q8N6Y0 CFP-202ENST00000377005 1435 ntAPPRIS ALT2 TSL 1 (best) BASIC29.28■■■□□ 2.28
USHBP1Q8N6Y0 CYP2A13-201ENST00000330436 1739 ntAPPRIS P1 TSL 1 (best) BASIC29.28■■■□□ 2.28
Retrieved 100 of 98,524 protein–RNA pairs in 28.3 ms