Protein–RNA interactions for Protein: Q3KNS1

PTCHD3, Patched domain-containing protein 3, humanhuman

Predictions only

Length 767 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTCHD3Q3KNS1 SH3YL1-201ENST00000356150 1763 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
PTCHD3Q3KNS1 CDC14B-202ENST00000375241 5589 ntAPPRIS P2 TSL 1 (best) BASIC21.53■■□□□ 1.04
PTCHD3Q3KNS1 AC233723.2-201ENST00000623798 2106 ntBASIC21.53■■□□□ 1.04
PTCHD3Q3KNS1 KCNIP1-201ENST00000328939 2014 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
PTCHD3Q3KNS1 ZNF32-202ENST00000395797 1201 ntAPPRIS P1 TSL 2 BASIC21.53■■□□□ 1.04
PTCHD3Q3KNS1 RALB-203ENST00000420510 1252 ntAPPRIS P1 TSL 2 BASIC21.53■■□□□ 1.04
PTCHD3Q3KNS1 CDKN2A-206ENST00000494262 989 ntTSL 3 BASIC21.53■■□□□ 1.04
PTCHD3Q3KNS1 AC092902.2-206ENST00000625484 846 ntTSL 5 BASIC21.53■■□□□ 1.04
PTCHD3Q3KNS1 LACTBL1-201ENST00000426928 1641 ntAPPRIS P5 TSL 5 BASIC21.53■■□□□ 1.04
PTCHD3Q3KNS1 AC007326.4-201ENST00000638240 1669 ntAPPRIS P1 TSL 5 BASIC21.53■■□□□ 1.04
PTCHD3Q3KNS1 PICK1-202ENST00000404072 2164 ntAPPRIS P1 TSL 2 BASIC21.53■■□□□ 1.04
PTCHD3Q3KNS1 YY1AP1-212ENST00000404643 2654 ntAPPRIS ALT2 TSL 1 (best) BASIC21.52■■□□□ 1.04
PTCHD3Q3KNS1 DOK1-203ENST00000409429 1955 ntTSL 1 (best) BASIC21.52■■□□□ 1.04
PTCHD3Q3KNS1 ZDHHC16-203ENST00000353979 1647 ntTSL 1 (best) BASIC21.52■■□□□ 1.04
PTCHD3Q3KNS1 OAS3-205ENST00000548514 1392 ntTSL 2 BASIC21.52■■□□□ 1.04
PTCHD3Q3KNS1 ACAD8-202ENST00000374752 1797 ntTSL 2 BASIC21.52■■□□□ 1.04
PTCHD3Q3KNS1 CLPSL2-202ENST00000403376 405 ntAPPRIS P3 TSL 1 (best) BASIC21.52■■□□□ 1.04
PTCHD3Q3KNS1 AL359317.1-201ENST00000556316 578 ntTSL 4 BASIC21.52■■□□□ 1.04
PTCHD3Q3KNS1 ARHGDIA-217ENST00000584461 886 ntTSL 2 BASIC21.52■■□□□ 1.04
PTCHD3Q3KNS1 AC009086.3-201ENST00000623486 1008 ntBASIC21.52■■□□□ 1.04
PTCHD3Q3KNS1 MAP2K5-204ENST00000395476 1689 ntTSL 1 (best) BASIC21.52■■□□□ 1.04
PTCHD3Q3KNS1 TGIF1-206ENST00000405385 1689 ntTSL 2 BASIC21.52■■□□□ 1.04
PTCHD3Q3KNS1 MAGI2-217ENST00000629359 6704 ntTSL 5 BASIC21.52■■□□□ 1.04
PTCHD3Q3KNS1 CDR2-201ENST00000268383 2702 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
PTCHD3Q3KNS1 TMEM8B-203ENST00000377996 2473 ntTSL 2 BASIC21.52■■□□□ 1.04
PTCHD3Q3KNS1 PRELID2-201ENST00000334744 2140 ntTSL 2 BASIC21.52■■□□□ 1.03
PTCHD3Q3KNS1 HOXD4-201ENST00000306324 1464 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.03
PTCHD3Q3KNS1 ARMC6-201ENST00000269932 2412 ntAPPRIS P1 TSL 5 BASIC21.51■■□□□ 1.03
PTCHD3Q3KNS1 CMPK2-202ENST00000404168 2042 ntAPPRIS ALT2 TSL 1 (best) BASIC21.51■■□□□ 1.03
PTCHD3Q3KNS1 STRBP-202ENST00000360998 2990 ntTSL 1 (best) BASIC21.51■■□□□ 1.03
PTCHD3Q3KNS1 ARX-201ENST00000379044 2876 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
PTCHD3Q3KNS1 WDR86-208ENST00000628331 1905 ntTSL 5 BASIC21.51■■□□□ 1.03
PTCHD3Q3KNS1 FAM107B-211ENST00000468747 2633 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
PTCHD3Q3KNS1 POLR2J2-202ENST00000358438 2065 ntAPPRIS ALT2 TSL 1 (best) BASIC21.51■■□□□ 1.03
PTCHD3Q3KNS1 NAA38-201ENST00000333775 999 ntTSL 1 (best) BASIC21.51■■□□□ 1.03
PTCHD3Q3KNS1 PPT2-248ENST00000395523 2111 ntAPPRIS ALT2 TSL 5 BASIC21.51■■□□□ 1.03
PTCHD3Q3KNS1 AP006621.1-201ENST00000532946 536 ntTSL 5 BASIC21.51■■□□□ 1.03
PTCHD3Q3KNS1 AC099791.2-201ENST00000605725 427 ntBASIC21.51■■□□□ 1.03
PTCHD3Q3KNS1 TM9SF3-201ENST00000371142 6141 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
PTCHD3Q3KNS1 PCP4L1-201ENST00000504449 1424 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
PTCHD3Q3KNS1 DACT1-201ENST00000335867 2571 ntAPPRIS P3 TSL 1 (best) BASIC21.51■■□□□ 1.03
PTCHD3Q3KNS1 SLC30A5-201ENST00000380860 1317 ntTSL 1 (best) BASIC21.51■■□□□ 1.03
PTCHD3Q3KNS1 IDH2-202ENST00000540499 1453 ntTSL 2 BASIC21.51■■□□□ 1.03
PTCHD3Q3KNS1 RBM42-203ENST00000588161 1609 ntAPPRIS ALT1 TSL 1 (best) BASIC21.51■■□□□ 1.03
PTCHD3Q3KNS1 CACNB1-203ENST00000394310 1753 ntAPPRIS ALT1 TSL 1 (best) BASIC21.51■■□□□ 1.03
PTCHD3Q3KNS1 SLC35F4-206ENST00000556826 1908 ntAPPRIS P1 TSL 5 BASIC21.51■■□□□ 1.03
PTCHD3Q3KNS1 UBE2S-201ENST00000264552 2548 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
PTCHD3Q3KNS1 NEK6-214ENST00000545174 2573 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
PTCHD3Q3KNS1 MAPKAPK5-AS1-201ENST00000428207 2290 ntTSL 1 (best) BASIC21.5■■□□□ 1.03
PTCHD3Q3KNS1 CTU2-201ENST00000312060 1672 ntAPPRIS P3 TSL 5 BASIC21.5■■□□□ 1.03
PTCHD3Q3KNS1 SLC19A1-212ENST00000567670 2029 ntAPPRIS ALT2 TSL 1 (best) BASIC21.5■■□□□ 1.03
PTCHD3Q3KNS1 LYPD2-201ENST00000359228 594 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
PTCHD3Q3KNS1 TGFBR3L-202ENST00000565886 1260 ntAPPRIS P1 TSL 5 BASIC21.5■■□□□ 1.03
PTCHD3Q3KNS1 AC142381.2-201ENST00000566120 298 ntBASIC21.5■■□□□ 1.03
PTCHD3Q3KNS1 AC241377.3-202ENST00000626088 1088 ntBASIC21.5■■□□□ 1.03
PTCHD3Q3KNS1 AC241585.3-202ENST00000628937 1088 ntBASIC21.5■■□□□ 1.03
PTCHD3Q3KNS1 AC245100.8-202ENST00000629247 1058 ntBASIC21.5■■□□□ 1.03
PTCHD3Q3KNS1 TPST2-203ENST00000403880 2084 ntAPPRIS P1 TSL 5 BASIC21.5■■□□□ 1.03
PTCHD3Q3KNS1 AP006623.1-201ENST00000506172 2061 ntTSL 5 BASIC21.5■■□□□ 1.03
PTCHD3Q3KNS1 C7orf25-203ENST00000431882 1645 ntTSL 2 BASIC21.5■■□□□ 1.03
PTCHD3Q3KNS1 SRPK3-202ENST00000370101 1958 ntAPPRIS P3 TSL 1 (best) BASIC21.5■■□□□ 1.03
PTCHD3Q3KNS1 TERT-206ENST00000508104 2486 ntTSL 5 BASIC21.5■■□□□ 1.03
PTCHD3Q3KNS1 SLC25A11-201ENST00000225665 1897 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
PTCHD3Q3KNS1 HSD11B1L-217ENST00000581521 1884 ntAPPRIS P3 TSL 5 BASIC21.49■■□□□ 1.03
PTCHD3Q3KNS1 COG8-201ENST00000562081 1731 ntAPPRIS P1 TSL 5 BASIC21.49■■□□□ 1.03
PTCHD3Q3KNS1 DLL3-202ENST00000356433 2055 ntAPPRIS P1 TSL 2 BASIC21.49■■□□□ 1.03
PTCHD3Q3KNS1 CEBPB-AS1-201ENST00000613921 2648 ntTSL 3 BASIC21.49■■□□□ 1.03
PTCHD3Q3KNS1 DSG2-201ENST00000261590 5831 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
PTCHD3Q3KNS1 CBWD5-207ENST00000382405 1791 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
PTCHD3Q3KNS1 MAPK12-211ENST00000622558 1779 ntTSL 1 (best) BASIC21.49■■□□□ 1.03
PTCHD3Q3KNS1 SUMF1-201ENST00000272902 2159 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
PTCHD3Q3KNS1 AL355987.3-201ENST00000456614 735 ntAPPRIS P1 TSL 4 BASIC21.49■■□□□ 1.03
PTCHD3Q3KNS1 SLC35A3-216ENST00000639221 1032 ntTSL 5 BASIC21.49■■□□□ 1.03
PTCHD3Q3KNS1 TTC9-201ENST00000256367 5217 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
PTCHD3Q3KNS1 GRAMD1A-201ENST00000317991 2695 ntAPPRIS P3 TSL 1 (best) BASIC21.49■■□□□ 1.03
PTCHD3Q3KNS1 DDN-AS1-202ENST00000547866 2114 ntTSL 3 BASIC21.49■■□□□ 1.03
PTCHD3Q3KNS1 ASB6-201ENST00000277458 2330 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
PTCHD3Q3KNS1 ECHDC1-203ENST00000368291 1354 ntTSL 2 BASIC21.48■■□□□ 1.03
PTCHD3Q3KNS1 SYT6-210ENST00000641643 1587 ntBASIC21.48■■□□□ 1.03
PTCHD3Q3KNS1 CADM1-201ENST00000331581 1766 ntTSL 1 (best) BASIC21.48■■□□□ 1.03
PTCHD3Q3KNS1 CNN3-201ENST00000370206 2165 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
PTCHD3Q3KNS1 PIKFYVE-203ENST00000392202 2039 ntTSL 1 (best) BASIC21.48■■□□□ 1.03
PTCHD3Q3KNS1 BEST2-204ENST00000553030 2000 ntAPPRIS P1 TSL 5 BASIC21.48■■□□□ 1.03
PTCHD3Q3KNS1 ASPSCR1-202ENST00000306739 1843 ntAPPRIS P3 TSL 1 (best) BASIC21.48■■□□□ 1.03
PTCHD3Q3KNS1 MRPL41-201ENST00000371443 1262 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
PTCHD3Q3KNS1 YJEFN3-201ENST00000436027 878 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
PTCHD3Q3KNS1 MLF2-206ENST00000539187 1110 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
PTCHD3Q3KNS1 DUX4L19-201ENST00000557448 1267 ntBASIC21.48■■□□□ 1.03
PTCHD3Q3KNS1 OIP5-AS1-208ENST00000560706 473 ntTSL 5 BASIC21.48■■□□□ 1.03
PTCHD3Q3KNS1 BCL11B-203ENST00000443726 2599 ntAPPRIS ALT2 TSL 5 BASIC21.48■■□□□ 1.03
PTCHD3Q3KNS1 LAYN-209ENST00000533265 1703 ntTSL 5 BASIC21.48■■□□□ 1.03
PTCHD3Q3KNS1 NIPSNAP1-201ENST00000216121 2237 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
PTCHD3Q3KNS1 PRSS22-201ENST00000161006 1386 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
PTCHD3Q3KNS1 ACSF2-207ENST00000504392 1881 ntTSL 2 BASIC21.47■■□□□ 1.03
PTCHD3Q3KNS1 CACNG2-201ENST00000300105 2384 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
PTCHD3Q3KNS1 FXYD3-201ENST00000344013 1404 ntTSL 5 BASIC21.47■■□□□ 1.03
PTCHD3Q3KNS1 SIRT7-201ENST00000328666 1743 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
PTCHD3Q3KNS1 NAPRT-204ENST00000449291 1965 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
PTCHD3Q3KNS1 HACD1-202ENST00000361271 2237 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
PTCHD3Q3KNS1 TCF3-203ENST00000395423 2779 ntTSL 5 BASIC21.47■■□□□ 1.03
Retrieved 100 of 98,524 protein–RNA pairs in 36 ms