Protein–RNA interactions for Protein: Q3L8U1

CHD9, Chromodomain-helicase-DNA-binding protein 9, humanhuman

Predictions only

Length 2,897 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHD9Q3L8U1 HTATIP2-204ENST00000451739 1748 ntAPPRIS P1 TSL 1 (best) BASIC23.8■■□□□ 1.4
CHD9Q3L8U1 XBP1-201ENST00000216037 1850 ntAPPRIS P2 TSL 1 (best) BASIC23.79■■□□□ 1.4
CHD9Q3L8U1 BX005040.4-201ENST00000637145 1518 ntBASIC23.79■■□□□ 1.4
CHD9Q3L8U1 PRORSD1P-201ENST00000295112 541 ntBASIC23.79■■□□□ 1.4
CHD9Q3L8U1 GUK1-201ENST00000312726 1084 ntAPPRIS P3 TSL 1 (best) BASIC23.79■■□□□ 1.4
CHD9Q3L8U1 NDUFV2-201ENST00000318388 930 ntAPPRIS P1 TSL 1 (best) BASIC23.79■■□□□ 1.4
CHD9Q3L8U1 FAM229A-204ENST00000432622 699 ntAPPRIS P2 TSL 2 BASIC23.79■■□□□ 1.4
CHD9Q3L8U1 PRORSD1P-203ENST00000579162 626 ntTSL 5 BASIC23.79■■□□□ 1.4
CHD9Q3L8U1 DGCR6-208ENST00000608842 1837 ntTSL 2 BASIC23.79■■□□□ 1.4
CHD9Q3L8U1 CACNG7-203ENST00000391767 2688 ntAPPRIS P1 TSL 5 BASIC23.79■■□□□ 1.4
CHD9Q3L8U1 TRAPPC5-201ENST00000317378 790 ntAPPRIS P1 TSL 1 (best) BASIC23.79■■□□□ 1.4
CHD9Q3L8U1 RPS15-210ENST00000592623 873 ntTSL 1 (best) BASIC23.79■■□□□ 1.4
CHD9Q3L8U1 LAYN-209ENST00000533265 1703 ntTSL 5 BASIC23.79■■□□□ 1.4
CHD9Q3L8U1 SNX24-201ENST00000261369 2158 ntAPPRIS P1 TSL 1 (best) BASIC23.79■■□□□ 1.4
CHD9Q3L8U1 ILKAP-211ENST00000612675 1335 ntTSL 1 (best) BASIC23.79■■□□□ 1.4
CHD9Q3L8U1 SEC22C-207ENST00000423701 1458 ntTSL 1 (best) BASIC23.79■■□□□ 1.4
CHD9Q3L8U1 CYB5R3-201ENST00000352397 2124 ntAPPRIS P1 TSL 1 (best) BASIC23.79■■□□□ 1.4
CHD9Q3L8U1 BTBD17-201ENST00000375366 1805 ntAPPRIS P1 TSL 1 (best) BASIC23.79■■□□□ 1.4
CHD9Q3L8U1 BCAP31-207ENST00000458587 1810 ntTSL 1 (best) BASIC23.79■■□□□ 1.4
CHD9Q3L8U1 AC092675.2-201ENST00000413274 541 ntTSL 4 BASIC23.78■■□□□ 1.4
CHD9Q3L8U1 AC061979.1-201ENST00000532061 434 ntTSL 5 BASIC23.78■■□□□ 1.4
CHD9Q3L8U1 SLC35A3-218ENST00000639994 1114 ntTSL 5 BASIC23.78■■□□□ 1.4
CHD9Q3L8U1 GAS2L1-201ENST00000406549 1803 ntTSL 1 (best) BASIC23.78■■□□□ 1.4
CHD9Q3L8U1 TRAPPC2L-213ENST00000567895 854 ntTSL 3 BASIC23.78■■□□□ 1.4
CHD9Q3L8U1 CDC16-204ENST00000360383 2211 ntAPPRIS P3 TSL 5 BASIC23.78■■□□□ 1.4
CHD9Q3L8U1 PSIP1-202ENST00000380716 1889 ntTSL 5 BASIC23.78■■□□□ 1.4
CHD9Q3L8U1 MOB2-201ENST00000329957 1207 ntAPPRIS P1 TSL 2 BASIC23.77■■□□□ 1.4
CHD9Q3L8U1 FAM66D-201ENST00000434078 918 ntTSL 5 BASIC23.77■■□□□ 1.4
CHD9Q3L8U1 CKMT1B-207ENST00000441322 1747 ntAPPRIS P1 TSL 1 (best) BASIC23.77■■□□□ 1.4
CHD9Q3L8U1 OAS3-207ENST00000551007 998 ntTSL 2 BASIC23.77■■□□□ 1.4
CHD9Q3L8U1 LHX3-201ENST00000371746 2403 ntAPPRIS P1 TSL 1 (best) BASIC23.77■■□□□ 1.4
CHD9Q3L8U1 FADD-201ENST00000301838 1841 ntAPPRIS P1 TSL 1 (best) BASIC23.77■■□□□ 1.4
CHD9Q3L8U1 UCHL5-201ENST00000367448 1534 ntTSL 1 (best) BASIC23.77■■□□□ 1.4
CHD9Q3L8U1 RBFOX1-206ENST00000535565 1599 ntTSL 2 BASIC23.76■■□□□ 1.39
CHD9Q3L8U1 NAE1-204ENST00000394074 1654 ntTSL 5 BASIC23.76■■□□□ 1.39
CHD9Q3L8U1 ANKRD10-202ENST00000310847 1193 ntTSL 1 (best) BASIC23.76■■□□□ 1.39
CHD9Q3L8U1 KHDRBS1-204ENST00000492989 1215 ntTSL 1 (best) BASIC23.76■■□□□ 1.39
CHD9Q3L8U1 PHPT1-201ENST00000247665 890 ntAPPRIS P1 TSL 1 (best) BASIC23.76■■□□□ 1.39
CHD9Q3L8U1 RAMP1-203ENST00000404910 857 ntTSL 2 BASIC23.76■■□□□ 1.39
CHD9Q3L8U1 KRT18P11-201ENST00000435214 1283 ntBASIC23.76■■□□□ 1.39
CHD9Q3L8U1 AC093762.3-201ENST00000641918 318 ntAPPRIS P1 BASIC23.76■■□□□ 1.39
CHD9Q3L8U1 CERKL-203ENST00000374969 1330 ntTSL 1 (best) BASIC23.76■■□□□ 1.39
CHD9Q3L8U1 SLC35B2-202ENST00000393812 2043 ntAPPRIS P1 TSL 1 (best) BASIC23.76■■□□□ 1.39
CHD9Q3L8U1 AL121749.1-202ENST00000609313 2153 ntBASIC23.76■■□□□ 1.39
CHD9Q3L8U1 TP53I11-215ENST00000531928 1078 ntTSL 3 BASIC23.75■■□□□ 1.39
CHD9Q3L8U1 PAQR4-205ENST00000576565 842 ntTSL 2 BASIC23.75■■□□□ 1.39
CHD9Q3L8U1 ACSS1-202ENST00000376726 2244 ntTSL 2 BASIC23.75■■□□□ 1.39
CHD9Q3L8U1 RPUSD1-207ENST00000565809 1918 ntTSL 2 BASIC23.75■■□□□ 1.39
CHD9Q3L8U1 MAZ-216ENST00000616501 991 ntTSL 5 BASIC23.75■■□□□ 1.39
CHD9Q3L8U1 RAP1B-202ENST00000341355 714 ntAPPRIS P1 TSL 3 BASIC23.74■■□□□ 1.39
CHD9Q3L8U1 TSPY6P-201ENST00000448518 926 ntBASIC23.74■■□□□ 1.39
CHD9Q3L8U1 PKIB-204ENST00000368448 1561 ntAPPRIS P1 TSL 5 BASIC23.74■■□□□ 1.39
CHD9Q3L8U1 ANKRD11-217ENST00000613312 1584 ntAPPRIS ALT2 TSL 5 BASIC23.74■■□□□ 1.39
CHD9Q3L8U1 NOXA1-202ENST00000392815 1464 ntTSL 1 (best) BASIC23.74■■□□□ 1.39
CHD9Q3L8U1 FNDC5-207ENST00000640867 639 ntAPPRIS P2 TSL 2 BASIC23.74■■□□□ 1.39
CHD9Q3L8U1 TSPOAP1-AS1-205ENST00000580022 2337 ntTSL 2 BASIC23.74■■□□□ 1.39
CHD9Q3L8U1 ARF1-213ENST00000540651 1972 ntAPPRIS P1 TSL 2 BASIC23.74■■□□□ 1.39
CHD9Q3L8U1 PFKL-212ENST00000628044 129 ntTSL 3 BASIC23.74■■□□□ 1.39
CHD9Q3L8U1 MRPS7-203ENST00000579002 1638 ntTSL 2 BASIC23.73■■□□□ 1.39
CHD9Q3L8U1 MPND-202ENST00000359935 1475 ntAPPRIS ALT2 TSL 2 BASIC23.73■■□□□ 1.39
CHD9Q3L8U1 KIAA2013-201ENST00000376572 2815 ntAPPRIS P1 TSL 1 (best) BASIC23.73■■□□□ 1.39
CHD9Q3L8U1 TMCO6-201ENST00000252100 1834 ntTSL 1 (best) BASIC23.73■■□□□ 1.39
CHD9Q3L8U1 FAXDC2-211ENST00000520968 558 ntTSL 4 BASIC23.73■■□□□ 1.39
CHD9Q3L8U1 ORMDL1-202ENST00000392349 1137 ntAPPRIS P1 TSL 1 (best) BASIC23.72■■□□□ 1.39
CHD9Q3L8U1 AC098590.1-201ENST00000468126 897 ntBASIC23.72■■□□□ 1.39
CHD9Q3L8U1 ARHGAP24-206ENST00000503995 1273 ntTSL 1 (best) BASIC23.72■■□□□ 1.39
CHD9Q3L8U1 DUX4L16-201ENST00000555130 1264 ntBASIC23.72■■□□□ 1.39
CHD9Q3L8U1 AP004608.1-201ENST00000531319 1402 ntTSL 2 BASIC23.72■■□□□ 1.39
CHD9Q3L8U1 FNTA-201ENST00000302279 1840 ntAPPRIS P1 TSL 1 (best) BASIC23.72■■□□□ 1.39
CHD9Q3L8U1 ZDHHC7-203ENST00000564466 1488 ntTSL 5 BASIC23.72■■□□□ 1.39
CHD9Q3L8U1 LINC02043-201ENST00000419745 1832 ntTSL 2 BASIC23.72■■□□□ 1.39
CHD9Q3L8U1 LARP6-202ENST00000344870 527 ntTSL 1 (best) BASIC23.72■■□□□ 1.39
CHD9Q3L8U1 KANSL1-AS1-201ENST00000398275 517 ntTSL 1 (best) BASIC23.72■■□□□ 1.39
CHD9Q3L8U1 NDUFB10-204ENST00000569148 628 ntTSL 2 BASIC23.72■■□□□ 1.39
CHD9Q3L8U1 UBE2DNL-204ENST00000602536 740 ntBASIC23.72■■□□□ 1.39
CHD9Q3L8U1 MSANTD2-201ENST00000239614 2495 ntTSL 2 BASIC23.71■■□□□ 1.39
CHD9Q3L8U1 RPUSD1-201ENST00000007264 2050 ntAPPRIS P1 TSL 2 BASIC23.71■■□□□ 1.39
CHD9Q3L8U1 MRPL37-201ENST00000336230 1179 ntTSL 1 (best) BASIC23.71■■□□□ 1.39
CHD9Q3L8U1 RPS2P52-201ENST00000469610 820 ntBASIC23.71■■□□□ 1.39
CHD9Q3L8U1 OVCH1-AS1-203ENST00000551108 963 ntTSL 2 BASIC23.71■■□□□ 1.39
CHD9Q3L8U1 SCAND1-202ENST00000373991 1727 ntAPPRIS P1 TSL 1 (best) BASIC23.71■■□□□ 1.39
CHD9Q3L8U1 XXYLT1-202ENST00000356740 564 ntTSL 2 BASIC23.71■■□□□ 1.39
CHD9Q3L8U1 ARL5A-202ENST00000428992 747 ntTSL 2 BASIC23.71■■□□□ 1.39
CHD9Q3L8U1 ADD3-AS1-204ENST00000627565 388 ntTSL 3 BASIC23.71■■□□□ 1.39
CHD9Q3L8U1 WIPI2-202ENST00000382384 1948 ntTSL 1 (best) BASIC23.71■■□□□ 1.39
CHD9Q3L8U1 AJAP1-201ENST00000378190 2383 ntAPPRIS P1 TSL 5 BASIC23.71■■□□□ 1.39
CHD9Q3L8U1 BOP1-205ENST00000569669 2303 ntAPPRIS P1 TSL 1 (best) BASIC23.7■■□□□ 1.39
CHD9Q3L8U1 EXD3-208ENST00000479452 962 ntTSL 1 (best) BASIC23.7■■□□□ 1.39
CHD9Q3L8U1 AC034102.6-201ENST00000550947 559 ntTSL 4 BASIC23.7■■□□□ 1.39
CHD9Q3L8U1 STK19-202ENST00000375333 1557 ntAPPRIS P3 TSL 1 (best) BASIC23.7■■□□□ 1.38
CHD9Q3L8U1 CYHR1-201ENST00000306145 1409 ntTSL 1 (best) BASIC23.7■■□□□ 1.38
CHD9Q3L8U1 AP002748.1-201ENST00000504911 580 ntTSL 3 BASIC23.7■■□□□ 1.38
CHD9Q3L8U1 JADE2-211ENST00000612830 1251 ntTSL 1 (best) BASIC23.7■■□□□ 1.38
CHD9Q3L8U1 MIS18A-201ENST00000290130 1575 ntAPPRIS P1 TSL 1 (best) BASIC23.7■■□□□ 1.38
CHD9Q3L8U1 ZNF511-202ENST00000361518 1520 ntAPPRIS P1 TSL 1 (best) BASIC23.7■■□□□ 1.38
CHD9Q3L8U1 AC144652.1-201ENST00000609974 1624 ntBASIC23.7■■□□□ 1.38
CHD9Q3L8U1 HNRNPD-202ENST00000352301 1667 ntAPPRIS ALT1 TSL 1 (best) BASIC23.69■■□□□ 1.38
CHD9Q3L8U1 FSD1-201ENST00000221856 1831 ntAPPRIS P1 TSL 1 (best) BASIC23.69■■□□□ 1.38
CHD9Q3L8U1 TRIQK-221ENST00000524107 737 ntAPPRIS P1 TSL 3 BASIC23.69■■□□□ 1.38
CHD9Q3L8U1 C19orf67-203ENST00000548523 1427 ntAPPRIS P2 TSL 5 BASIC23.69■■□□□ 1.38
Retrieved 100 of 98,524 protein–RNA pairs in 22.1 ms