Protein–RNA interactions for Protein: Q8IYX3

CCDC116, Coiled-coil domain-containing protein 116, humanhuman

Predictions only

Length 515 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC116Q8IYX3 ECHDC1-203ENST00000368291 1354 ntTSL 2 BASIC20.77■□□□□ 0.92
CCDC116Q8IYX3 CACNG2-201ENST00000300105 2384 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
CCDC116Q8IYX3 GATA2-AS1-201ENST00000464242 1163 ntTSL 2 BASIC20.77■□□□□ 0.92
CCDC116Q8IYX3 LRRK1-208ENST00000532029 1241 ntTSL 1 (best) BASIC20.77■□□□□ 0.92
CCDC116Q8IYX3 TRAF7-203ENST00000565383 799 ntTSL 5 BASIC20.77■□□□□ 0.92
CCDC116Q8IYX3 TMC6-218ENST00000591436 1155 ntTSL 1 (best) BASIC20.77■□□□□ 0.92
CCDC116Q8IYX3 MIR663AHG-233ENST00000609248 830 ntTSL 5 BASIC20.77■□□□□ 0.92
CCDC116Q8IYX3 HOXA11-AS1_1.1-201ENST00000613939 98 ntBASIC20.77■□□□□ 0.92
CCDC116Q8IYX3 PTPN13-205ENST00000502971 1708 ntTSL 1 (best) BASIC20.77■□□□□ 0.92
CCDC116Q8IYX3 GTSE1-AS1-202ENST00000623117 1518 ntBASIC20.77■□□□□ 0.92
CCDC116Q8IYX3 CACNB1-201ENST00000344140 1889 ntTSL 1 (best) BASIC20.77■□□□□ 0.92
CCDC116Q8IYX3 HACD1-202ENST00000361271 2237 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.91
CCDC116Q8IYX3 SOX10-201ENST00000360880 2861 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
CCDC116Q8IYX3 SOX10-202ENST00000396884 2879 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
CCDC116Q8IYX3 CNN3-201ENST00000370206 2165 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
CCDC116Q8IYX3 NUDT18-201ENST00000611621 1497 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
CCDC116Q8IYX3 PNRC1-201ENST00000336032 2065 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
CCDC116Q8IYX3 COG8-201ENST00000562081 1731 ntAPPRIS P1 TSL 5 BASIC20.76■□□□□ 0.91
CCDC116Q8IYX3 AFDN-AS1-201ENST00000359760 2238 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
CCDC116Q8IYX3 AUTS2-203ENST00000406775 5950 ntAPPRIS ALT2 TSL 1 (best) BASIC20.76■□□□□ 0.91
CCDC116Q8IYX3 DENND2D-202ENST00000369752 1894 ntAPPRIS ALT2 TSL 2 BASIC20.76■□□□□ 0.91
CCDC116Q8IYX3 ACSF2-207ENST00000504392 1881 ntTSL 2 BASIC20.76■□□□□ 0.91
CCDC116Q8IYX3 CLYBL-202ENST00000376354 1127 ntTSL 5 BASIC20.76■□□□□ 0.91
CCDC116Q8IYX3 SSR2-210ENST00000480567 895 ntAPPRIS P1 TSL 2 BASIC20.76■□□□□ 0.91
CCDC116Q8IYX3 AL499627.2-201ENST00000606283 725 ntBASIC20.76■□□□□ 0.91
CCDC116Q8IYX3 AC131212.1-201ENST00000613771 668 ntBASIC20.76■□□□□ 0.91
CCDC116Q8IYX3 GRAMD1B-217ENST00000640939 1212 ntTSL 5 BASIC20.76■□□□□ 0.91
CCDC116Q8IYX3 UBA5-208ENST00000473651 1513 ntTSL 5 BASIC20.76■□□□□ 0.91
CCDC116Q8IYX3 CADM1-201ENST00000331581 1766 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
CCDC116Q8IYX3 MAPK12-211ENST00000622558 1779 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
CCDC116Q8IYX3 HSPBP1-206ENST00000587922 1449 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
CCDC116Q8IYX3 WRAP73-201ENST00000270708 1665 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
CCDC116Q8IYX3 HNRNPM-202ENST00000348943 2568 ntAPPRIS ALT2 TSL 1 (best) BASIC20.76■□□□□ 0.91
CCDC116Q8IYX3 GPSM1-204ENST00000429455 2057 ntTSL 3 BASIC20.76■□□□□ 0.91
CCDC116Q8IYX3 VAV3-202ENST00000370056 4990 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
CCDC116Q8IYX3 H2AFY2-201ENST00000373255 1980 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
CCDC116Q8IYX3 FAM47E-201ENST00000424749 1484 ntAPPRIS P3 TSL 5 BASIC20.75■□□□□ 0.91
CCDC116Q8IYX3 UBE3C-209ENST00000611269 1866 ntTSL 2 BASIC20.75■□□□□ 0.91
CCDC116Q8IYX3 ELOA-201ENST00000418390 5154 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
CCDC116Q8IYX3 H1FX-201ENST00000333762 1507 ntAPPRIS P1 BASIC20.75■□□□□ 0.91
CCDC116Q8IYX3 STK19-201ENST00000375331 1663 ntAPPRIS ALT2 TSL 1 (best) BASIC20.75■□□□□ 0.91
CCDC116Q8IYX3 TMEM134-202ENST00000393877 823 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
CCDC116Q8IYX3 AC131281.2-201ENST00000520478 145 ntBASIC20.75■□□□□ 0.91
CCDC116Q8IYX3 ZNF419-210ENST00000520540 568 ntTSL 4 BASIC20.75■□□□□ 0.91
CCDC116Q8IYX3 AL445237.1-202ENST00000604581 425 ntTSL 5 BASIC20.75■□□□□ 0.91
CCDC116Q8IYX3 pRNA.6-201ENST00000610482 90 ntBASIC20.75■□□□□ 0.91
CCDC116Q8IYX3 pRNA.5-201ENST00000612139 90 ntBASIC20.75■□□□□ 0.91
CCDC116Q8IYX3 pRNA.11-201ENST00000618423 90 ntBASIC20.75■□□□□ 0.91
CCDC116Q8IYX3 pRNA.13-201ENST00000619112 90 ntBASIC20.75■□□□□ 0.91
CCDC116Q8IYX3 SLC35A3-216ENST00000639221 1032 ntTSL 5 BASIC20.75■□□□□ 0.91
CCDC116Q8IYX3 CFP-202ENST00000377005 1435 ntAPPRIS ALT2 TSL 1 (best) BASIC20.75■□□□□ 0.91
CCDC116Q8IYX3 NAPRT-204ENST00000449291 1965 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
CCDC116Q8IYX3 CRHR1-202ENST00000314537 2535 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
CCDC116Q8IYX3 SDC3-202ENST00000339394 1580 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
CCDC116Q8IYX3 ARL2BP-201ENST00000219204 2130 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
CCDC116Q8IYX3 DPEP2-204ENST00000572888 2112 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
CCDC116Q8IYX3 SCAND1-202ENST00000373991 1727 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
CCDC116Q8IYX3 ANKS6-201ENST00000353234 7164 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
CCDC116Q8IYX3 ZNF395-210ENST00000523095 1790 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
CCDC116Q8IYX3 IGSF21-201ENST00000251296 1943 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
CCDC116Q8IYX3 B3GALT4-204ENST00000451237 1694 ntAPPRIS P1 BASIC20.74■□□□□ 0.91
CCDC116Q8IYX3 TPRN-202ENST00000409012 2718 ntAPPRIS P2 TSL 1 (best) BASIC20.74■□□□□ 0.91
CCDC116Q8IYX3 TNFRSF6B-201ENST00000369996 1124 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
CCDC116Q8IYX3 PPP2R3B-202ENST00000390665 2151 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
CCDC116Q8IYX3 IL15RA-209ENST00000397255 759 ntAPPRIS ALT2 TSL 5 BASIC20.74■□□□□ 0.91
CCDC116Q8IYX3 DPP10-AS1-201ENST00000432658 730 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
CCDC116Q8IYX3 SMARCA5-AS1-201ENST00000500800 945 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
CCDC116Q8IYX3 IL15RA-216ENST00000530685 660 ntTSL 5 BASIC20.74■□□□□ 0.91
CCDC116Q8IYX3 ARHGDIA-217ENST00000584461 886 ntTSL 2 BASIC20.74■□□□□ 0.91
CCDC116Q8IYX3 AC010336.5-201ENST00000594308 317 ntTSL 3 BASIC20.74■□□□□ 0.91
CCDC116Q8IYX3 CACNA1H-210ENST00000638323 8048 ntAPPRIS ALT2 TSL 5 BASIC20.74■□□□□ 0.91
CCDC116Q8IYX3 PGF-206ENST00000555567 1927 ntAPPRIS P3 TSL 1 (best) BASIC20.74■□□□□ 0.91
CCDC116Q8IYX3 NKIRAS2-204ENST00000393880 1644 ntAPPRIS P1 TSL 2 BASIC20.74■□□□□ 0.91
CCDC116Q8IYX3 HAS1-202ENST00000540069 2110 ntAPPRIS ALT2 TSL 1 (best) BASIC20.74■□□□□ 0.91
CCDC116Q8IYX3 PARD3-209ENST00000374790 5825 ntTSL 5 BASIC20.73■□□□□ 0.91
CCDC116Q8IYX3 ESRRAP2-201ENST00000418437 1549 ntBASIC20.73■□□□□ 0.91
CCDC116Q8IYX3 AC096677.1-201ENST00000454651 1516 ntTSL 2 BASIC20.73■□□□□ 0.91
CCDC116Q8IYX3 KCNT1-201ENST00000263604 5245 ntAPPRIS ALT2 TSL 5 BASIC20.73■□□□□ 0.91
CCDC116Q8IYX3 C2orf72-201ENST00000373640 3657 ntAPPRIS P1 TSL 2 BASIC20.73■□□□□ 0.91
CCDC116Q8IYX3 TANGO2-210ENST00000432883 2084 ntTSL 2 BASIC20.73■□□□□ 0.91
CCDC116Q8IYX3 THOC6-202ENST00000326266 1419 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
CCDC116Q8IYX3 NDUFV2-201ENST00000318388 930 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
CCDC116Q8IYX3 ACYP2-202ENST00000394666 993 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
CCDC116Q8IYX3 TMEM165-204ENST00000506198 828 ntTSL 2 BASIC20.73■□□□□ 0.91
CCDC116Q8IYX3 SHISA9-205ENST00000639941 1135 ntAPPRIS ALT2 TSL 5 BASIC20.73■□□□□ 0.91
CCDC116Q8IYX3 PPP1R12B-202ENST00000356764 1687 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
CCDC116Q8IYX3 NHLH1-201ENST00000302101 2563 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
CCDC116Q8IYX3 AL117328.2-201ENST00000624617 1940 ntBASIC20.72■□□□□ 0.91
CCDC116Q8IYX3 TPM4-201ENST00000300933 2666 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
CCDC116Q8IYX3 ZFP69B-204ENST00000484445 1976 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
CCDC116Q8IYX3 EGR4-202ENST00000545030 2372 ntAPPRIS P2 TSL 1 (best) BASIC20.72■□□□□ 0.91
CCDC116Q8IYX3 NR2F1-AS1-210ENST00000606739 1431 ntTSL 2 BASIC20.72■□□□□ 0.91
CCDC116Q8IYX3 CREB1-205ENST00000430624 2005 ntAPPRIS P1 TSL 5 BASIC20.72■□□□□ 0.91
CCDC116Q8IYX3 MAST4-206ENST00000406374 1066 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
CCDC116Q8IYX3 CCER2-201ENST00000571838 1057 ntAPPRIS P2 TSL 5 BASIC20.72■□□□□ 0.91
CCDC116Q8IYX3 SCUBE1-208ENST00000615096 1119 ntTSL 2 BASIC20.72■□□□□ 0.91
CCDC116Q8IYX3 AP002761.3-201ENST00000546324 1695 ntTSL 2 BASIC20.72■□□□□ 0.91
CCDC116Q8IYX3 C8orf82-202ENST00000524821 2476 ntAPPRIS P2 TSL 1 (best) BASIC20.72■□□□□ 0.91
CCDC116Q8IYX3 HTATSF1-201ENST00000218364 2775 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
CCDC116Q8IYX3 PLPP1-201ENST00000264775 1550 ntAPPRIS P4 TSL 1 (best) BASIC20.72■□□□□ 0.91
Retrieved 100 of 98,524 protein–RNA pairs in 17.6 ms