Protein–RNA interactions for Protein: Q8IWA6

CCDC60, Coiled-coil domain-containing protein 60, humanhuman

Predicted RBP Predictions only

Length 550 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC60Q8IWA6 FRS3-202ENST00000373018 2174 ntAPPRIS P1 TSL 3 BASIC24.66■■□□□ 1.54
CCDC60Q8IWA6 EGR3-203ENST00000519492 1500 ntTSL 5 BASIC24.66■■□□□ 1.54
CCDC60Q8IWA6 NFKBID-201ENST00000396901 1834 ntAPPRIS P2 TSL 1 (best) BASIC24.65■■□□□ 1.54
CCDC60Q8IWA6 NFKBID-211ENST00000641389 1834 ntAPPRIS ALT2 BASIC24.65■■□□□ 1.54
CCDC60Q8IWA6 SETD9-211ENST00000628593 1306 ntTSL 1 (best) BASIC24.65■■□□□ 1.54
CCDC60Q8IWA6 ST3GAL4-202ENST00000356132 1745 ntTSL 5 BASIC24.65■■□□□ 1.54
CCDC60Q8IWA6 POLR3GL-201ENST00000369313 818 ntTSL 2 BASIC24.65■■□□□ 1.54
CCDC60Q8IWA6 CKLF-205ENST00000417030 628 ntAPPRIS ALT2 TSL 4 BASIC24.65■■□□□ 1.54
CCDC60Q8IWA6 RAB11FIP1-203ENST00000522727 1866 ntTSL 1 (best) BASIC24.65■■□□□ 1.54
CCDC60Q8IWA6 OTUB1-212ENST00000543988 1259 ntTSL 1 (best) BASIC24.65■■□□□ 1.54
CCDC60Q8IWA6 ACYP1-205ENST00000555463 789 ntTSL 2 BASIC24.65■■□□□ 1.54
CCDC60Q8IWA6 TSKU-201ENST00000333090 2712 ntAPPRIS P1 TSL 1 (best) BASIC24.65■■□□□ 1.54
CCDC60Q8IWA6 POLDIP2-201ENST00000540200 2121 ntAPPRIS P1 TSL 1 (best) BASIC24.65■■□□□ 1.54
CCDC60Q8IWA6 ANKRD53-204ENST00000457410 1671 ntTSL 5 BASIC24.65■■□□□ 1.54
CCDC60Q8IWA6 GIT1-210ENST00000579937 2798 ntTSL 2 BASIC24.65■■□□□ 1.54
CCDC60Q8IWA6 CDC16-206ENST00000375310 2156 ntTSL 1 (best) BASIC24.64■■□□□ 1.54
CCDC60Q8IWA6 CNPY3-201ENST00000372836 1704 ntAPPRIS P1 TSL 1 (best) BASIC24.64■■□□□ 1.54
CCDC60Q8IWA6 MFSD7-201ENST00000322224 2123 ntAPPRIS P3 TSL 1 (best) BASIC24.64■■□□□ 1.54
CCDC60Q8IWA6 CCDC28B-201ENST00000373602 1089 ntAPPRIS P1 TSL 1 (best) BASIC24.64■■□□□ 1.54
CCDC60Q8IWA6 AC084116.4-201ENST00000524320 484 ntTSL 2 BASIC24.64■■□□□ 1.54
CCDC60Q8IWA6 SSPN-204ENST00000535504 419 ntTSL 1 (best) BASIC24.64■■□□□ 1.54
CCDC60Q8IWA6 PLD4-205ENST00000553861 667 ntTSL 2 BASIC24.64■■□□□ 1.54
CCDC60Q8IWA6 ZFPM1-201ENST00000319555 5380 ntAPPRIS P1 TSL 1 (best) BASIC24.64■■□□□ 1.53
CCDC60Q8IWA6 C3orf58-207ENST00000495414 1876 ntTSL 2 BASIC24.64■■□□□ 1.53
CCDC60Q8IWA6 HSF1-201ENST00000400780 2105 ntTSL 5 BASIC24.64■■□□□ 1.53
CCDC60Q8IWA6 HTATIP2-204ENST00000451739 1748 ntAPPRIS P1 TSL 1 (best) BASIC24.64■■□□□ 1.53
CCDC60Q8IWA6 CPLX1-201ENST00000304062 2181 ntAPPRIS P1 TSL 1 (best) BASIC24.63■■□□□ 1.53
CCDC60Q8IWA6 FBXO45-201ENST00000311630 5899 ntAPPRIS P1 TSL 1 (best) BASIC24.63■■□□□ 1.53
CCDC60Q8IWA6 BBC3-202ENST00000341983 1538 ntTSL 1 (best) BASIC24.63■■□□□ 1.53
CCDC60Q8IWA6 AK1-201ENST00000223836 736 ntTSL 3 BASIC24.63■■□□□ 1.53
CCDC60Q8IWA6 MIR5787-201ENST00000611784 55 ntBASIC24.63■■□□□ 1.53
CCDC60Q8IWA6 EN1-201ENST00000295206 2457 ntAPPRIS P1 TSL 2 BASIC24.63■■□□□ 1.53
CCDC60Q8IWA6 SOX1-201ENST00000330949 2842 ntAPPRIS P1 BASIC24.63■■□□□ 1.53
CCDC60Q8IWA6 GET4-201ENST00000265857 2090 ntAPPRIS P2 TSL 1 (best) BASIC24.63■■□□□ 1.53
CCDC60Q8IWA6 TRIM14-202ENST00000342043 1479 ntAPPRIS P1 TSL 1 (best) BASIC24.63■■□□□ 1.53
CCDC60Q8IWA6 PIKFYVE-203ENST00000392202 2039 ntTSL 1 (best) BASIC24.62■■□□□ 1.53
CCDC60Q8IWA6 MTMR14-202ENST00000351233 2105 ntAPPRIS ALT2 TSL 1 (best) BASIC24.62■■□□□ 1.53
CCDC60Q8IWA6 ID4-201ENST00000378700 2344 ntAPPRIS P1 TSL 1 (best) BASIC24.62■■□□□ 1.53
CCDC60Q8IWA6 NME4-201ENST00000219479 995 ntAPPRIS P1 TSL 1 (best) BASIC24.62■■□□□ 1.53
CCDC60Q8IWA6 NDUFB2-201ENST00000247866 504 ntAPPRIS P1 TSL 1 (best) BASIC24.62■■□□□ 1.53
CCDC60Q8IWA6 UBE2J2-203ENST00000360466 1047 ntAPPRIS P1 TSL 2 BASIC24.62■■□□□ 1.53
CCDC60Q8IWA6 NINJ1-201ENST00000375446 1281 ntAPPRIS P1 TSL 1 (best) BASIC24.62■■□□□ 1.53
CCDC60Q8IWA6 NME4-202ENST00000382940 766 ntTSL 3 BASIC24.62■■□□□ 1.53
CCDC60Q8IWA6 JARID2-AS1-201ENST00000441978 455 ntTSL 1 (best) BASIC24.62■■□□□ 1.53
CCDC60Q8IWA6 ATP6V0B-204ENST00000471859 865 ntTSL 5 BASIC24.62■■□□□ 1.53
CCDC60Q8IWA6 AC012414.1-201ENST00000556676 535 ntBASIC24.62■■□□□ 1.53
CCDC60Q8IWA6 NME4-211ENST00000620944 1193 ntTSL 2 BASIC24.62■■□□□ 1.53
CCDC60Q8IWA6 MIR6084-201ENST00000622012 110 ntBASIC24.62■■□□□ 1.53
CCDC60Q8IWA6 PACS2-201ENST00000325438 3708 ntAPPRIS P1 TSL 1 (best) BASIC24.62■■□□□ 1.53
CCDC60Q8IWA6 ZFAND2B-202ENST00000409097 1765 ntTSL 2 BASIC24.62■■□□□ 1.53
CCDC60Q8IWA6 CT47B1-201ENST00000371311 1328 ntAPPRIS P1 TSL 5 BASIC24.61■■□□□ 1.53
CCDC60Q8IWA6 CDIPT-210ENST00000570016 1346 ntAPPRIS P1 TSL 5 BASIC24.61■■□□□ 1.53
CCDC60Q8IWA6 EI24-211ENST00000534546 1544 ntTSL 2 BASIC24.61■■□□□ 1.53
CCDC60Q8IWA6 SPINT2-201ENST00000301244 1802 ntAPPRIS P2 TSL 1 (best) BASIC24.61■■□□□ 1.53
CCDC60Q8IWA6 KLRG2-202ENST00000393039 1148 ntTSL 5 BASIC24.61■■□□□ 1.53
CCDC60Q8IWA6 SLC26A1-203ENST00000398520 1111 ntTSL 1 (best) BASIC24.61■■□□□ 1.53
CCDC60Q8IWA6 FIZ1-205ENST00000592585 489 ntTSL 5 BASIC24.61■■□□□ 1.53
CCDC60Q8IWA6 ZNF517-207ENST00000531720 1615 ntAPPRIS P1 TSL 1 (best) BASIC24.61■■□□□ 1.53
CCDC60Q8IWA6 RBM42-203ENST00000588161 1609 ntAPPRIS ALT1 TSL 1 (best) BASIC24.61■■□□□ 1.53
CCDC60Q8IWA6 NPAS3-203ENST00000357798 2763 ntAPPRIS ALT2 TSL 1 (best) BASIC24.6■■□□□ 1.53
CCDC60Q8IWA6 DYRK3-203ENST00000367109 2163 ntAPPRIS P1 TSL 1 (best) BASIC24.6■■□□□ 1.53
CCDC60Q8IWA6 ZBTB45-205ENST00000600990 2159 ntAPPRIS P1 TSL 5 BASIC24.6■■□□□ 1.53
CCDC60Q8IWA6 MIS18A-201ENST00000290130 1575 ntAPPRIS P1 TSL 1 (best) BASIC24.6■■□□□ 1.53
CCDC60Q8IWA6 SPOCK3-222ENST00000512681 1457 ntTSL 2 BASIC24.6■■□□□ 1.53
CCDC60Q8IWA6 FPGS-202ENST00000373228 1383 ntTSL 5 BASIC24.6■■□□□ 1.53
CCDC60Q8IWA6 NMRAL1-202ENST00000404295 1233 ntAPPRIS P1 TSL 1 (best) BASIC24.6■■□□□ 1.53
CCDC60Q8IWA6 HES6-202ENST00000409002 1286 ntAPPRIS ALT2 TSL 1 (best) BASIC24.6■■□□□ 1.53
CCDC60Q8IWA6 AL583722.4-201ENST00000555524 716 ntTSL 3 BASIC24.6■■□□□ 1.53
CCDC60Q8IWA6 AL358852.1-201ENST00000623174 1268 ntBASIC24.6■■□□□ 1.53
CCDC60Q8IWA6 AL031602.1-201ENST00000633169 911 ntBASIC24.6■■□□□ 1.53
CCDC60Q8IWA6 SLC19A1-212ENST00000567670 2029 ntAPPRIS ALT2 TSL 1 (best) BASIC24.6■■□□□ 1.53
CCDC60Q8IWA6 UBALD1-208ENST00000591401 1305 ntTSL 5 BASIC24.6■■□□□ 1.53
CCDC60Q8IWA6 RNPEP-202ENST00000367286 2282 ntTSL 5 BASIC24.59■■□□□ 1.53
CCDC60Q8IWA6 MVD-201ENST00000301012 1823 ntAPPRIS P1 TSL 1 (best) BASIC24.59■■□□□ 1.53
CCDC60Q8IWA6 GDNF-203ENST00000381826 778 ntTSL 1 (best) BASIC24.59■■□□□ 1.53
CCDC60Q8IWA6 GDNF-204ENST00000427982 856 ntTSL 1 (best) BASIC24.59■■□□□ 1.53
CCDC60Q8IWA6 POLR2H-204ENST00000438240 994 ntTSL 3 BASIC24.59■■□□□ 1.53
CCDC60Q8IWA6 AC008105.3-201ENST00000586376 844 ntTSL 3 BASIC24.59■■□□□ 1.53
CCDC60Q8IWA6 ANKRD20A6P-201ENST00000618763 204 ntBASIC24.59■■□□□ 1.53
CCDC60Q8IWA6 SNX10-207ENST00000446848 2613 ntAPPRIS P2 TSL 1 (best) BASIC24.59■■□□□ 1.53
CCDC60Q8IWA6 PEBP1-201ENST00000261313 1697 ntAPPRIS P1 TSL 1 (best) BASIC24.59■■□□□ 1.53
CCDC60Q8IWA6 CLEC14A-201ENST00000342213 2267 ntAPPRIS P1 BASIC24.59■■□□□ 1.53
CCDC60Q8IWA6 IKZF1-207ENST00000413698 1808 ntTSL 1 (best) BASIC24.58■■□□□ 1.53
CCDC60Q8IWA6 DNAAF3-203ENST00000524407 2059 ntAPPRIS ALT2 TSL 1 (best) BASIC24.58■■□□□ 1.53
CCDC60Q8IWA6 NDUFAF1-201ENST00000260361 1461 ntAPPRIS P1 TSL 1 (best) BASIC24.58■■□□□ 1.53
CCDC60Q8IWA6 WT1-210ENST00000639563 1494 ntAPPRIS ALT2 TSL 1 (best) BASIC24.58■■□□□ 1.53
CCDC60Q8IWA6 TSEN15-201ENST00000361641 1960 ntAPPRIS P1 TSL 1 (best) BASIC24.58■■□□□ 1.53
CCDC60Q8IWA6 DENND2D-202ENST00000369752 1894 ntAPPRIS ALT2 TSL 2 BASIC24.58■■□□□ 1.53
CCDC60Q8IWA6 PLEKHF1-204ENST00000592810 1357 ntAPPRIS P1 TSL 1 (best) BASIC24.58■■□□□ 1.53
CCDC60Q8IWA6 YIF1B-202ENST00000337679 1257 ntTSL 1 (best) BASIC24.58■■□□□ 1.53
CCDC60Q8IWA6 LHPP-203ENST00000392757 840 ntTSL 3 BASIC24.58■■□□□ 1.53
CCDC60Q8IWA6 NEBL-AS1-202ENST00000439097 661 ntTSL 2 BASIC24.58■■□□□ 1.53
CCDC60Q8IWA6 STOML2-202ENST00000452248 1296 ntTSL 2 BASIC24.58■■□□□ 1.53
CCDC60Q8IWA6 STOML2-205ENST00000619795 1293 ntTSL 3 BASIC24.58■■□□□ 1.53
CCDC60Q8IWA6 ARRDC1-AS1-201ENST00000371417 1409 ntTSL 1 (best) BASIC24.58■■□□□ 1.53
CCDC60Q8IWA6 TRAP1-202ENST00000538171 2052 ntTSL 2 BASIC24.58■■□□□ 1.53
CCDC60Q8IWA6 PTH1R-201ENST00000313049 2123 ntAPPRIS P1 TSL 1 (best) BASIC24.58■■□□□ 1.52
CCDC60Q8IWA6 BIN1-210ENST00000393041 2272 ntTSL 1 (best) BASIC24.58■■□□□ 1.52
CCDC60Q8IWA6 PRSS29P-202ENST00000568091 1864 ntTSL 5 BASIC24.58■■□□□ 1.52
CCDC60Q8IWA6 LACTBL1-201ENST00000426928 1641 ntAPPRIS P5 TSL 5 BASIC24.57■■□□□ 1.52
Retrieved 100 of 98,524 protein–RNA pairs in 40.7 ms